Wall clock time and date at job start Tue Mar 31 2020 17:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47248 * 2 1 4 4 O 1.42900 * 109.47252 * 120.00832 * 2 1 3 5 5 C 1.42902 * 113.99726 * 269.99583 * 4 2 1 6 6 C 1.52998 * 109.47119 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.38228 * 119.99983 * 270.21531 * 7 6 5 9 9 C 1.38238 * 120.00110 * 180.21781 * 8 7 6 10 10 C 1.38234 * 119.99675 * 359.52133 * 9 8 7 11 11 C 1.38235 * 120.00220 * 0.28720 * 10 9 8 12 12 C 1.38234 * 119.99892 * 89.99751 * 7 6 5 13 13 C 1.50706 * 109.46726 * 240.00242 * 2 1 3 14 14 O 1.21284 * 120.00011 * 245.00258 * 13 2 1 15 15 N 1.34776 * 120.00131 * 65.00257 * 13 2 1 16 16 C 1.46503 * 120.00026 * 179.97438 * 15 13 2 17 17 H 1.08997 * 110.63689 * 323.31294 * 16 15 13 18 18 C 1.55154 * 110.71856 * 199.97628 * 16 15 13 19 19 C 1.54911 * 101.57986 * 277.13949 * 18 16 15 20 20 N 1.47417 * 104.83283 * 322.98684 * 19 18 16 21 21 C 1.36934 * 125.65099 * 204.16557 * 20 19 18 22 22 H 1.08009 * 120.00027 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00009 * 359.96109 * 21 20 19 24 24 N 1.31614 * 120.00203 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99946 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47063 * 90.00354 * 25 23 21 27 27 H 1.48504 * 109.47042 * 209.99859 * 25 23 21 28 28 H 1.48496 * 109.47048 * 330.00275 * 25 23 21 29 29 C 1.47028 * 108.70240 * 24.13188 * 20 19 18 30 30 H 1.09001 * 109.47129 * 299.99837 * 1 2 3 31 31 H 1.09003 * 109.47008 * 59.99491 * 1 2 3 32 32 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.47189 * 59.99587 * 5 4 2 34 34 H 1.08996 * 109.47163 * 300.00198 * 5 4 2 35 35 H 1.08998 * 109.47065 * 60.00293 * 6 5 4 36 36 H 1.08992 * 109.47195 * 299.99573 * 6 5 4 37 37 H 1.08004 * 120.00281 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.00519 * 179.80752 * 9 8 7 39 39 H 1.07999 * 120.00009 * 180.25939 * 10 9 8 40 40 H 1.07996 * 120.00471 * 179.97438 * 11 10 9 41 41 H 1.08001 * 120.00324 * 0.02562 * 12 7 6 42 42 H 0.97002 * 119.99739 * 359.97438 * 15 13 2 43 43 H 1.09006 * 111.00704 * 35.21017 * 18 16 15 44 44 H 1.08996 * 111.00509 * 159.06264 * 18 16 15 45 45 H 1.09003 * 110.36537 * 204.15417 * 19 18 16 46 46 H 1.08996 * 110.46415 * 81.88129 * 19 18 16 47 47 H 0.96996 * 120.00242 * 179.97438 * 24 23 21 48 48 H 1.08994 * 109.88201 * 239.52189 * 29 20 19 49 49 H 1.09004 * 110.00822 * 118.42708 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7080 -0.6411 3.4791 7 6 2.9130 0.2622 4.6678 8 6 4.1344 0.8787 4.8649 9 6 4.3239 1.7038 5.9577 10 6 3.2888 1.9202 6.8480 11 6 2.0661 1.3068 6.6488 12 6 1.8782 0.4779 5.5586 13 6 2.0322 -0.7104 -1.2306 14 8 2.6528 -1.7467 -1.1217 15 7 1.7918 -0.1941 -2.4521 16 6 2.2806 -0.8844 -3.6483 17 1 3.2554 -1.3345 -3.4607 18 6 2.3436 0.0878 -4.8558 19 6 0.8777 0.0577 -5.3560 20 7 0.4433 -1.3383 -5.1677 21 6 -0.5612 -1.9617 -5.8587 22 1 -0.8042 -2.9924 -5.6459 23 6 -1.2673 -1.2691 -6.8326 24 7 -0.9717 -0.0129 -7.0914 25 14 -2.6371 -2.1197 -7.7758 26 1 -3.9238 -1.9286 -7.0597 27 1 -2.7370 -1.5359 -9.1376 28 1 -2.3392 -3.5708 -7.8799 29 6 1.2676 -1.9508 -4.1155 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.2539 0.6545 2.5589 34 1 2.9320 0.9511 2.0450 35 1 3.6542 -1.1132 3.2145 36 1 1.9758 -1.4091 3.7280 37 1 4.9417 0.7133 4.1668 38 1 5.2791 2.1830 6.1135 39 1 3.4355 2.5681 7.6995 40 1 1.2575 1.4755 7.3445 41 1 0.9229 -0.0012 5.4029 42 1 1.2952 0.6346 -2.5392 43 1 2.6266 1.0906 -4.5358 44 1 3.0252 -0.2834 -5.6211 45 1 0.8311 0.3305 -6.4104 46 1 0.2588 0.7310 -4.7630 47 1 -1.4649 0.4710 -7.7722 48 1 1.7974 -2.8151 -4.5157 49 1 0.6386 -2.2561 -3.2793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713984199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:34 Heat of formation + Delta-G solvation = -35.693177 kcal Electronic energy + Delta-G solvation = -27690.587008 eV Core-core repulsion = 23811.155986 eV Total energy + Delta-G solvation = -3879.431022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -39.97652 -39.60507 -38.07772 -36.91721 -33.97108 -33.81190 -32.14105 -31.23946 -30.98859 -29.12503 -28.62867 -27.23650 -24.85110 -24.27515 -23.43874 -22.92312 -21.28730 -20.60440 -20.20490 -19.72971 -17.43854 -17.22445 -16.95258 -16.64248 -16.08369 -15.73158 -15.38107 -15.16882 -14.70661 -14.65336 -14.36727 -13.82018 -13.75360 -13.56995 -13.41028 -13.15996 -13.01175 -12.86912 -12.52881 -12.32272 -12.12342 -12.00310 -11.65556 -11.61933 -11.39224 -11.30172 -11.18078 -11.06115 -10.88567 -10.76148 -10.39638 -10.12692 -9.97659 -9.90544 -9.60076 -9.30728 -9.26378 -9.07010 -8.73687 -8.60915 -6.84576 -5.67283 -3.07871 0.97097 1.04733 2.82209 2.95271 3.39493 3.43097 3.44932 3.46814 3.87909 4.48130 4.48640 4.55888 4.67449 4.68864 4.79132 4.79696 4.87364 4.95338 5.06567 5.15109 5.17434 5.19271 5.32759 5.44016 5.48218 5.49581 5.53417 5.61495 5.63586 5.73440 5.75441 5.82331 5.86260 6.06690 6.11208 6.16408 6.26061 6.29531 6.36054 6.47665 6.55436 6.65142 6.74126 6.91766 7.08927 7.41276 7.61627 7.77956 7.83875 8.33405 8.49226 9.21183 9.81753 10.46246 11.37071 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.001859 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.288488 B =15057.451567 C =15433.514979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 H 0.083 0.917 4 O -0.356 6.356 5 C 0.066 3.934 6 C -0.080 4.080 7 C -0.080 4.080 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.513 3.487 14 O -0.526 6.526 15 N -0.708 5.708 16 C 0.133 3.867 17 H 0.087 0.913 18 C -0.153 4.153 19 C 0.151 3.849 20 N -0.603 5.603 21 C -0.219 4.219 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.915 3.085 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.127 3.873 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.399 0.601 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.031 0.969 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 7.462 24.432 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.101 0.899 4 O -0.274 6.274 5 C -0.010 4.010 6 C -0.117 4.117 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.137 4.137 10 C -0.143 4.143 11 C -0.137 4.137 12 C -0.133 4.133 13 C 0.298 3.702 14 O -0.401 6.401 15 N -0.361 5.361 16 C 0.028 3.972 17 H 0.105 0.895 18 C -0.192 4.192 19 C 0.027 3.973 20 N -0.329 5.329 21 C -0.347 4.347 22 H 0.095 0.905 23 C -0.208 4.208 24 N -0.574 5.574 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.000 4.000 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.234 0.766 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.642 6.523 24.343 26.643 hybrid contribution -1.134 0.338 -0.411 1.253 sum 7.508 6.861 23.932 26.004 Atomic orbital electron populations 1.22229 0.93348 1.04139 1.03111 1.21889 0.95230 0.96024 0.85627 0.89910 1.88030 1.86568 1.34036 1.18815 1.22530 0.99560 0.92835 0.86108 1.20465 1.03453 0.96997 0.90795 1.19766 0.94010 0.97972 0.96271 1.21134 0.97050 0.97157 0.97910 1.21171 0.99090 0.98607 0.94859 1.21178 0.93521 1.00037 0.99531 1.21168 0.97466 0.97327 0.97786 1.21125 0.98713 0.98735 0.94685 1.20254 0.80039 0.85690 0.84237 1.90700 1.39894 1.22990 1.86512 1.45928 1.57336 1.27658 1.05175 1.21994 0.97346 0.94120 0.83728 0.89469 1.23339 1.02117 0.97587 0.96133 1.21945 0.86716 0.85570 1.03114 1.44508 1.38610 1.09301 1.40520 1.19098 1.07470 0.95432 1.12700 0.90519 1.24765 1.00065 0.96217 0.99732 1.69771 1.43026 1.08843 1.35711 0.86064 0.81746 0.78496 0.79164 1.21711 1.21664 1.20697 1.21683 0.92320 0.94202 0.91752 0.91504 0.90516 0.90907 0.93032 0.93129 0.89801 0.89859 0.85865 0.86023 0.86164 0.86030 0.85881 0.76624 0.91730 0.90536 0.87405 0.97166 0.93784 0.95111 0.95586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.48 37.16 0.35 -1.58 16 2 C 0.07 0.93 3.13 -27.88 -0.09 0.84 16 3 H 0.08 0.81 7.79 -51.93 -0.40 0.41 16 4 O -0.36 -4.83 9.53 -55.09 -0.52 -5.35 16 5 C 0.07 0.65 5.73 37.16 0.21 0.87 16 6 C -0.08 -0.72 5.71 -27.88 -0.16 -0.88 16 7 C -0.08 -0.68 5.13 -104.62 -0.54 -1.21 16 8 C -0.11 -0.91 9.70 -39.59 -0.38 -1.30 16 9 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 10 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 11 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 12 C -0.11 -0.90 9.70 -39.58 -0.38 -1.28 16 13 C 0.51 8.39 7.18 -10.98 -0.08 8.31 16 14 O -0.53 -10.75 16.23 -14.31 -0.23 -10.98 16 15 N -0.71 -11.16 5.08 -52.03 -0.26 -11.42 16 16 C 0.13 2.40 3.25 -66.10 -0.21 2.19 16 17 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 18 C -0.15 -2.72 6.64 -24.58 -0.16 -2.88 16 19 C 0.15 3.49 5.87 -2.53 -0.01 3.47 16 20 N -0.60 -15.31 3.39 -170.08 -0.58 -15.88 16 21 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 22 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 23 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -26.40 10.09 55.49 0.56 -25.84 16 25 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 29 C 0.13 2.80 6.98 -3.06 -0.02 2.78 16 30 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.45 7.87 -51.92 -0.41 0.04 16 34 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.40 5.49 8.40 -40.82 -0.34 5.15 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -33.29 402.46 -11.05 -44.34 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.13 Total: 3.17 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.92 Total: -1.14 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.28 Total: -53.14 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.76 Total: -16.33 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.29 -11.05 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713984199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.647 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds