Wall clock time and date at job start Tue Mar 31 2020 17:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47545 * 2 1 4 4 C 1.36939 * 119.99816 * 86.51163 * 3 2 1 5 5 H 1.08000 * 119.99967 * 42.00769 * 4 3 2 6 6 C 1.38817 * 119.99822 * 222.00732 * 4 3 2 7 7 N 1.31622 * 119.99990 * 30.18333 * 6 4 3 8 8 Si 1.86793 * 119.99809 * 210.18437 * 6 4 3 9 9 H 1.48506 * 109.47465 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47542 * 239.99931 * 8 6 4 11 11 H 1.48499 * 109.47193 * 119.99694 * 8 6 4 12 12 C 1.46494 * 120.00031 * 266.51400 * 3 2 1 13 13 H 1.08996 * 109.47196 * 173.07953 * 12 3 2 14 14 C 1.52999 * 109.47309 * 53.08145 * 12 3 2 15 15 C 1.52997 * 109.47199 * 293.08246 * 12 3 2 16 16 N 1.46499 * 109.47023 * 304.99882 * 15 12 3 17 17 C 1.34780 * 119.99782 * 180.02562 * 16 15 12 18 18 O 1.21276 * 120.00335 * 3.81994 * 17 16 15 19 19 C 1.50705 * 119.99478 * 183.82091 * 17 16 15 20 20 H 1.08997 * 109.43652 * 336.23320 * 19 17 16 21 21 C 1.53068 * 109.43325 * 216.36103 * 19 17 16 22 22 C 1.53418 * 108.30333 * 191.78541 * 21 19 17 23 23 O 1.42829 * 108.36052 * 64.74490 * 22 21 19 24 24 C 1.35843 * 117.84731 * 310.78898 * 23 22 21 25 25 C 1.39145 * 118.48805 * 197.07777 * 24 23 22 26 26 C 1.37966 * 120.21172 * 180.22960 * 25 24 23 27 27 C 1.38290 * 119.95750 * 0.02562 * 26 25 24 28 28 C 1.38097 * 119.98662 * 359.91032 * 27 26 25 29 29 C 1.38367 * 121.80978 * 17.17436 * 24 23 22 30 30 H 1.08996 * 109.47194 * 59.99658 * 1 2 3 31 31 H 1.08998 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47251 * 299.99958 * 1 2 3 33 33 H 1.09004 * 109.47251 * 240.00042 * 2 1 3 34 34 H 1.09009 * 109.47269 * 120.00516 * 2 1 3 35 35 H 0.96996 * 119.99873 * 5.32935 * 7 6 4 36 36 H 1.09009 * 109.47452 * 69.74066 * 14 12 3 37 37 H 1.08998 * 109.47898 * 189.74180 * 14 12 3 38 38 H 1.09000 * 109.47272 * 309.75045 * 14 12 3 39 39 H 1.08999 * 109.47290 * 65.00012 * 15 12 3 40 40 H 1.09004 * 109.47116 * 185.00293 * 15 12 3 41 41 H 0.96994 * 120.00159 * 0.02562 * 16 15 12 42 42 H 1.09004 * 109.70281 * 311.48997 * 21 19 17 43 43 H 1.09003 * 109.69631 * 72.08179 * 21 19 17 44 44 H 1.09007 * 109.67617 * 305.02920 * 22 21 19 45 45 H 1.09002 * 109.71782 * 184.49059 * 22 21 19 46 46 H 1.07999 * 119.89423 * 0.21386 * 25 24 23 47 47 H 1.08001 * 120.02182 * 180.02562 * 26 25 24 48 48 H 1.08001 * 120.00378 * 179.97438 * 27 26 25 49 49 H 1.08003 * 119.84578 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1786 2.0507 1.1838 5 1 2.6102 1.5460 2.0355 6 6 1.7863 3.3781 1.2890 7 7 0.7839 3.8276 0.5639 8 14 2.6809 4.5265 2.4595 9 1 3.7625 3.7820 3.1532 10 1 1.7224 5.0566 3.4622 11 1 3.2698 5.6540 1.6932 12 6 2.3353 2.0460 -1.2663 13 1 2.5627 3.0954 -1.0788 14 6 1.1351 1.9451 -2.2098 15 6 3.5473 1.3684 -1.9087 16 7 4.6624 1.3595 -0.9586 17 6 5.8421 0.8101 -1.3092 18 8 6.0029 0.3855 -2.4338 19 6 6.9613 0.7234 -0.3037 20 1 6.8205 1.4858 0.4624 21 6 8.2996 0.9535 -1.0102 22 6 9.4272 0.5712 -0.0427 23 8 9.3397 -0.8302 0.2188 24 6 8.1282 -1.3364 0.5669 25 6 8.0805 -2.5909 1.1670 26 6 6.8687 -3.1410 1.5306 27 6 5.6967 -2.4447 1.2981 28 6 5.7403 -1.1989 0.7040 29 6 6.9541 -0.6406 0.3385 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 0.2700 3.2153 0.0145 36 1 0.3251 2.5714 -1.8357 37 1 1.4254 2.2826 -3.2047 38 1 0.7993 0.9094 -2.2610 39 1 3.2907 0.3437 -2.1774 40 1 3.8378 1.9171 -2.8047 41 1 4.5517 1.7490 -0.0772 42 1 8.3553 0.3314 -1.9035 43 1 8.3931 2.0037 -1.2869 44 1 9.3155 1.1263 0.8888 45 1 10.3925 0.8012 -0.4937 46 1 8.9951 -3.1358 1.3484 47 1 6.8353 -4.1147 1.9966 48 1 4.7476 -2.8748 1.5821 49 1 4.8236 -0.6569 0.5238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155856489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:52 Heat of formation + Delta-G solvation = -42.679476 kcal Electronic energy + Delta-G solvation = -30256.398274 eV Core-core repulsion = 26376.664303 eV Total energy + Delta-G solvation = -3879.733971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00532 -39.08949 -37.48819 -37.19423 -34.17022 -33.90056 -31.95658 -31.05465 -30.60724 -30.18471 -28.41310 -26.99677 -25.06534 -23.75111 -23.58117 -22.53523 -21.81309 -20.58034 -19.74206 -19.36939 -17.95695 -17.39454 -16.73140 -16.69003 -16.07042 -15.61478 -15.16871 -14.95764 -14.49288 -14.14490 -13.99857 -13.85099 -13.71560 -13.65246 -13.25814 -13.15488 -12.93589 -12.63611 -12.45058 -12.03671 -11.92571 -11.90243 -11.67536 -11.57134 -11.49202 -11.05067 -10.95461 -10.91747 -10.79583 -10.63377 -10.56602 -10.25137 -10.05068 -9.85092 -9.56603 -9.43625 -8.74906 -8.52283 -8.37670 -8.15073 -6.90737 -6.18572 -3.50167 1.29889 1.45944 2.92184 3.20999 3.40669 3.41837 3.54668 3.55481 3.86551 4.45862 4.48937 4.61367 4.67559 4.90272 5.05961 5.06851 5.09881 5.22708 5.24850 5.31130 5.39747 5.46512 5.53038 5.54084 5.65384 5.81833 5.89845 5.98808 6.00710 6.05723 6.11965 6.20180 6.26939 6.29546 6.30806 6.39012 6.44986 6.47774 6.58313 6.59357 6.78073 6.82956 6.88554 7.01392 7.05547 7.17721 7.39706 8.03978 8.10507 8.51216 8.62765 9.06150 9.70433 10.23146 11.02781 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.004114 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.150599 B = 6803.677406 C = 7076.861680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 N -0.584 5.584 4 C -0.372 4.372 5 H 0.050 0.950 6 C -0.004 4.004 7 N -0.893 5.893 8 Si 1.054 2.946 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.289 1.289 12 C 0.163 3.837 13 H 0.083 0.917 14 C -0.159 4.159 15 C 0.106 3.894 16 N -0.701 5.701 17 C 0.519 3.481 18 O -0.552 6.552 19 C -0.065 4.065 20 H 0.101 0.899 21 C -0.146 4.146 22 C 0.064 3.936 23 O -0.317 6.317 24 C 0.138 3.862 25 C -0.154 4.154 26 C -0.087 4.087 27 C -0.149 4.149 28 C -0.075 4.075 29 C -0.145 4.145 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.275 0.725 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.414 0.586 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.125 0.875 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 -7.508 -0.134 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.017 3.983 3 N -0.307 5.307 4 C -0.501 4.501 5 H 0.068 0.932 6 C -0.211 4.211 7 N -0.529 5.529 8 Si 0.883 3.117 9 H -0.215 1.215 10 H -0.220 1.220 11 H -0.216 1.216 12 C 0.056 3.944 13 H 0.101 0.899 14 C -0.218 4.218 15 C -0.020 4.020 16 N -0.352 5.352 17 C 0.304 3.696 18 O -0.431 6.431 19 C -0.086 4.086 20 H 0.119 0.881 21 C -0.184 4.184 22 C -0.011 4.011 23 O -0.231 6.231 24 C 0.093 3.907 25 C -0.173 4.173 26 C -0.105 4.105 27 C -0.167 4.167 28 C -0.093 4.093 29 C -0.146 4.146 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.251 0.749 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.128 0.872 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.561 -6.324 -0.410 14.069 hybrid contribution -0.646 -1.133 -0.063 1.306 sum 11.915 -7.457 -0.473 14.063 Atomic orbital electron populations 1.22436 0.99814 0.98647 1.01936 1.20827 0.91747 0.87831 0.97888 1.43942 1.74651 1.10297 1.01802 1.19743 1.41752 0.97108 0.91454 0.93222 1.25928 0.95727 0.98312 1.01164 1.70728 1.13757 1.40267 1.28143 0.83730 0.75966 0.75964 0.76022 1.21499 1.22012 1.21583 1.20646 0.90133 0.97359 0.86308 0.89935 1.22284 0.99878 1.01413 0.98274 1.22026 0.87594 1.00848 0.91527 1.46044 1.10978 1.58689 1.19499 1.20122 0.83481 0.77888 0.88131 1.90643 1.82176 1.48877 1.21378 1.20142 0.95231 0.95853 0.97360 0.88093 1.22154 0.92566 1.03947 0.99710 1.22987 0.99921 0.79345 0.98869 1.85962 1.28325 1.25159 1.83685 1.18612 0.83667 0.93441 0.95006 1.20520 0.98909 0.94885 1.02994 1.20930 0.91694 0.99432 0.98422 1.21033 0.98490 0.95370 1.01799 1.21191 0.97179 0.95408 0.95502 1.19347 0.93296 0.96950 1.05048 0.93295 0.95149 0.92833 0.94936 0.94289 0.91347 0.91720 0.93939 0.93044 0.92793 0.92750 0.74855 0.88866 0.89424 0.91588 0.87209 0.85359 0.85518 0.85741 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.93 37.15 0.37 -2.82 16 2 C 0.14 2.78 5.54 -4.04 -0.02 2.76 16 3 N -0.58 -12.40 1.61 -165.67 -0.27 -12.67 16 4 C -0.37 -8.94 8.55 -15.06 -0.13 -9.07 16 5 H 0.05 1.25 7.99 -52.49 -0.42 0.83 16 6 C 0.00 -0.11 4.46 -17.43 -0.08 -0.19 16 7 N -0.89 -24.11 12.92 55.49 0.72 -23.39 16 8 Si 1.05 22.93 30.01 -169.99 -5.10 17.83 16 9 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.16 3.26 1.98 -67.94 -0.13 3.13 16 13 H 0.08 1.89 6.80 -51.93 -0.35 1.53 16 14 C -0.16 -2.95 8.21 37.16 0.31 -2.65 16 15 C 0.11 1.94 5.05 -4.04 -0.02 1.92 16 16 N -0.70 -12.31 4.71 -60.29 -0.28 -12.60 16 17 C 0.52 8.96 5.77 -10.98 -0.06 8.90 16 18 O -0.55 -11.22 16.08 5.56 0.09 -11.13 16 19 C -0.06 -0.93 2.71 -92.85 -0.25 -1.18 16 20 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 21 C -0.15 -1.78 5.36 -26.48 -0.14 -1.92 16 22 C 0.06 0.66 7.03 37.37 0.26 0.92 16 23 O -0.32 -4.18 10.27 -19.25 -0.20 -4.38 16 24 C 0.14 1.96 6.47 -39.20 -0.25 1.70 16 25 C -0.15 -1.95 9.94 -39.34 -0.39 -2.34 16 26 C -0.09 -1.03 10.04 -39.66 -0.40 -1.43 16 27 C -0.15 -2.00 10.04 -39.61 -0.40 -2.39 16 28 C -0.07 -1.15 9.10 -39.53 -0.36 -1.51 16 29 C -0.15 -2.18 5.43 -104.44 -0.57 -2.74 16 30 H 0.05 0.92 5.78 -51.93 -0.30 0.62 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.03 0.60 6.71 -51.93 -0.35 0.25 16 34 H 0.04 0.77 8.07 -51.92 -0.42 0.35 16 35 H 0.27 7.45 6.29 -40.82 -0.26 7.19 16 36 H 0.06 1.32 6.61 -51.92 -0.34 0.98 16 37 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.05 0.91 5.69 -51.93 -0.30 0.61 16 39 H 0.05 1.02 7.14 -51.93 -0.37 0.65 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.41 7.46 7.46 -40.82 -0.30 7.16 16 42 H 0.09 1.33 7.47 -51.93 -0.39 0.94 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 49 H 0.13 2.21 6.83 -52.48 -0.36 1.85 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -28.65 384.58 -9.12 -37.76 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.60 Total: 11.68 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.27 Total: -8.91 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.17 Total: -48.66 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.11 Total: -15.51 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.10 Total: 17.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.65 -9.12 -37.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155856489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.916 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds