Wall clock time and date at job start Tue Mar 31 2020 16:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 O 1.42899 * 109.46944 * 240.00448 * 2 1 3 5 5 C 1.42902 * 113.99984 * 90.00037 * 4 2 1 6 6 C 1.50701 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99950 * 269.72805 * 6 5 4 8 8 C 1.38234 * 119.99951 * 179.74187 * 7 6 5 9 9 C 1.38240 * 119.99967 * 0.55261 * 8 7 6 10 10 C 1.38230 * 119.99894 * 359.70250 * 9 8 7 11 11 C 1.38237 * 120.00211 * 90.00016 * 6 5 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 C 1.52999 * 109.46992 * 179.97438 * 15 14 12 17 17 H 1.09009 * 110.64339 * 305.70001 * 16 15 14 18 18 C 1.55155 * 110.72329 * 182.56119 * 16 15 14 19 19 C 1.54912 * 101.58318 * 206.13572 * 18 16 15 20 20 N 1.47425 * 104.83173 * 37.00531 * 19 18 16 21 21 C 1.36936 * 125.64482 * 155.83404 * 20 19 18 22 22 H 1.08002 * 119.99450 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00526 * 0.03071 * 21 20 19 24 24 N 1.31621 * 119.99894 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00312 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47070 * 89.99941 * 25 23 21 27 27 H 1.48496 * 109.46832 * 209.99878 * 25 23 21 28 28 H 1.48500 * 109.47040 * 329.99859 * 25 23 21 29 29 C 1.47313 * 108.73646 * 335.71945 * 20 19 18 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47399 * 299.99664 * 5 4 2 34 34 H 1.08992 * 109.47058 * 60.00431 * 5 4 2 35 35 H 1.08000 * 119.99870 * 0.02562 * 7 6 5 36 36 H 1.08000 * 120.00394 * 180.27087 * 8 7 6 37 37 H 1.07998 * 120.00087 * 179.71738 * 9 8 7 38 38 H 1.08001 * 120.00435 * 180.02562 * 10 9 8 39 39 H 1.07999 * 119.99916 * 0.02562 * 11 6 5 40 40 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 41 41 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 42 42 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 43 43 H 1.09004 * 111.00081 * 324.20546 * 18 16 15 44 44 H 1.08996 * 111.01074 * 88.01826 * 18 16 15 45 45 H 1.08999 * 110.36835 * 155.84710 * 19 18 16 46 46 H 1.08992 * 110.36428 * 278.16751 * 19 18 16 47 47 H 0.96996 * 120.00427 * 180.02562 * 24 23 21 48 48 H 1.09003 * 110.06154 * 241.87331 * 29 20 19 49 49 H 1.09000 * 109.85548 * 120.60968 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2000 0.1831 -2.2941 6 6 2.7001 -0.6282 -3.4615 7 6 4.0586 -0.7965 -3.6548 8 6 4.5172 -1.5451 -4.7225 9 6 3.6177 -2.1159 -5.6035 10 6 2.2595 -1.9432 -5.4132 11 6 1.8007 -1.1993 -4.3422 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 6 2.1855 -0.9476 3.6505 16 6 1.6714 -0.2294 4.8998 17 1 1.9400 0.8268 4.8738 18 6 2.2195 -0.9035 6.1853 19 6 1.1263 -0.5360 7.2196 20 7 -0.1411 -0.6048 6.4697 21 6 -1.3793 -0.8199 7.0133 22 1 -2.2505 -0.8535 6.3758 23 6 -1.5149 -0.9948 8.3837 24 7 -0.4532 -0.9543 9.1605 25 14 -3.2042 -1.2876 9.1253 26 1 -3.4825 -2.7458 9.1624 27 1 -3.2401 -0.7416 10.5058 28 1 -4.2328 -0.6082 8.2974 29 6 0.1441 -0.4010 5.0388 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2537 0.6549 -2.5589 34 1 2.9319 0.9514 -2.0450 35 1 4.7614 -0.3470 -2.9690 36 1 5.5783 -1.6803 -4.8711 37 1 3.9761 -2.6970 -6.4403 38 1 1.5567 -2.3894 -6.1012 39 1 0.7395 -1.0638 -4.1939 40 1 1.1445 0.5353 2.5435 41 1 1.8217 -1.9751 3.6463 42 1 3.2755 -0.9481 3.6549 43 1 2.2910 -1.9839 6.0597 44 1 3.1835 -0.4805 6.4678 45 1 1.1220 -1.2551 8.0387 46 1 1.2878 0.4726 7.5999 47 1 -0.5478 -1.0769 10.1180 48 1 -0.3637 0.4943 4.6802 49 1 -0.1847 -1.2698 4.4685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663603978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:17 Heat of formation + Delta-G solvation = -34.191419 kcal Electronic energy + Delta-G solvation = -27499.578035 eV Core-core repulsion = 23620.212134 eV Total energy + Delta-G solvation = -3879.365901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.13348 -39.50022 -37.99761 -37.30778 -34.65772 -33.00846 -32.41065 -31.20702 -31.09089 -29.66380 -28.18793 -26.52133 -25.68942 -24.40325 -23.08776 -22.88234 -21.65759 -20.68299 -19.93750 -19.61302 -17.68657 -17.31172 -16.93128 -16.72332 -16.13875 -15.68246 -15.57846 -15.13780 -15.01657 -14.65929 -14.38733 -14.05127 -13.70805 -13.66829 -13.46848 -13.20213 -12.99563 -12.72916 -12.53310 -12.51113 -12.32988 -11.79275 -11.74114 -11.64804 -11.49263 -11.34225 -11.21699 -10.96487 -10.80878 -10.43678 -10.19043 -10.12426 -10.02230 -9.84985 -9.62009 -9.44133 -9.21470 -9.13789 -8.96571 -8.66145 -6.84686 -5.66444 -3.08166 0.93943 1.10798 2.60714 2.82005 3.39189 3.43116 3.44039 3.45945 3.88698 4.42780 4.46943 4.47818 4.60314 4.67822 4.69764 4.77219 4.83482 4.93337 4.97773 5.10670 5.21009 5.24759 5.32918 5.34076 5.39216 5.43856 5.51848 5.64768 5.68865 5.72828 5.86155 5.88071 6.06451 6.10762 6.13171 6.19730 6.27748 6.33605 6.42843 6.53247 6.57866 6.66597 6.69762 6.80112 6.89444 7.50142 7.53515 7.61242 7.84652 8.25156 8.35409 9.20999 9.81813 10.46674 11.37485 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.001809 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.504966 B =15476.930709 C =16077.965318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.087 0.913 4 O -0.349 6.349 5 C 0.100 3.900 6 C -0.089 4.089 7 C -0.096 4.096 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.097 4.097 12 C 0.511 3.489 13 O -0.523 6.523 14 N -0.723 5.723 15 C 0.134 3.866 16 C -0.114 4.114 17 H 0.076 0.924 18 C -0.135 4.135 19 C 0.152 3.848 20 N -0.605 5.605 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.141 3.859 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.401 0.599 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.012 0.988 47 H 0.252 0.748 48 H 0.018 0.982 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.588 4.730 -26.792 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.104 0.896 4 O -0.267 6.267 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.296 3.704 13 O -0.397 6.397 14 N -0.376 5.376 15 C 0.010 3.990 16 C -0.134 4.134 17 H 0.094 0.906 18 C -0.175 4.175 19 C 0.027 3.973 20 N -0.331 5.331 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.571 5.571 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.208 1.208 29 C 0.015 3.985 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.235 0.765 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.030 0.970 47 H 0.063 0.937 48 H 0.036 0.964 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.031 3.772 -26.667 28.104 hybrid contribution -1.217 0.589 0.445 1.423 sum 6.814 4.361 -26.221 27.441 Atomic orbital electron populations 1.22259 0.93372 1.04134 1.03213 1.21922 0.95208 0.96272 0.85715 0.89566 1.88147 1.86512 1.33658 1.18424 1.21426 0.99704 0.91722 0.84807 1.19555 0.93710 1.00058 0.95582 1.21100 0.94936 0.98047 0.97286 1.21163 0.99846 0.97997 0.95183 1.21211 0.93465 0.99345 0.99292 1.21152 0.95795 0.99225 0.98117 1.21074 0.99505 0.96580 0.94401 1.20306 0.80783 0.85086 0.84270 1.90727 1.36989 1.25507 1.86520 1.46016 1.53829 1.32311 1.05445 1.21469 0.98725 0.96457 0.82306 1.22448 0.97475 0.99495 0.93944 0.90600 1.23009 0.99320 0.99814 0.95318 1.21933 0.81649 0.99963 0.93742 1.44573 1.03937 1.84293 1.00278 1.19074 0.83914 1.41307 0.90814 0.90548 1.24792 0.97598 1.02356 0.95996 1.69793 1.26595 1.56863 1.03826 0.86071 0.83072 0.77882 0.78458 1.21583 1.21648 1.20775 1.21386 0.91558 0.97395 0.88170 0.90574 0.91312 0.90880 0.92164 0.92246 0.85867 0.85870 0.86024 0.85897 0.85892 0.76512 0.91159 0.91627 0.91812 0.92111 0.87505 0.97023 0.93724 0.96396 0.95702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.42 37.16 0.35 -1.12 16 2 C 0.07 0.73 3.14 -27.88 -0.09 0.64 16 3 H 0.09 0.65 7.79 -51.93 -0.40 0.24 16 4 O -0.35 -4.31 9.50 -55.14 -0.52 -4.83 16 5 C 0.10 0.88 5.87 36.01 0.21 1.09 16 6 C -0.09 -0.86 5.51 -104.62 -0.58 -1.43 16 7 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 8 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 9 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 10 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 11 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 12 C 0.51 7.15 7.23 -10.98 -0.08 7.07 16 13 O -0.52 -9.75 16.50 -14.36 -0.24 -9.99 16 14 N -0.72 -9.08 5.32 -60.30 -0.32 -9.40 16 15 C 0.13 1.96 5.00 -4.04 -0.02 1.94 16 16 C -0.11 -1.86 2.98 -88.79 -0.26 -2.12 16 17 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 18 C -0.14 -2.49 6.54 -24.58 -0.16 -2.65 16 19 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16 20 N -0.60 -15.29 3.40 -169.84 -0.58 -15.86 16 21 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 22 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 25 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.14 2.80 6.66 -2.90 -0.02 2.78 16 30 H 0.08 0.56 7.55 -51.93 -0.39 0.17 16 31 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.41 7.81 -51.93 -0.41 0.00 16 34 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.40 4.05 7.81 -40.82 -0.32 3.73 16 41 H 0.07 1.16 8.01 -51.93 -0.42 0.75 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -34.49 401.03 -11.04 -45.53 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.08 Total: 1.29 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.87 Total: -3.56 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.34 Total: -51.47 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.76 Total: -14.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.49 -11.04 -45.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.334 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds