Wall clock time and date at job start Tue Mar 31 2020 16:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 O 1.42899 * 109.46944 * 240.00448 * 2 1 3 5 5 C 1.42902 * 113.99984 * 90.00037 * 4 2 1 6 6 C 1.50701 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99950 * 269.72805 * 6 5 4 8 8 C 1.38234 * 119.99951 * 179.74187 * 7 6 5 9 9 C 1.38240 * 119.99967 * 0.55261 * 8 7 6 10 10 C 1.38230 * 119.99894 * 359.70250 * 9 8 7 11 11 C 1.38237 * 120.00211 * 90.00016 * 6 5 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 C 1.52999 * 109.46992 * 179.97438 * 15 14 12 17 17 H 1.09009 * 110.64339 * 305.70001 * 16 15 14 18 18 C 1.55155 * 110.72329 * 182.56119 * 16 15 14 19 19 C 1.54912 * 101.58318 * 206.13572 * 18 16 15 20 20 N 1.47425 * 104.83173 * 37.00531 * 19 18 16 21 21 C 1.36936 * 125.64482 * 155.83404 * 20 19 18 22 22 H 1.08002 * 119.99450 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00526 * 0.03071 * 21 20 19 24 24 N 1.31621 * 119.99894 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00312 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47070 * 89.99941 * 25 23 21 27 27 H 1.48496 * 109.46832 * 209.99878 * 25 23 21 28 28 H 1.48500 * 109.47040 * 329.99859 * 25 23 21 29 29 C 1.47313 * 108.73646 * 335.71945 * 20 19 18 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47399 * 299.99664 * 5 4 2 34 34 H 1.08992 * 109.47058 * 60.00431 * 5 4 2 35 35 H 1.08000 * 119.99870 * 0.02562 * 7 6 5 36 36 H 1.08000 * 120.00394 * 180.27087 * 8 7 6 37 37 H 1.07998 * 120.00087 * 179.71738 * 9 8 7 38 38 H 1.08001 * 120.00435 * 180.02562 * 10 9 8 39 39 H 1.07999 * 119.99916 * 0.02562 * 11 6 5 40 40 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 41 41 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 42 42 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 43 43 H 1.09004 * 111.00081 * 324.20546 * 18 16 15 44 44 H 1.08996 * 111.01074 * 88.01826 * 18 16 15 45 45 H 1.08999 * 110.36835 * 155.84710 * 19 18 16 46 46 H 1.08992 * 110.36428 * 278.16751 * 19 18 16 47 47 H 0.96996 * 120.00427 * 180.02562 * 24 23 21 48 48 H 1.09003 * 110.06154 * 241.87331 * 29 20 19 49 49 H 1.09000 * 109.85548 * 120.60968 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2000 0.1831 -2.2941 6 6 2.7001 -0.6282 -3.4615 7 6 4.0586 -0.7965 -3.6548 8 6 4.5172 -1.5451 -4.7225 9 6 3.6177 -2.1159 -5.6035 10 6 2.2595 -1.9432 -5.4132 11 6 1.8007 -1.1993 -4.3422 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 6 2.1855 -0.9476 3.6505 16 6 1.6714 -0.2294 4.8998 17 1 1.9400 0.8268 4.8738 18 6 2.2195 -0.9035 6.1853 19 6 1.1263 -0.5360 7.2196 20 7 -0.1411 -0.6048 6.4697 21 6 -1.3793 -0.8199 7.0133 22 1 -2.2505 -0.8535 6.3758 23 6 -1.5149 -0.9948 8.3837 24 7 -0.4532 -0.9543 9.1605 25 14 -3.2042 -1.2876 9.1253 26 1 -3.4825 -2.7458 9.1624 27 1 -3.2401 -0.7416 10.5058 28 1 -4.2328 -0.6082 8.2974 29 6 0.1441 -0.4010 5.0388 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2537 0.6549 -2.5589 34 1 2.9319 0.9514 -2.0450 35 1 4.7614 -0.3470 -2.9690 36 1 5.5783 -1.6803 -4.8711 37 1 3.9761 -2.6970 -6.4403 38 1 1.5567 -2.3894 -6.1012 39 1 0.7395 -1.0638 -4.1939 40 1 1.1445 0.5353 2.5435 41 1 1.8217 -1.9751 3.6463 42 1 3.2755 -0.9481 3.6549 43 1 2.2910 -1.9839 6.0597 44 1 3.1835 -0.4805 6.4678 45 1 1.1220 -1.2551 8.0387 46 1 1.2878 0.4726 7.5999 47 1 -0.5478 -1.0769 10.1180 48 1 -0.3637 0.4943 4.6802 49 1 -0.1847 -1.2698 4.4685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663603978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:13 Heat of formation + Delta-G solvation = -54.764706 kcal Electronic energy + Delta-G solvation = -27500.470160 eV Core-core repulsion = 23620.212134 eV Total energy + Delta-G solvation = -3880.258026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.12764 -40.20777 -39.33997 -38.38293 -36.06041 -34.42868 -33.45977 -32.07066 -31.79647 -31.27032 -29.73519 -27.37382 -27.12761 -25.73890 -24.32736 -23.48436 -22.26779 -22.18765 -21.40620 -20.96232 -18.93620 -18.44757 -18.14705 -17.53374 -17.19091 -16.79338 -16.55472 -16.38269 -16.10755 -15.97409 -15.57041 -15.20172 -15.02949 -14.37699 -14.28580 -14.26223 -14.17706 -13.83899 -13.54966 -13.46494 -13.37009 -13.30208 -13.14386 -12.96465 -12.81874 -12.66019 -12.41503 -12.01341 -11.92672 -11.90049 -11.82186 -11.80721 -11.57619 -11.35937 -11.01156 -10.73432 -10.49451 -10.11512 -9.82779 -9.76694 -8.86693 -7.76518 -5.20369 0.31687 0.49455 1.46748 1.48594 1.55971 1.56987 1.90146 2.50077 2.71233 3.18715 3.33089 3.59700 3.68025 3.82703 3.87616 3.88884 3.98794 4.00126 4.06007 4.11387 4.14984 4.28277 4.35588 4.39527 4.46386 4.63422 4.65630 4.70351 4.71482 4.75694 4.78765 4.84289 4.92507 5.06553 5.07210 5.13840 5.14646 5.21816 5.34648 5.42988 5.49378 5.53947 5.60289 5.65650 5.67284 5.84002 6.05341 6.10842 6.33054 6.55652 7.12271 7.22055 7.80253 8.43659 9.25309 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.001809 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.504966 B =15476.930709 C =16077.965318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.074 3.926 3 H 0.122 0.878 4 O -0.382 6.382 5 C 0.097 3.903 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.134 4.134 9 C -0.122 4.122 10 C -0.133 4.133 11 C -0.111 4.111 12 C 0.508 3.492 13 O -0.577 6.577 14 N -0.710 5.710 15 C 0.144 3.856 16 C -0.092 4.092 17 H 0.100 0.900 18 C -0.124 4.124 19 C 0.152 3.848 20 N -0.629 5.629 21 C -0.237 4.237 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.949 5.949 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.269 1.269 29 C 0.137 3.863 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.416 0.584 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.070 0.930 46 H -0.008 1.008 47 H 0.246 0.754 48 H 0.034 0.966 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.195 6.043 -28.839 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 H 0.140 0.860 4 O -0.302 6.302 5 C 0.022 3.978 6 C -0.110 4.110 7 C -0.133 4.133 8 C -0.152 4.152 9 C -0.140 4.140 10 C -0.151 4.151 11 C -0.129 4.129 12 C 0.294 3.706 13 O -0.455 6.455 14 N -0.364 5.364 15 C 0.020 3.980 16 C -0.112 4.112 17 H 0.118 0.882 18 C -0.163 4.163 19 C 0.027 3.973 20 N -0.355 5.355 21 C -0.366 4.366 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.807 3.193 26 H -0.215 1.215 27 H -0.220 1.220 28 H -0.194 1.194 29 C 0.012 3.988 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.253 0.747 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.010 0.990 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.618 5.125 -28.748 30.178 hybrid contribution -1.079 0.164 1.025 1.497 sum 6.539 5.290 -27.723 28.971 Atomic orbital electron populations 1.22262 0.91884 1.03259 1.05122 1.22011 0.96102 0.97014 0.83534 0.86021 1.88108 1.86881 1.35586 1.19587 1.21603 1.01194 0.91435 0.83587 1.19815 0.94064 1.00814 0.96265 1.21317 0.95237 0.98805 0.97990 1.21458 1.00993 0.97746 0.95020 1.21550 0.93486 0.99200 0.99766 1.21485 0.96453 0.98914 0.98227 1.21334 1.00138 0.96782 0.94670 1.21057 0.79668 0.84420 0.85427 1.90703 1.39541 1.28007 1.87293 1.45864 1.53527 1.32404 1.04611 1.21188 0.99036 0.95292 0.82442 1.22285 0.94574 1.00804 0.93494 0.88150 1.22853 0.98778 1.00030 0.94632 1.21723 0.83344 0.97766 0.94466 1.44894 1.03626 1.84328 1.02655 1.19455 0.85282 1.40627 0.91275 0.90168 1.25631 1.01083 1.02898 0.96590 1.70054 1.28341 1.57961 1.03527 0.85066 0.79322 0.77539 0.77341 1.21520 1.22023 1.19382 1.21571 0.94295 0.97639 0.85280 0.89146 0.88929 0.93123 0.89984 0.90982 0.85620 0.84265 0.83866 0.83931 0.84770 0.74719 0.93292 0.90824 0.92217 0.89212 0.91236 0.98995 0.94407 0.94798 0.96217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.42 71.98 0.68 -1.76 16 2 C 0.07 1.37 3.14 29.85 0.09 1.46 16 3 H 0.12 1.37 7.79 -2.39 -0.02 1.35 16 4 O -0.38 -8.96 9.50 -129.94 -1.23 -10.19 16 5 C 0.10 1.55 5.87 71.24 0.42 1.97 16 6 C -0.11 -2.02 5.51 -19.86 -0.11 -2.13 16 7 C -0.12 -2.10 9.70 22.27 0.22 -1.88 16 8 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 9 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 10 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 11 C -0.11 -1.85 9.70 22.27 0.22 -1.63 16 12 C 0.51 13.50 7.23 87.66 0.63 14.13 16 13 O -0.58 -21.52 16.50 16.00 0.26 -21.25 16 14 N -0.71 -16.25 5.32 -463.07 -2.46 -18.72 16 15 C 0.14 3.99 5.00 86.38 0.43 4.43 16 16 C -0.09 -2.80 2.98 -9.61 -0.03 -2.83 16 17 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 18 C -0.12 -4.41 6.54 31.99 0.21 -4.20 16 19 C 0.15 7.37 5.89 86.86 0.51 7.88 16 20 N -0.63 -31.86 3.40 -691.25 -2.35 -34.21 16 21 C -0.24 -13.24 10.28 84.03 0.86 -12.37 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 23 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 24 N -0.95 -56.57 10.09 21.65 0.22 -56.35 16 25 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 C 0.14 5.26 6.66 86.67 0.58 5.84 16 30 H 0.09 1.04 7.55 -2.38 -0.02 1.02 16 31 H 0.09 0.92 7.87 -2.38 -0.02 0.90 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.08 0.90 7.81 -2.39 -0.02 0.88 16 34 H 0.07 0.92 8.03 -2.39 -0.02 0.90 16 35 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.42 7.02 7.81 -92.71 -0.72 6.29 16 41 H 0.05 1.59 8.01 -2.39 -0.02 1.57 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.17 8.05 -2.39 -0.02 2.15 16 44 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.07 3.91 5.87 -2.39 -0.01 3.89 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.02 0.78 7.73 -2.39 -0.02 0.77 16 Total: -1.00 -77.59 401.03 2.51 -75.08 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.21 Total: 17.67 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.85 Total: 0.31 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.60 Total: -109.27 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.97 Total: -31.45 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -77.59 2.51 -75.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.311 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds