Wall clock time and date at job start Tue Mar 31 2020 17:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47545 * 2 1 4 4 C 1.36939 * 119.99816 * 86.51163 * 3 2 1 5 5 H 1.08000 * 119.99967 * 42.00769 * 4 3 2 6 6 C 1.38817 * 119.99822 * 222.00732 * 4 3 2 7 7 N 1.31622 * 119.99990 * 30.18333 * 6 4 3 8 8 Si 1.86793 * 119.99809 * 210.18437 * 6 4 3 9 9 H 1.48506 * 109.47465 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47542 * 239.99931 * 8 6 4 11 11 H 1.48499 * 109.47193 * 119.99694 * 8 6 4 12 12 C 1.46494 * 120.00031 * 266.51400 * 3 2 1 13 13 H 1.08996 * 109.47196 * 173.07953 * 12 3 2 14 14 C 1.52999 * 109.47309 * 53.08145 * 12 3 2 15 15 C 1.52997 * 109.47199 * 293.08246 * 12 3 2 16 16 N 1.46499 * 109.47023 * 304.99882 * 15 12 3 17 17 C 1.34780 * 119.99782 * 180.02562 * 16 15 12 18 18 O 1.21276 * 120.00335 * 3.81994 * 17 16 15 19 19 C 1.50705 * 119.99478 * 183.82091 * 17 16 15 20 20 H 1.08997 * 109.43652 * 336.23320 * 19 17 16 21 21 C 1.53068 * 109.43325 * 216.36103 * 19 17 16 22 22 C 1.53418 * 108.30333 * 191.78541 * 21 19 17 23 23 O 1.42829 * 108.36052 * 64.74490 * 22 21 19 24 24 C 1.35843 * 117.84731 * 310.78898 * 23 22 21 25 25 C 1.39145 * 118.48805 * 197.07777 * 24 23 22 26 26 C 1.37966 * 120.21172 * 180.22960 * 25 24 23 27 27 C 1.38290 * 119.95750 * 0.02562 * 26 25 24 28 28 C 1.38097 * 119.98662 * 359.91032 * 27 26 25 29 29 C 1.38367 * 121.80978 * 17.17436 * 24 23 22 30 30 H 1.08996 * 109.47194 * 59.99658 * 1 2 3 31 31 H 1.08998 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47251 * 299.99958 * 1 2 3 33 33 H 1.09004 * 109.47251 * 240.00042 * 2 1 3 34 34 H 1.09009 * 109.47269 * 120.00516 * 2 1 3 35 35 H 0.96996 * 119.99873 * 5.32935 * 7 6 4 36 36 H 1.09009 * 109.47452 * 69.74066 * 14 12 3 37 37 H 1.08998 * 109.47898 * 189.74180 * 14 12 3 38 38 H 1.09000 * 109.47272 * 309.75045 * 14 12 3 39 39 H 1.08999 * 109.47290 * 65.00012 * 15 12 3 40 40 H 1.09004 * 109.47116 * 185.00293 * 15 12 3 41 41 H 0.96994 * 120.00159 * 0.02562 * 16 15 12 42 42 H 1.09004 * 109.70281 * 311.48997 * 21 19 17 43 43 H 1.09003 * 109.69631 * 72.08179 * 21 19 17 44 44 H 1.09007 * 109.67617 * 305.02920 * 22 21 19 45 45 H 1.09002 * 109.71782 * 184.49059 * 22 21 19 46 46 H 1.07999 * 119.89423 * 0.21386 * 25 24 23 47 47 H 1.08001 * 120.02182 * 180.02562 * 26 25 24 48 48 H 1.08001 * 120.00378 * 179.97438 * 27 26 25 49 49 H 1.08003 * 119.84578 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1786 2.0507 1.1838 5 1 2.6102 1.5460 2.0355 6 6 1.7863 3.3781 1.2890 7 7 0.7839 3.8276 0.5639 8 14 2.6809 4.5265 2.4595 9 1 3.7625 3.7820 3.1532 10 1 1.7224 5.0566 3.4622 11 1 3.2698 5.6540 1.6932 12 6 2.3353 2.0460 -1.2663 13 1 2.5627 3.0954 -1.0788 14 6 1.1351 1.9451 -2.2098 15 6 3.5473 1.3684 -1.9087 16 7 4.6624 1.3595 -0.9586 17 6 5.8421 0.8101 -1.3092 18 8 6.0029 0.3855 -2.4338 19 6 6.9613 0.7234 -0.3037 20 1 6.8205 1.4858 0.4624 21 6 8.2996 0.9535 -1.0102 22 6 9.4272 0.5712 -0.0427 23 8 9.3397 -0.8302 0.2188 24 6 8.1282 -1.3364 0.5669 25 6 8.0805 -2.5909 1.1670 26 6 6.8687 -3.1410 1.5306 27 6 5.6967 -2.4447 1.2981 28 6 5.7403 -1.1989 0.7040 29 6 6.9541 -0.6406 0.3385 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 0.2700 3.2153 0.0145 36 1 0.3251 2.5714 -1.8357 37 1 1.4254 2.2826 -3.2047 38 1 0.7993 0.9094 -2.2610 39 1 3.2907 0.3437 -2.1774 40 1 3.8378 1.9171 -2.8047 41 1 4.5517 1.7490 -0.0772 42 1 8.3553 0.3314 -1.9035 43 1 8.3931 2.0037 -1.2869 44 1 9.3155 1.1263 0.8888 45 1 10.3925 0.8012 -0.4937 46 1 8.9951 -3.1358 1.3484 47 1 6.8353 -4.1147 1.9966 48 1 4.7476 -2.8748 1.5821 49 1 4.8236 -0.6569 0.5238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155856489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:51 Heat of formation + Delta-G solvation = -57.589967 kcal Electronic energy + Delta-G solvation = -30257.044842 eV Core-core repulsion = 26376.664303 eV Total energy + Delta-G solvation = -3880.380538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.08396 -40.43376 -38.83851 -38.45493 -35.46100 -35.27825 -33.79079 -32.56895 -31.61038 -31.20074 -30.15266 -28.23236 -26.34929 -25.47330 -24.69611 -23.60839 -23.43741 -21.77753 -21.30984 -20.67073 -19.24210 -18.89248 -17.99578 -17.73906 -17.15516 -17.00034 -16.81942 -15.95291 -15.82074 -15.74902 -15.41842 -15.32722 -15.06367 -14.77053 -14.49410 -14.37404 -14.24375 -14.13569 -13.71383 -13.54696 -13.41753 -13.18811 -13.14754 -12.92064 -12.64850 -12.56925 -12.49257 -12.20113 -12.07703 -11.92320 -11.84640 -11.77726 -11.64023 -11.48079 -11.22574 -10.90432 -10.30996 -10.01168 -9.80821 -9.16624 -8.76499 -8.11176 -5.43999 0.27237 0.42252 1.55691 1.63301 1.65978 1.82948 2.19513 2.37423 2.67371 2.78556 3.22604 3.43558 3.53589 3.59051 3.69066 3.85116 4.03792 4.09967 4.15091 4.18633 4.29331 4.36378 4.37916 4.49223 4.50026 4.52479 4.54861 4.63840 4.66163 4.72443 4.75270 4.80319 4.88846 4.91031 5.00328 5.03409 5.06147 5.22469 5.28940 5.31999 5.34543 5.43785 5.54662 5.56813 5.56926 5.81112 6.13173 6.42625 6.54105 6.60531 7.19631 7.24552 7.84139 8.36412 9.05236 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.004114 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.150599 B = 6803.677406 C = 7076.861680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 N -0.590 5.590 4 C -0.359 4.359 5 H 0.039 0.961 6 C -0.046 4.046 7 N -0.923 5.923 8 Si 1.095 2.905 9 H -0.269 1.269 10 H -0.300 1.300 11 H -0.289 1.289 12 C 0.171 3.829 13 H 0.053 0.947 14 C -0.151 4.151 15 C 0.117 3.883 16 N -0.700 5.700 17 C 0.522 3.478 18 O -0.585 6.585 19 C -0.063 4.063 20 H 0.113 0.887 21 C -0.142 4.142 22 C 0.063 3.937 23 O -0.325 6.325 24 C 0.127 3.873 25 C -0.158 4.158 26 C -0.079 4.079 27 C -0.158 4.158 28 C -0.097 4.097 29 C -0.163 4.163 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.412 0.588 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.141 0.859 46 H 0.151 0.849 47 H 0.161 0.839 48 H 0.136 0.864 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -8.680 0.433 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 N -0.313 5.313 4 C -0.489 4.489 5 H 0.057 0.943 6 C -0.248 4.248 7 N -0.562 5.562 8 Si 0.921 3.079 9 H -0.194 1.194 10 H -0.228 1.228 11 H -0.216 1.216 12 C 0.063 3.937 13 H 0.071 0.929 14 C -0.210 4.210 15 C -0.009 4.009 16 N -0.350 5.350 17 C 0.309 3.691 18 O -0.466 6.466 19 C -0.084 4.084 20 H 0.131 0.869 21 C -0.180 4.180 22 C -0.011 4.011 23 O -0.239 6.239 24 C 0.081 3.919 25 C -0.176 4.176 26 C -0.097 4.097 27 C -0.176 4.176 28 C -0.116 4.116 29 C -0.164 4.164 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.159 0.841 46 H 0.169 0.831 47 H 0.179 0.821 48 H 0.154 0.846 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.508 -7.512 0.160 16.338 hybrid contribution -1.241 -0.866 -0.253 1.534 sum 13.267 -8.378 -0.093 15.691 Atomic orbital electron populations 1.22305 0.99112 1.00010 1.00325 1.20856 0.92183 0.86796 0.98338 1.44003 1.75004 1.10738 1.01558 1.19780 1.40019 0.97118 0.92013 0.94341 1.26905 0.95835 0.99956 1.02086 1.70830 1.15256 1.40114 1.29966 0.83163 0.75448 0.74756 0.74511 1.19391 1.22782 1.21578 1.20519 0.91363 0.95639 0.86155 0.92903 1.22168 0.98441 1.01541 0.98818 1.21808 0.87207 1.00291 0.91602 1.46045 1.11102 1.58760 1.19123 1.20620 0.83730 0.76611 0.88177 1.90620 1.82766 1.50213 1.22961 1.20192 0.94971 0.96331 0.96896 0.86919 1.22156 0.92137 1.04652 0.99075 1.23255 1.00498 0.78154 0.99222 1.85952 1.27735 1.26673 1.83580 1.18841 0.83706 0.94072 0.95248 1.20907 1.00161 0.94415 1.02106 1.21302 0.90703 1.00389 0.97267 1.21264 0.99861 0.94894 1.01590 1.21162 0.96635 0.96516 0.97246 1.19431 0.93687 0.97382 1.05898 0.93515 0.92253 0.95731 0.93598 0.94658 0.92524 0.93975 0.91832 0.92112 0.93114 0.92381 0.75104 0.91182 0.87609 0.90110 0.84096 0.83115 0.82141 0.84648 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 9.93 71.98 0.71 -5.18 16 2 C 0.14 5.55 5.54 86.38 0.48 6.03 16 3 N -0.59 -25.31 1.61 -678.04 -1.09 -26.40 16 4 C -0.36 -17.50 8.55 84.03 0.72 -16.79 16 5 H 0.04 1.96 7.99 -2.91 -0.02 1.94 16 6 C -0.05 -2.35 4.46 84.86 0.38 -1.97 16 7 N -0.92 -51.00 12.92 21.65 0.28 -50.72 16 8 Si 1.09 46.60 30.01 68.60 2.06 48.66 16 9 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.30 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 C 0.17 6.89 1.98 44.99 0.09 6.98 16 13 H 0.05 2.47 6.80 -2.39 -0.02 2.46 16 14 C -0.15 -5.57 8.21 71.98 0.59 -4.98 16 15 C 0.12 4.30 5.05 86.38 0.44 4.73 16 16 N -0.70 -24.76 4.71 -463.06 -2.18 -26.95 16 17 C 0.52 18.07 5.77 87.66 0.51 18.57 16 18 O -0.58 -23.93 16.08 -3.02 -0.05 -23.98 16 19 C -0.06 -1.76 2.71 -12.24 -0.03 -1.80 16 20 H 0.11 2.82 8.08 -2.39 -0.02 2.80 16 21 C -0.14 -3.28 5.36 30.76 0.16 -3.12 16 22 C 0.06 1.14 7.03 72.12 0.51 1.65 16 23 O -0.33 -7.88 10.27 -91.79 -0.94 -8.82 16 24 C 0.13 3.40 6.47 22.52 0.15 3.54 16 25 C -0.16 -3.60 9.94 22.42 0.22 -3.38 16 26 C -0.08 -1.68 10.04 22.22 0.22 -1.45 16 27 C -0.16 -4.05 10.04 22.25 0.22 -3.83 16 28 C -0.10 -2.97 9.10 22.30 0.20 -2.77 16 29 C -0.16 -4.78 5.43 -19.75 -0.11 -4.89 16 30 H 0.05 1.74 5.78 -2.39 -0.01 1.73 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.05 1.66 6.71 -2.38 -0.02 1.64 16 34 H 0.04 1.39 8.07 -2.38 -0.02 1.37 16 35 H 0.26 14.75 6.29 -92.71 -0.58 14.17 16 36 H 0.04 1.75 6.61 -2.38 -0.02 1.73 16 37 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 38 H 0.06 2.11 5.69 -2.39 -0.01 2.09 16 39 H 0.05 1.90 7.14 -2.39 -0.02 1.88 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.08 16 41 H 0.41 15.01 7.46 -92.71 -0.69 14.32 16 42 H 0.07 1.96 7.47 -2.38 -0.02 1.94 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 47 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 48 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 49 H 0.11 3.82 6.83 -2.91 -0.02 3.80 16 Total: -1.00 -62.93 384.58 3.99 -58.94 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.45 Total: 37.92 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.46 Total: -8.64 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -2.99 Total: -104.07 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.99 Total: -32.80 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.06 Total: 48.66 kcal Total: -62.93 3.99 -58.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155856489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.350 kcal (2) G-P(sol) polarization free energy of solvation -62.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds