Wall clock time and date at job start Tue Mar 31 2020 16:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46532 * 2 1 4 4 O 1.42894 * 109.47076 * 239.99921 * 2 1 3 5 5 C 1.42907 * 113.99875 * 89.99976 * 4 2 1 6 6 C 1.50699 * 109.47046 * 179.97438 * 5 4 2 7 7 C 1.38231 * 119.99666 * 269.72401 * 6 5 4 8 8 C 1.38240 * 119.99916 * 179.79218 * 7 6 5 9 9 C 1.38233 * 119.99676 * 0.45964 * 8 7 6 10 10 C 1.38237 * 120.00172 * 359.77343 * 9 8 7 11 11 C 1.38234 * 120.00046 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.47210 * 119.99972 * 2 1 3 13 13 O 1.21278 * 120.00024 * 120.00222 * 12 2 1 14 14 N 1.34779 * 119.99951 * 300.00597 * 12 2 1 15 15 C 1.46499 * 119.99807 * 180.27697 * 14 12 2 16 16 C 1.53005 * 109.47046 * 179.71983 * 15 14 12 17 17 H 1.08992 * 110.63715 * 54.29838 * 16 15 14 18 18 C 1.55157 * 110.71949 * 177.43975 * 16 15 14 19 19 C 1.55120 * 101.48385 * 153.73526 * 18 16 15 20 20 N 1.47424 * 104.94320 * 323.21932 * 19 18 16 21 21 C 1.36934 * 125.64715 * 203.97100 * 20 19 18 22 22 H 1.08000 * 119.99979 * 169.99095 * 21 20 19 23 23 C 1.38814 * 120.00302 * 349.98209 * 21 20 19 24 24 N 1.31619 * 120.00029 * 350.42662 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 170.42182 * 23 21 20 26 26 H 1.48497 * 109.46945 * 94.14325 * 25 23 21 27 27 H 1.48503 * 109.47030 * 214.14395 * 25 23 21 28 28 H 1.48497 * 109.47144 * 334.14178 * 25 23 21 29 29 C 1.47017 * 108.70192 * 24.00611 * 20 19 18 30 30 H 1.08998 * 109.47660 * 60.00103 * 1 2 3 31 31 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47279 * 299.99475 * 1 2 3 33 33 H 1.08996 * 109.46913 * 300.00152 * 5 4 2 34 34 H 1.09003 * 109.46773 * 59.99854 * 5 4 2 35 35 H 1.07997 * 120.00570 * 359.97438 * 7 6 5 36 36 H 1.07999 * 120.00455 * 180.25604 * 8 7 6 37 37 H 1.08003 * 120.00002 * 179.79176 * 9 8 7 38 38 H 1.07998 * 120.00081 * 179.97438 * 10 9 8 39 39 H 1.07999 * 120.00382 * 179.97438 * 11 10 9 40 40 H 0.96995 * 119.99864 * 359.97438 * 14 12 2 41 41 H 1.09002 * 109.47074 * 299.72247 * 15 14 12 42 42 H 1.09005 * 109.47375 * 59.72005 * 15 14 12 43 43 H 1.09006 * 111.00345 * 271.94005 * 18 16 15 44 44 H 1.09001 * 111.00573 * 35.79141 * 18 16 15 45 45 H 1.09003 * 110.41405 * 204.29115 * 19 18 16 46 46 H 1.09001 * 110.29975 * 82.09074 * 19 18 16 47 47 H 0.96998 * 120.00265 * 179.97438 * 24 23 21 48 48 H 1.09003 * 109.88427 * 239.52255 * 29 20 19 49 49 H 1.08996 * 110.01378 * 118.43135 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2000 0.1830 -2.2941 6 6 2.7014 -0.6282 -3.4610 7 6 4.0600 -0.7954 -3.6535 8 6 4.5198 -1.5431 -4.7215 9 6 3.6213 -2.1154 -5.6023 10 6 2.2627 -1.9441 -5.4125 11 6 1.8028 -1.2000 -4.3422 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.2000 -0.9371 3.6507 16 6 1.6946 -0.2126 4.9000 17 1 0.6095 -0.1135 4.8740 18 6 2.1475 -0.9540 6.1855 19 6 2.1684 0.2032 7.2183 20 7 2.6516 1.3754 6.4661 21 6 3.2642 2.4740 7.0074 22 1 3.7265 3.2069 6.3628 23 6 3.2908 2.6457 8.3846 24 7 2.5718 1.8617 9.1596 25 14 4.3474 3.9894 9.1380 26 1 3.5262 5.2102 9.3395 27 1 4.8769 3.5276 10.4463 28 1 5.4788 4.2986 8.2273 29 6 2.3660 1.1700 5.0386 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.2538 0.6547 -2.5588 34 1 2.9319 0.9514 -2.0449 35 1 4.7621 -0.3445 -2.9680 36 1 5.5812 -1.6772 -4.8696 37 1 3.9806 -2.6968 -6.4386 38 1 1.5607 -2.3910 -6.1009 39 1 0.7415 -1.0658 -4.1941 40 1 1.1493 0.5388 2.5436 41 1 1.8373 -1.9649 3.6550 42 1 3.2901 -0.9366 3.6465 43 1 1.4267 -1.7211 6.4686 44 1 3.1421 -1.3819 6.0599 45 1 2.8498 -0.0297 8.0366 46 1 1.1646 0.3860 7.6018 47 1 2.5907 1.9814 10.1220 48 1 3.2946 1.1900 4.4681 49 1 1.6925 1.9471 4.6773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663603977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:05 Heat of formation + Delta-G solvation = -57.511464 kcal Electronic energy + Delta-G solvation = -27480.352768 eV Core-core repulsion = 23599.975633 eV Total energy + Delta-G solvation = -3880.377134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.12652 -40.21190 -39.35597 -38.38411 -36.05243 -34.43158 -33.46479 -32.08156 -31.79899 -31.27580 -29.75106 -27.39609 -27.13032 -25.72742 -24.31001 -23.48646 -22.27058 -22.23772 -21.40077 -20.99014 -18.90272 -18.41792 -18.18293 -17.52684 -16.99496 -16.89593 -16.68315 -16.43821 -16.12311 -15.84840 -15.62495 -15.16112 -15.08668 -14.40324 -14.28770 -14.27188 -14.19919 -13.82741 -13.54980 -13.53470 -13.35826 -13.28596 -13.14844 -12.98220 -12.72734 -12.68077 -12.41436 -12.02559 -11.93362 -11.90223 -11.84241 -11.81616 -11.60401 -11.46045 -11.02555 -10.67869 -10.49064 -10.10971 -9.83023 -9.76965 -8.84554 -7.88445 -5.22296 0.31482 0.49213 1.45550 1.47246 1.56610 1.57388 1.88869 2.49356 2.71201 3.18324 3.30612 3.59952 3.67667 3.81252 3.88247 3.88729 3.97539 3.99552 4.05712 4.10896 4.14778 4.28115 4.35004 4.39131 4.45654 4.63351 4.65440 4.68802 4.73448 4.75612 4.79568 4.85106 4.91946 5.05686 5.06891 5.12937 5.14452 5.22741 5.34744 5.43534 5.47916 5.53766 5.60098 5.62295 5.65512 5.75721 6.04601 6.10446 6.21544 6.55547 7.09025 7.22035 7.77713 8.43723 9.23612 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.001835 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.008596 B =15255.763618 C =15730.976967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.115 0.885 4 O -0.381 6.381 5 C 0.097 3.903 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.135 4.135 9 C -0.122 4.122 10 C -0.132 4.132 11 C -0.109 4.109 12 C 0.508 3.492 13 O -0.576 6.576 14 N -0.711 5.711 15 C 0.145 3.855 16 C -0.092 4.092 17 H 0.099 0.901 18 C -0.124 4.124 19 C 0.176 3.824 20 N -0.627 5.627 21 C -0.244 4.244 22 H 0.078 0.922 23 C -0.065 4.065 24 N -0.947 5.947 25 Si 0.976 3.024 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.271 1.271 29 C 0.137 3.863 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.415 0.585 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.002 0.998 47 H 0.248 0.752 48 H 0.022 0.978 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 -4.650 -28.975 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.132 0.868 4 O -0.300 6.300 5 C 0.022 3.978 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.153 4.153 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.127 4.127 12 C 0.295 3.705 13 O -0.455 6.455 14 N -0.364 5.364 15 C 0.021 3.979 16 C -0.111 4.111 17 H 0.117 0.883 18 C -0.163 4.163 19 C 0.051 3.949 20 N -0.353 5.353 21 C -0.373 4.373 22 H 0.096 0.904 23 C -0.258 4.258 24 N -0.596 5.596 25 Si 0.804 3.196 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.195 1.195 29 C 0.012 3.988 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.253 0.747 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.040 0.960 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.739 -5.455 -28.883 29.773 hybrid contribution 0.468 1.248 1.125 1.744 sum -4.271 -4.208 -27.757 28.397 Atomic orbital electron populations 1.22244 0.91269 1.03556 1.05164 1.22038 0.96619 0.96723 0.83587 0.86787 1.88095 1.86959 1.35450 1.19533 1.21595 1.01152 0.91413 0.83673 1.19800 0.94004 1.00821 0.96300 1.21308 0.95328 0.98909 0.98030 1.21446 1.00986 0.97799 0.95038 1.21552 0.93540 0.99159 0.99694 1.21497 0.96375 0.98854 0.98209 1.21334 1.00170 0.96654 0.94556 1.21031 0.79650 0.84420 0.85403 1.90700 1.39324 1.28196 1.87291 1.45869 1.53402 1.32541 1.04629 1.21196 0.98370 0.96035 0.82347 1.22265 1.00929 0.94380 0.93510 0.88260 1.22892 1.01491 0.97413 0.94523 1.21244 0.95880 0.84910 0.92870 1.44788 1.69555 1.18265 1.02735 1.19385 1.27260 0.99909 0.90723 0.90418 1.25648 1.01500 1.01832 0.96845 1.70148 1.43644 1.42448 1.03344 0.85113 0.78566 0.78418 0.77509 1.21150 1.22040 1.19546 1.21507 0.96624 0.95249 0.85377 0.89124 0.92474 0.88922 0.89763 0.91514 0.86002 0.84428 0.83813 0.83711 0.84497 0.74748 0.90834 0.93014 0.89005 0.91775 0.95133 0.98010 0.94291 0.96021 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.42 71.98 0.68 -1.39 16 2 C 0.07 1.32 3.14 29.85 0.09 1.42 16 3 H 0.11 1.50 7.79 -2.39 -0.02 1.48 16 4 O -0.38 -8.96 9.50 -129.94 -1.23 -10.19 16 5 C 0.10 1.62 5.87 71.24 0.42 2.04 16 6 C -0.11 -2.06 5.51 -19.87 -0.11 -2.17 16 7 C -0.12 -2.26 9.70 22.27 0.22 -2.04 16 8 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 9 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 10 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 11 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 12 C 0.51 13.47 7.23 87.66 0.63 14.10 16 13 O -0.58 -21.37 16.50 16.01 0.26 -21.10 16 14 N -0.71 -16.17 5.32 -463.04 -2.46 -18.64 16 15 C 0.14 3.92 5.00 86.38 0.43 4.36 16 16 C -0.09 -2.75 2.98 -9.60 -0.03 -2.78 16 17 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 18 C -0.12 -4.32 6.55 32.06 0.21 -4.11 16 19 C 0.18 8.48 5.43 86.93 0.47 8.95 16 20 N -0.63 -31.72 3.40 -691.58 -2.35 -34.07 16 21 C -0.24 -13.62 10.24 84.03 0.86 -12.76 16 22 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 23 C -0.06 -3.68 5.40 84.86 0.46 -3.23 16 24 N -0.95 -56.77 10.68 21.65 0.23 -56.54 16 25 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 29 C 0.14 5.26 6.64 86.73 0.58 5.84 16 30 H 0.09 0.77 7.87 -2.39 -0.02 0.75 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.09 0.83 7.56 -2.39 -0.02 0.81 16 33 H 0.08 0.94 7.81 -2.39 -0.02 0.92 16 34 H 0.07 0.97 8.03 -2.39 -0.02 0.96 16 35 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.42 7.05 7.82 -92.71 -0.73 6.33 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 42 H 0.05 1.63 8.00 -2.38 -0.02 1.61 16 43 H 0.09 2.68 8.14 -2.38 -0.02 2.67 16 44 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 45 H 0.03 1.68 6.94 -2.39 -0.02 1.66 16 46 H 0.00 0.10 8.07 -2.39 -0.02 0.08 16 47 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 48 H 0.02 0.85 7.73 -2.39 -0.02 0.83 16 49 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.94 402.07 2.48 -75.46 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.20 Total: 15.88 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.80 Total: 1.56 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.58 Total: -109.25 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.97 Total: -31.29 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.94 2.48 -75.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.951 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds