Wall clock time and date at job start Tue Mar 31 2020 17:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47248 * 2 1 4 4 O 1.42900 * 109.47252 * 120.00832 * 2 1 3 5 5 C 1.42902 * 113.99726 * 269.99583 * 4 2 1 6 6 C 1.52998 * 109.47119 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.38228 * 119.99983 * 270.21531 * 7 6 5 9 9 C 1.38238 * 120.00110 * 180.21781 * 8 7 6 10 10 C 1.38234 * 119.99675 * 359.52133 * 9 8 7 11 11 C 1.38235 * 120.00220 * 0.28720 * 10 9 8 12 12 C 1.38234 * 119.99892 * 89.99751 * 7 6 5 13 13 C 1.50706 * 109.46726 * 240.00242 * 2 1 3 14 14 O 1.21284 * 120.00011 * 245.00258 * 13 2 1 15 15 N 1.34776 * 120.00131 * 65.00257 * 13 2 1 16 16 C 1.46503 * 120.00026 * 179.97438 * 15 13 2 17 17 H 1.08997 * 110.63689 * 323.31294 * 16 15 13 18 18 C 1.55154 * 110.71856 * 199.97628 * 16 15 13 19 19 C 1.54911 * 101.57986 * 277.13949 * 18 16 15 20 20 N 1.47417 * 104.83283 * 322.98684 * 19 18 16 21 21 C 1.36934 * 125.65099 * 204.16557 * 20 19 18 22 22 H 1.08009 * 120.00027 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00009 * 359.96109 * 21 20 19 24 24 N 1.31614 * 120.00203 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99946 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47063 * 90.00354 * 25 23 21 27 27 H 1.48504 * 109.47042 * 209.99859 * 25 23 21 28 28 H 1.48496 * 109.47048 * 330.00275 * 25 23 21 29 29 C 1.47028 * 108.70240 * 24.13188 * 20 19 18 30 30 H 1.09001 * 109.47129 * 299.99837 * 1 2 3 31 31 H 1.09003 * 109.47008 * 59.99491 * 1 2 3 32 32 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.47189 * 59.99587 * 5 4 2 34 34 H 1.08996 * 109.47163 * 300.00198 * 5 4 2 35 35 H 1.08998 * 109.47065 * 60.00293 * 6 5 4 36 36 H 1.08992 * 109.47195 * 299.99573 * 6 5 4 37 37 H 1.08004 * 120.00281 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.00519 * 179.80752 * 9 8 7 39 39 H 1.07999 * 120.00009 * 180.25939 * 10 9 8 40 40 H 1.07996 * 120.00471 * 179.97438 * 11 10 9 41 41 H 1.08001 * 120.00324 * 0.02562 * 12 7 6 42 42 H 0.97002 * 119.99739 * 359.97438 * 15 13 2 43 43 H 1.09006 * 111.00704 * 35.21017 * 18 16 15 44 44 H 1.08996 * 111.00509 * 159.06264 * 18 16 15 45 45 H 1.09003 * 110.36537 * 204.15417 * 19 18 16 46 46 H 1.08996 * 110.46415 * 81.88129 * 19 18 16 47 47 H 0.96996 * 120.00242 * 179.97438 * 24 23 21 48 48 H 1.08994 * 109.88201 * 239.52189 * 29 20 19 49 49 H 1.09004 * 110.00822 * 118.42708 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7080 -0.6411 3.4791 7 6 2.9130 0.2622 4.6678 8 6 4.1344 0.8787 4.8649 9 6 4.3239 1.7038 5.9577 10 6 3.2888 1.9202 6.8480 11 6 2.0661 1.3068 6.6488 12 6 1.8782 0.4779 5.5586 13 6 2.0322 -0.7104 -1.2306 14 8 2.6528 -1.7467 -1.1217 15 7 1.7918 -0.1941 -2.4521 16 6 2.2806 -0.8844 -3.6483 17 1 3.2554 -1.3345 -3.4607 18 6 2.3436 0.0878 -4.8558 19 6 0.8777 0.0577 -5.3560 20 7 0.4433 -1.3383 -5.1677 21 6 -0.5612 -1.9617 -5.8587 22 1 -0.8042 -2.9924 -5.6459 23 6 -1.2673 -1.2691 -6.8326 24 7 -0.9717 -0.0129 -7.0914 25 14 -2.6371 -2.1197 -7.7758 26 1 -3.9238 -1.9286 -7.0597 27 1 -2.7370 -1.5359 -9.1376 28 1 -2.3392 -3.5708 -7.8799 29 6 1.2676 -1.9508 -4.1155 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.2539 0.6545 2.5589 34 1 2.9320 0.9511 2.0450 35 1 3.6542 -1.1132 3.2145 36 1 1.9758 -1.4091 3.7280 37 1 4.9417 0.7133 4.1668 38 1 5.2791 2.1830 6.1135 39 1 3.4355 2.5681 7.6995 40 1 1.2575 1.4755 7.3445 41 1 0.9229 -0.0012 5.4029 42 1 1.2952 0.6346 -2.5392 43 1 2.6266 1.0906 -4.5358 44 1 3.0252 -0.2834 -5.6211 45 1 0.8311 0.3305 -6.4104 46 1 0.2588 0.7310 -4.7630 47 1 -1.4649 0.4710 -7.7722 48 1 1.7974 -2.8151 -4.5157 49 1 0.6386 -2.2561 -3.2793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713984199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:27 Heat of formation + Delta-G solvation = -54.593742 kcal Electronic energy + Delta-G solvation = -27691.406598 eV Core-core repulsion = 23811.155986 eV Total energy + Delta-G solvation = -3880.250612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21639 -40.24019 -39.31306 -38.33400 -35.52816 -34.64776 -33.75637 -32.20245 -31.75995 -30.84926 -29.33417 -28.92429 -26.58092 -25.46799 -24.27935 -23.44950 -22.17296 -21.96484 -21.74617 -21.19875 -19.00988 -18.31340 -18.17756 -17.49689 -17.16509 -16.84171 -16.61946 -16.22401 -15.88476 -15.80999 -15.61541 -15.43015 -14.84163 -14.47289 -14.43843 -14.24678 -14.01897 -13.83054 -13.68946 -13.56400 -13.40587 -13.29251 -13.00035 -12.94558 -12.80256 -12.40136 -12.32100 -12.17972 -12.06660 -12.01376 -11.93621 -11.83813 -11.80416 -11.46400 -10.98703 -10.75063 -10.48001 -10.10970 -9.80910 -9.63427 -8.89109 -7.78342 -5.21657 0.41703 0.51121 1.46798 1.47627 1.55340 1.56859 1.85383 2.48919 2.76140 2.99467 3.31564 3.59501 3.72832 3.81579 3.87807 3.91751 3.95482 4.00435 4.08494 4.18872 4.21216 4.28805 4.30197 4.32612 4.44382 4.62267 4.62774 4.65101 4.65825 4.74124 4.75299 4.90822 4.93364 4.97525 5.00255 5.04995 5.16587 5.19234 5.19767 5.44065 5.55161 5.58839 5.64269 5.64536 5.72274 5.81300 6.07806 6.13241 6.32165 6.56949 7.11798 7.22359 7.77210 8.40423 9.22985 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.001859 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.288488 B =15057.451567 C =15433.514979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.119 0.881 4 O -0.385 6.385 5 C 0.065 3.935 6 C -0.075 4.075 7 C -0.091 4.091 8 C -0.128 4.128 9 C -0.127 4.127 10 C -0.130 4.130 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.510 3.490 14 O -0.572 6.572 15 N -0.700 5.700 16 C 0.146 3.854 17 H 0.094 0.906 18 C -0.131 4.131 19 C 0.154 3.846 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.060 4.060 24 N -0.943 5.943 25 Si 0.978 3.022 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.275 1.275 29 C 0.126 3.874 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.412 0.588 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.001 0.999 47 H 0.249 0.751 48 H 0.024 0.976 49 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.463 9.079 25.842 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 H 0.137 0.863 4 O -0.304 6.304 5 C -0.011 4.011 6 C -0.113 4.113 7 C -0.091 4.091 8 C -0.146 4.146 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.144 4.144 13 C 0.297 3.703 14 O -0.450 6.450 15 N -0.353 5.353 16 C 0.040 3.960 17 H 0.112 0.888 18 C -0.170 4.170 19 C 0.029 3.971 20 N -0.347 5.347 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.253 4.253 24 N -0.592 5.592 25 Si 0.806 3.194 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.200 1.200 29 C 0.000 4.000 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.248 0.752 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.019 0.981 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 8.808 8.167 25.772 28.434 hybrid contribution -1.181 -0.180 -0.789 1.431 sum 7.627 7.987 24.984 27.316 Atomic orbital electron populations 1.22212 0.92399 1.03046 1.04679 1.21911 0.95697 0.96859 0.83686 0.86327 1.88005 1.86781 1.35782 1.19789 1.22696 1.00631 0.92683 0.85089 1.20398 1.02780 0.97053 0.91044 1.19755 0.94612 0.98427 0.96332 1.21304 0.97126 0.97564 0.98573 1.21444 1.00066 0.98382 0.94555 1.21503 0.93300 0.99989 0.99997 1.21454 0.98235 0.96914 0.97809 1.21310 0.98981 0.99121 0.94950 1.21030 0.78902 0.85135 0.85273 1.90676 1.42043 1.25129 1.87199 1.45825 1.57133 1.27791 1.04526 1.21736 0.96292 0.93264 0.84692 0.88785 1.23178 0.98443 0.99612 0.95750 1.21788 0.89850 0.84227 1.01234 1.44757 1.38536 1.10373 1.41068 1.19366 1.08611 0.95630 1.13455 0.91114 1.25528 1.02228 0.97007 1.00559 1.69997 1.43612 1.09722 1.35874 0.85096 0.78929 0.77761 0.77619 1.21404 1.21546 1.20036 1.21755 0.92500 0.95366 0.90411 0.88796 0.90071 0.93314 0.91519 0.92191 0.90761 0.90270 0.85423 0.84327 0.84153 0.84235 0.85112 0.75177 0.87977 0.89997 0.90593 0.98135 0.94153 0.95853 0.97326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 9.48 71.98 0.68 -2.79 16 2 C 0.08 1.85 3.13 29.85 0.09 1.94 16 3 H 0.12 1.92 7.79 -2.39 -0.02 1.90 16 4 O -0.38 -10.03 9.53 -129.99 -1.24 -11.27 16 5 C 0.07 1.18 5.73 71.98 0.41 1.59 16 6 C -0.08 -1.32 5.71 29.85 0.17 -1.15 16 7 C -0.09 -1.45 5.13 -19.87 -0.10 -1.56 16 8 C -0.13 -1.90 9.70 22.27 0.22 -1.69 16 9 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 10 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 11 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 12 C -0.13 -1.80 9.70 22.27 0.22 -1.59 16 13 C 0.51 16.22 7.18 87.66 0.63 16.85 16 14 O -0.57 -23.49 16.23 15.95 0.26 -23.23 16 15 N -0.70 -21.06 5.08 -436.92 -2.22 -23.27 16 16 C 0.15 5.12 3.25 46.18 0.15 5.27 16 17 H 0.09 3.26 7.69 -2.39 -0.02 3.24 16 18 C -0.13 -4.44 6.64 31.99 0.21 -4.22 16 19 C 0.15 7.07 5.87 86.86 0.51 7.58 16 20 N -0.62 -31.96 3.39 -692.00 -2.35 -34.31 16 21 C -0.24 -13.73 10.27 84.03 0.86 -12.86 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 24 N -0.94 -54.38 10.09 21.65 0.22 -54.16 16 25 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 29 C 0.13 5.63 6.98 86.73 0.61 6.23 16 30 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 31 H 0.08 1.62 7.92 -2.39 -0.02 1.60 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.00 7.87 -2.38 -0.02 0.98 16 34 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 35 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 36 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 37 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 41 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.41 10.43 8.40 -92.71 -0.78 9.66 16 43 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 44 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.08 4.03 5.87 -2.39 -0.01 4.02 16 46 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 Total: -1.00 -73.29 402.46 2.64 -70.65 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.15 Total: 21.29 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.80 Total: 6.67 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.35 Total: -111.74 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.98 Total: -34.50 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -73.29 2.64 -70.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713984199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.055 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds