Wall clock time and date at job start Tue Mar 31 2020 17:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46843 * 2 1 4 4 C 1.36934 * 120.00334 * 275.72517 * 3 2 1 5 5 H 1.07999 * 120.00014 * 34.30296 * 4 3 2 6 6 C 1.38812 * 120.00020 * 214.30690 * 4 3 2 7 7 N 1.31628 * 120.00011 * 12.66636 * 6 4 3 8 8 Si 1.86797 * 120.00059 * 192.66987 * 6 4 3 9 9 H 1.48497 * 109.47272 * 89.99946 * 8 6 4 10 10 H 1.48502 * 109.46927 * 209.99817 * 8 6 4 11 11 H 1.48503 * 109.47096 * 329.99841 * 8 6 4 12 12 C 1.46505 * 119.99839 * 95.72421 * 3 2 1 13 13 H 1.08996 * 109.47523 * 180.71665 * 12 3 2 14 14 C 1.53004 * 109.47015 * 60.71422 * 12 3 2 15 15 C 1.52997 * 109.47179 * 300.71981 * 12 3 2 16 16 N 1.46509 * 109.46794 * 304.99975 * 15 12 3 17 17 C 1.34776 * 119.99854 * 180.02562 * 16 15 12 18 18 O 1.21284 * 120.00437 * 5.04077 * 17 16 15 19 19 C 1.50702 * 119.99782 * 185.05062 * 17 16 15 20 20 H 1.08993 * 109.39955 * 24.62461 * 19 17 16 21 21 C 1.53070 * 109.43708 * 144.52394 * 19 17 16 22 22 C 1.53412 * 108.29856 * 168.21495 * 21 19 17 23 23 O 1.42825 * 108.36650 * 295.25021 * 22 21 19 24 24 C 1.35849 * 117.84730 * 49.20149 * 23 22 21 25 25 C 1.39150 * 118.49079 * 162.90654 * 24 23 22 26 26 C 1.37972 * 120.21162 * 179.79207 * 25 24 23 27 27 C 1.38285 * 119.95681 * 359.97438 * 26 25 24 28 28 C 1.38108 * 119.98711 * 0.09952 * 27 26 25 29 29 C 1.38372 * 121.80972 * 342.85636 * 24 23 22 30 30 H 1.08997 * 109.47375 * 299.99391 * 1 2 3 31 31 H 1.09000 * 109.47298 * 60.00174 * 1 2 3 32 32 H 1.08998 * 109.46726 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47375 * 240.00609 * 2 1 3 34 34 H 1.09000 * 109.47298 * 119.99826 * 2 1 3 35 35 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47174 * 300.00457 * 14 12 3 37 37 H 1.09003 * 109.47215 * 60.00223 * 14 12 3 38 38 H 1.08998 * 109.46775 * 180.02562 * 14 12 3 39 39 H 1.09003 * 109.47480 * 185.00178 * 15 12 3 40 40 H 1.08993 * 109.47507 * 64.99286 * 15 12 3 41 41 H 0.96996 * 120.00093 * 359.97438 * 16 15 12 42 42 H 1.09003 * 109.69713 * 48.51984 * 21 19 17 43 43 H 1.08996 * 109.69641 * 287.91897 * 21 19 17 44 44 H 1.09002 * 109.68465 * 175.52847 * 22 21 19 45 45 H 1.09002 * 109.68425 * 54.96812 * 22 21 19 46 46 H 1.07997 * 119.89517 * 359.80349 * 25 24 23 47 47 H 1.07994 * 120.01720 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.00870 * 180.11637 * 27 26 25 49 49 H 1.07999 * 119.84195 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0663 -1.1799 5 1 1.4272 1.8932 -1.9771 6 6 3.1631 2.9830 -1.3515 7 7 4.1630 3.0182 -0.4963 8 14 3.1274 4.1669 -2.7960 9 1 2.4189 5.4103 -2.3995 10 1 4.5178 4.4968 -3.2000 11 1 2.4171 3.5348 -3.9367 12 6 2.3817 2.0297 1.2625 13 1 2.7081 3.0508 1.0657 14 6 3.5181 1.2503 1.9275 15 6 1.1669 2.0527 2.1922 16 7 0.0410 2.6945 1.5087 17 6 -1.1426 2.8280 2.1394 18 8 -1.2505 2.5008 3.3022 19 6 -2.3320 3.3838 1.3995 20 1 -2.2053 3.2135 0.3304 21 6 -3.6044 2.6816 1.8800 22 6 -4.8145 3.4560 1.3419 23 8 -4.8172 4.7553 1.9348 24 6 -3.6601 5.4666 1.9100 25 6 -3.7184 6.8373 2.1425 26 6 -2.5643 7.5934 2.1298 27 6 -1.3450 6.9883 1.8858 28 6 -1.2836 5.6283 1.6531 29 6 -2.4390 4.8646 1.6623 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8816 3.6586 -0.6164 36 1 3.1917 0.2291 2.1242 37 1 4.3836 1.2338 1.2651 38 1 3.7881 1.7324 2.8670 39 1 1.4108 2.6127 3.0950 40 1 0.8949 1.0318 2.4602 41 1 0.1477 3.0239 0.6027 42 1 -3.6295 2.6719 2.9697 43 1 -3.6248 1.6593 1.5024 44 1 -5.7328 2.9307 1.6042 45 1 -4.7398 3.5471 0.2582 46 1 -4.6700 7.3108 2.3338 47 1 -2.6131 8.6569 2.3111 48 1 -0.4409 7.5790 1.8775 49 1 -0.3302 5.1583 1.4623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155856488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:47 Heat of formation + Delta-G solvation = -34.644285 kcal Electronic energy + Delta-G solvation = -30287.564623 eV Core-core repulsion = 26408.179084 eV Total energy + Delta-G solvation = -3879.385539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.01295 -39.08002 -37.50848 -36.96673 -34.15335 -33.69025 -31.91715 -31.11116 -30.63919 -30.21273 -28.22637 -26.91830 -24.98256 -23.98264 -23.68679 -22.57389 -21.73981 -20.56145 -19.62339 -19.17482 -17.93547 -17.12875 -16.74345 -16.54261 -16.09373 -15.62374 -15.00274 -14.77672 -14.75159 -14.29170 -14.00114 -13.76097 -13.72721 -13.36042 -13.25899 -13.06127 -12.74731 -12.50846 -12.34374 -12.07937 -11.93503 -11.84937 -11.53015 -11.51482 -11.09551 -11.05393 -10.97220 -10.92021 -10.86923 -10.70036 -10.63885 -10.33953 -10.11870 -9.66293 -9.51349 -9.47249 -8.77263 -8.56371 -8.42883 -8.16867 -6.68726 -5.91528 -3.43786 1.27368 1.42890 2.96287 3.20293 3.27666 3.36565 3.37209 3.57442 3.86952 4.37577 4.49854 4.61248 4.67053 4.91129 5.05951 5.08509 5.19736 5.24468 5.25807 5.34847 5.40735 5.44480 5.51726 5.56197 5.81213 5.88668 5.97929 6.00752 6.06582 6.16057 6.22177 6.26575 6.34272 6.43242 6.46169 6.52025 6.54978 6.60397 6.65729 6.75251 6.80749 6.87008 7.03430 7.11174 7.38229 7.47689 7.57153 7.72437 8.09367 8.40198 8.67318 9.13031 9.73017 10.30277 11.14676 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.004328 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.969178 B = 6468.006203 C = 7466.149972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.262 4.262 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.176 3.824 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.101 3.899 16 N -0.699 5.699 17 C 0.519 3.481 18 O -0.551 6.551 19 C -0.065 4.065 20 H 0.102 0.898 21 C -0.145 4.145 22 C 0.064 3.936 23 O -0.317 6.317 24 C 0.138 3.862 25 C -0.153 4.153 26 C -0.087 4.087 27 C -0.149 4.149 28 C -0.078 4.078 29 C -0.145 4.145 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.255 0.745 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.411 0.589 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.125 0.875 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 3.438 3.312 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.025 4.025 16 N -0.350 5.350 17 C 0.304 3.696 18 O -0.430 6.430 19 C -0.087 4.087 20 H 0.120 0.880 21 C -0.183 4.183 22 C -0.011 4.011 23 O -0.231 6.231 24 C 0.093 3.907 25 C -0.172 4.172 26 C -0.105 4.105 27 C -0.167 4.167 28 C -0.096 4.096 29 C -0.146 4.146 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.248 0.752 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.084 0.916 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.298 3.316 4.185 14.330 hybrid contribution 0.398 0.536 -1.346 1.502 sum -12.901 3.852 2.839 13.760 Atomic orbital electron populations 1.22463 1.00175 0.98988 1.01435 1.20747 0.91613 0.87506 0.98713 1.43872 1.76072 1.08181 1.02311 1.19092 1.07642 1.18984 0.93459 0.91909 1.25207 0.94721 1.01216 0.97606 1.69957 1.09502 1.36779 1.37329 0.86377 0.76955 0.81312 0.82601 1.21318 1.21715 1.20443 1.20524 0.88731 0.99827 0.84026 0.87922 1.22015 1.01140 0.97811 0.99246 1.22200 0.88013 0.96240 0.96026 1.46092 1.10607 1.59091 1.19180 1.20084 0.84072 0.78432 0.87046 1.90648 1.84593 1.51215 1.16546 1.20176 0.95120 0.91894 1.01474 0.88048 1.22135 0.92596 0.99747 1.03782 1.22992 0.99559 0.81200 0.97374 1.85965 1.31431 1.29898 1.75808 1.18616 0.84419 0.90847 0.96815 1.20537 0.99520 0.90603 1.06514 1.20928 0.91827 0.99596 0.98158 1.21039 0.98079 0.94732 1.02855 1.21122 0.97658 0.94104 0.96749 1.19390 0.93165 0.94206 1.07834 0.92999 0.93484 0.94873 0.94134 0.94534 0.93500 0.95317 0.90286 0.94911 0.92922 0.92918 0.75228 0.88863 0.89417 0.87203 0.91607 0.85318 0.85471 0.85669 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.85 37.16 0.37 -2.57 16 2 C 0.14 2.75 5.65 -4.04 -0.02 2.72 16 3 N -0.58 -12.65 1.84 -165.66 -0.31 -12.96 16 4 C -0.26 -6.30 9.32 -15.06 -0.14 -6.44 16 5 H 0.06 1.52 7.86 -52.49 -0.41 1.11 16 6 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 7 N -0.89 -23.12 10.32 55.49 0.57 -22.54 16 8 Si 0.90 19.97 29.57 -169.99 -5.03 14.94 16 9 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 C 0.18 3.67 1.91 -67.93 -0.13 3.54 16 13 H 0.10 2.44 5.99 -51.93 -0.31 2.13 16 14 C -0.14 -2.88 9.04 37.16 0.34 -2.55 16 15 C 0.10 1.89 4.34 -4.04 -0.02 1.87 16 16 N -0.70 -12.23 3.21 -60.29 -0.19 -12.42 16 17 C 0.52 8.93 5.53 -10.98 -0.06 8.87 16 18 O -0.55 -11.24 16.06 5.55 0.09 -11.15 16 19 C -0.07 -0.93 2.70 -92.85 -0.25 -1.18 16 20 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 21 C -0.14 -1.78 5.35 -26.48 -0.14 -1.93 16 22 C 0.06 0.66 7.03 37.37 0.26 0.92 16 23 O -0.32 -4.15 10.27 -19.27 -0.20 -4.35 16 24 C 0.14 1.94 6.47 -39.19 -0.25 1.68 16 25 C -0.15 -1.90 9.94 -39.34 -0.39 -2.30 16 26 C -0.09 -1.01 10.04 -39.66 -0.40 -1.41 16 27 C -0.15 -1.94 10.04 -39.61 -0.40 -2.34 16 28 C -0.08 -1.16 9.10 -39.53 -0.36 -1.52 16 29 C -0.14 -2.14 5.43 -104.44 -0.57 -2.70 16 30 H 0.05 0.91 4.93 -51.93 -0.26 0.65 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.04 0.69 6.48 -51.93 -0.34 0.36 16 35 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.03 0.54 6.70 -51.93 -0.35 0.19 16 37 H 0.08 1.81 7.33 -51.93 -0.38 1.43 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 41 H 0.41 7.35 7.87 -40.82 -0.32 7.03 16 42 H 0.09 1.34 7.46 -51.93 -0.39 0.95 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 48 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 49 H 0.13 2.01 6.74 -52.49 -0.35 1.66 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -28.00 383.41 -9.22 -37.22 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.68 Total: 10.59 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.25 Total: -5.10 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.07 Total: -47.93 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.11 Total: -15.50 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.00 -9.22 -37.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155856488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.571 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds