Wall clock time and date at job start Tue Mar 31 2020 18:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47318 * 2 1 4 4 C 1.36941 * 119.99348 * 275.30575 * 3 2 1 5 5 H 1.07999 * 120.00056 * 37.58133 * 4 3 2 6 6 C 1.38817 * 119.99810 * 217.57685 * 4 3 2 7 7 N 1.31614 * 119.99657 * 21.42493 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.42813 * 6 4 3 9 9 H 1.48496 * 109.47136 * 89.99817 * 8 6 4 10 10 H 1.48501 * 109.47042 * 210.00069 * 8 6 4 11 11 H 1.48497 * 109.46844 * 329.99995 * 8 6 4 12 12 C 1.46496 * 120.00679 * 95.30490 * 3 2 1 13 13 C 1.53005 * 109.47278 * 270.00144 * 12 3 2 14 14 C 1.52989 * 109.47265 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.47449 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00530 * 180.02562 * 15 14 13 17 17 O 1.21551 * 120.00044 * 359.97438 * 16 15 14 18 18 C 1.47849 * 120.00105 * 180.27150 * 16 15 14 19 19 C 1.39463 * 120.01298 * 359.44870 * 18 16 15 20 20 C 1.37933 * 119.69450 * 179.79052 * 19 18 16 21 21 C 1.38210 * 120.05931 * 0.58632 * 20 19 18 22 22 C 1.38743 * 120.61122 * 359.76813 * 21 20 19 23 23 C 1.37673 * 119.86812 * 359.76742 * 22 21 20 24 24 C 1.50718 * 121.42206 * 180.63108 * 23 22 21 25 25 C 1.52971 * 109.78450 * 342.81948 * 24 23 22 26 26 O 1.43209 * 108.47632 * 49.12357 * 25 24 23 27 27 C 1.42722 * 113.13596 * 289.45070 * 26 25 24 28 28 H 1.09005 * 109.46372 * 60.00587 * 1 2 3 29 29 H 1.08997 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47255 * 300.00874 * 1 2 3 31 31 H 1.08995 * 109.47255 * 239.99126 * 2 1 3 32 32 H 1.09005 * 109.46372 * 119.99413 * 2 1 3 33 33 H 0.97002 * 119.99686 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47464 * 150.00010 * 12 3 2 35 35 H 1.09003 * 109.46888 * 29.99855 * 12 3 2 36 36 H 1.09005 * 109.46817 * 59.99377 * 13 12 3 37 37 H 1.08994 * 109.46923 * 299.99994 * 13 12 3 38 38 H 1.08998 * 109.47506 * 59.99693 * 14 13 12 39 39 H 1.09003 * 109.47140 * 299.99857 * 14 13 12 40 40 H 0.97004 * 119.99870 * 359.97438 * 15 14 13 41 41 H 1.07993 * 120.14790 * 0.02630 * 19 18 16 42 42 H 1.08002 * 119.97082 * 180.32579 * 20 19 18 43 43 H 1.08010 * 119.69142 * 179.75394 * 21 20 19 44 44 H 1.09003 * 109.41587 * 102.91021 * 24 23 22 45 45 H 1.08998 * 109.42093 * 222.72064 * 24 23 22 46 46 H 1.08997 * 109.62968 * 289.42666 * 25 24 23 47 47 H 1.09001 * 109.80292 * 168.91720 * 25 24 23 48 48 H 1.09002 * 109.33938 * 291.62828 * 27 26 25 49 49 H 1.09006 * 109.33761 * 172.11515 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0631 -1.1809 5 1 1.4106 1.9276 -1.9628 6 6 3.2113 2.9287 -1.3730 7 7 4.3027 2.7979 -0.6491 8 14 3.0996 4.2792 -2.6588 9 1 2.5378 5.5066 -2.0399 10 1 4.4552 4.5692 -3.1911 11 1 2.2169 3.8353 -3.7673 12 6 2.3732 2.0328 1.2632 13 6 1.1425 2.7385 1.8364 14 6 1.5129 3.4184 3.1558 15 7 0.3345 4.0936 3.7050 16 6 0.4242 4.7646 4.8703 17 8 1.4827 4.8093 5.4661 18 6 -0.7667 5.4409 5.4275 19 6 -1.9801 5.3944 4.7416 20 6 -3.0880 6.0240 5.2696 21 6 -2.9909 6.7076 6.4669 22 6 -1.7857 6.7650 7.1518 23 6 -0.6753 6.1325 6.6398 24 6 0.6476 6.1605 7.3615 25 6 0.6457 7.2811 8.4028 26 8 -0.5534 7.1776 9.1788 27 6 -1.7268 7.5318 8.4477 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 5.0489 3.4030 -0.7830 34 1 3.1616 2.7641 1.0858 35 1 2.7254 1.2835 1.9721 36 1 0.3540 2.0070 2.0137 37 1 0.7903 3.4877 1.1274 38 1 2.3016 4.1497 2.9789 39 1 1.8649 2.6688 3.8646 40 1 -0.5103 4.0583 3.2294 41 1 -2.0528 4.8646 3.8034 42 1 -4.0312 5.9863 4.7448 43 1 -3.8613 7.2018 6.8729 44 1 0.8093 5.2041 7.8588 45 1 1.4487 6.3345 6.6433 46 1 0.6746 8.2479 7.9003 47 1 1.5136 7.1810 9.0546 48 1 -1.7103 8.6006 8.2342 49 1 -2.6084 7.2991 9.0451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731311821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:19 Heat of formation + Delta-G solvation = -61.159359 kcal Electronic energy + Delta-G solvation = -28274.799081 eV Core-core repulsion = 24394.263762 eV Total energy + Delta-G solvation = -3880.535319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.80418 -40.23297 -38.42433 -38.16858 -36.35397 -33.85877 -33.83466 -33.41980 -32.31210 -30.76474 -30.07172 -27.22778 -26.58250 -25.64789 -24.71709 -24.18643 -22.60913 -22.09853 -21.51607 -20.90691 -18.73256 -18.62915 -17.60323 -17.23608 -17.06906 -16.89291 -16.69707 -16.49695 -16.21808 -15.86736 -15.66101 -15.34180 -15.09479 -14.90840 -14.38691 -14.29472 -14.17149 -14.06808 -13.65488 -13.31792 -13.25140 -13.19195 -12.98475 -12.77793 -12.74862 -12.68676 -12.58668 -12.45657 -12.30865 -12.13992 -11.92533 -11.64380 -11.46827 -11.25998 -11.05339 -10.50722 -10.44527 -10.25349 -9.79922 -9.66427 -8.55601 -7.81325 -5.45734 -0.21732 0.26093 1.44708 1.47343 1.55263 1.77978 2.08332 2.50559 2.72677 2.90021 3.23668 3.58129 3.60630 3.65591 3.67665 3.89380 4.02355 4.13411 4.18316 4.27680 4.30893 4.38105 4.44047 4.49391 4.52430 4.54757 4.71198 4.72893 4.77902 4.78419 4.80408 4.88308 4.92719 4.97868 5.02974 5.08412 5.15345 5.27671 5.33063 5.36433 5.38241 5.44369 5.51858 5.60089 5.69417 5.83252 5.85877 6.09410 6.47350 6.47870 7.12691 7.18547 7.88188 8.40845 9.13394 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002421 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.171891 B =11564.678259 C =11899.705046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.262 4.262 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.285 1.285 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.151 3.849 13 C -0.123 4.123 14 C 0.134 3.866 15 N -0.711 5.711 16 C 0.547 3.453 17 O -0.571 6.571 18 C -0.157 4.157 19 C -0.085 4.085 20 C -0.126 4.126 21 C -0.078 4.078 22 C -0.142 4.142 23 C -0.039 4.039 24 C -0.116 4.116 25 C 0.059 3.941 26 O -0.394 6.394 27 C 0.099 3.901 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.411 0.589 41 H 0.144 0.856 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 8.985 16.516 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.393 4.393 5 H 0.074 0.926 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.212 1.212 10 H -0.223 1.223 11 H -0.192 1.192 12 C 0.024 3.976 13 C -0.163 4.163 14 C 0.010 3.990 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.452 6.452 18 C -0.160 4.160 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.095 4.095 22 C -0.142 4.142 23 C -0.040 4.040 24 C -0.152 4.152 25 C -0.017 4.017 26 O -0.312 6.312 27 C 0.023 3.977 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.248 0.752 41 H 0.162 0.838 42 H 0.181 0.819 43 H 0.183 0.817 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.101 0.899 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.282 8.973 17.070 25.895 hybrid contribution 0.422 0.445 -1.480 1.602 sum -16.860 9.418 15.590 24.819 Atomic orbital electron populations 1.22168 0.97199 1.00798 1.00856 1.21001 0.93894 0.85675 0.98601 1.43996 1.76459 1.09582 1.02277 1.19189 1.04070 1.21206 0.94834 0.92636 1.25863 0.94011 1.03357 1.00176 1.70133 1.03808 1.38016 1.44262 0.85476 0.76575 0.80076 0.79606 1.21209 1.22296 1.19211 1.20685 0.95234 0.96095 0.85568 1.22171 1.00774 0.99537 0.93786 1.21160 0.87310 0.95528 0.95001 1.45928 1.14429 1.52918 1.22998 1.18753 0.88444 0.78485 0.80716 1.90696 1.31703 1.62128 1.60686 1.19840 0.94166 1.04212 0.97748 1.21597 0.91508 0.97798 0.99458 1.21449 0.99277 0.97295 0.96353 1.21619 0.97089 0.96587 0.94247 1.20518 0.93517 1.00910 0.99289 1.19745 0.96055 0.95081 0.93080 1.21293 0.95186 1.00318 0.98446 1.22799 0.88076 0.97177 0.93674 1.88035 1.15494 1.89531 1.38180 1.21686 0.89269 0.97789 0.89006 0.94415 0.91653 0.93031 0.95252 0.93785 0.94035 0.92226 0.95438 0.91110 0.92889 0.93615 0.92057 0.75162 0.83795 0.81872 0.81708 0.91277 0.88931 0.91723 0.87149 0.89865 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 10.21 71.98 0.73 -4.23 16 2 C 0.13 5.44 6.44 86.38 0.56 6.00 16 3 N -0.60 -29.11 2.43 -702.00 -1.71 -30.82 16 4 C -0.26 -14.05 9.45 84.03 0.79 -13.25 16 5 H 0.06 2.97 7.92 -2.91 -0.02 2.94 16 6 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 7 N -0.92 -53.62 11.47 21.65 0.25 -53.37 16 8 Si 0.95 44.17 29.61 68.60 2.03 46.20 16 9 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.15 6.88 5.33 86.38 0.46 7.34 16 13 C -0.12 -4.43 5.65 30.59 0.17 -4.26 16 14 C 0.13 4.56 5.67 86.38 0.49 5.05 16 15 N -0.71 -20.22 5.50 -466.00 -2.57 -22.78 16 16 C 0.55 16.95 7.73 86.79 0.67 17.62 16 17 O -0.57 -21.41 13.17 -3.87 -0.05 -21.46 16 18 C -0.16 -3.93 5.88 -20.04 -0.12 -4.05 16 19 C -0.09 -1.54 9.54 22.49 0.21 -1.32 16 20 C -0.13 -1.64 10.03 22.19 0.22 -1.42 16 21 C -0.08 -0.97 9.66 22.38 0.22 -0.75 16 22 C -0.14 -2.54 5.80 -19.88 -0.12 -2.66 16 23 C -0.04 -0.94 5.81 -19.60 -0.11 -1.05 16 24 C -0.12 -2.98 4.55 29.84 0.14 -2.84 16 25 C 0.06 1.17 6.85 71.97 0.49 1.66 16 26 O -0.39 -8.01 10.80 -148.98 -1.61 -9.62 16 27 C 0.10 1.40 6.66 71.23 0.47 1.88 16 28 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.60 6.64 -2.39 -0.02 1.59 16 31 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.04 1.68 7.83 -2.38 -0.02 1.66 16 33 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.06 3.19 5.52 -2.39 -0.01 3.18 16 35 H 0.03 1.20 7.86 -2.39 -0.02 1.18 16 36 H 0.07 2.29 6.64 -2.38 -0.02 2.28 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.41 9.21 6.50 -92.71 -0.60 8.61 16 41 H 0.14 2.03 6.39 -2.91 -0.02 2.01 16 42 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 43 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 45 H 0.09 2.79 5.99 -2.39 -0.01 2.77 16 46 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 47 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -70.11 389.64 2.40 -67.71 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.35 Total: 22.01 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.71 Total: 2.12 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.03 Total: -106.97 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.66 Total: -31.07 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.11 2.40 -67.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731311821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.550 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds