Wall clock time and date at job start Tue Mar 31 2020 17:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35509 * 117.00327 * 2 1 4 4 C 1.39436 * 120.46750 * 179.97438 * 3 2 1 5 5 C 1.38190 * 118.50781 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.36913 * 180.02562 * 5 4 3 7 7 N 1.32462 * 119.26873 * 0.02562 * 5 4 3 8 8 C 1.32460 * 120.88870 * 359.97438 * 7 5 4 9 9 N 1.38396 * 119.18935 * 179.97438 * 8 7 5 10 10 C 1.46956 * 111.00189 * 180.02562 * 9 8 7 11 11 C 1.53050 * 109.36857 * 183.18967 * 10 9 8 12 12 N 1.46955 * 109.36180 * 301.59962 * 11 10 9 13 13 C 1.46907 * 110.99881 * 183.18253 * 12 11 10 14 14 C 1.53002 * 109.47115 * 164.19980 * 13 12 11 15 15 C 1.50704 * 115.54672 * 305.34339 * 14 13 12 16 16 H 1.08001 * 120.00171 * 116.99178 * 15 14 13 17 17 C 1.37876 * 120.00390 * 296.98335 * 15 14 13 18 18 N 1.31514 * 120.00097 * 174.39205 * 17 15 14 19 19 Si 1.86807 * 119.99683 * 354.66652 * 17 15 14 20 20 H 1.48494 * 109.46921 * 94.02984 * 19 17 15 21 21 H 1.48504 * 109.46900 * 214.03371 * 19 17 15 22 22 H 1.48503 * 109.47152 * 334.02976 * 19 17 15 23 23 C 1.52992 * 117.49946 * 91.01038 * 14 13 12 24 24 C 1.52990 * 117.50107 * 159.67385 * 14 13 12 25 25 C 1.46952 * 110.88277 * 59.32022 * 12 11 10 26 26 C 1.46960 * 111.00290 * 303.80209 * 9 8 7 27 27 N 1.32489 * 121.62633 * 0.27981 * 8 7 5 28 28 H 1.09001 * 109.46334 * 60.00025 * 1 2 3 29 29 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46631 * 300.00230 * 1 2 3 31 31 H 1.07999 * 120.74419 * 0.04096 * 4 3 2 32 32 H 1.08998 * 109.47380 * 269.98456 * 6 5 4 33 33 H 1.09008 * 109.46647 * 29.98268 * 6 5 4 34 34 H 1.09002 * 109.47097 * 149.97539 * 6 5 4 35 35 H 1.09001 * 109.49014 * 63.22267 * 10 9 8 36 36 H 1.09003 * 109.50680 * 303.16830 * 10 9 8 37 37 H 1.08996 * 109.49554 * 181.63115 * 11 10 9 38 38 H 1.09009 * 109.50647 * 61.57339 * 11 10 9 39 39 H 1.09004 * 109.46587 * 44.20492 * 13 12 11 40 40 H 1.08995 * 109.47299 * 284.19896 * 13 12 11 41 41 H 0.97008 * 119.99607 * 180.02562 * 18 17 15 42 42 H 1.09002 * 117.50498 * 215.00380 * 23 14 13 43 43 H 1.08998 * 117.49907 * 0.02562 * 23 14 13 44 44 H 1.09009 * 117.49995 * 359.97438 * 24 14 13 45 45 H 1.08998 * 117.50308 * 144.97146 * 24 14 13 46 46 H 1.09001 * 109.49139 * 60.64346 * 25 12 11 47 47 H 1.09005 * 109.49143 * 180.71432 * 25 12 11 48 48 H 1.09000 * 109.48445 * 296.77967 * 26 9 8 49 49 H 1.08996 * 109.48598 * 56.83891 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2074 0.0000 4 6 3.4362 1.2916 0.0005 5 6 4.0211 2.5436 0.0011 6 6 5.5217 2.6835 0.0011 7 7 3.2484 3.6195 0.0016 8 6 1.9284 3.5087 0.0010 9 7 1.1548 4.6562 0.0021 10 6 -0.2772 4.3259 0.0019 11 6 -1.0958 5.6167 -0.0772 12 7 -0.7572 6.4790 1.0636 13 6 -1.5784 7.6971 1.0647 14 6 -1.4939 8.3680 2.4372 15 6 -1.8508 7.4932 3.6113 16 1 -1.1082 7.2678 4.3623 17 6 -3.1256 6.9808 3.7269 18 7 -3.4076 6.1299 4.6892 19 14 -4.4503 7.4894 2.5119 20 1 -4.5131 6.5009 1.4056 21 1 -5.7631 7.5418 3.2041 22 1 -4.1278 8.8299 1.9603 23 6 -0.3995 9.4168 2.6446 24 6 -1.8624 9.8504 2.5228 25 6 0.6747 6.8093 1.0638 26 6 1.4928 5.5183 1.1433 27 7 1.3305 2.3264 0.0055 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8899 31 1 4.0433 0.3985 0.0003 32 1 5.8835 2.7170 1.0287 33 1 5.9660 1.8310 -0.5129 34 1 5.8008 3.6034 -0.5128 35 1 -0.5275 3.7923 0.9188 36 1 -0.5056 3.6971 -0.8587 37 1 -2.1584 5.3759 -0.0483 38 1 -0.8660 6.1370 -1.0071 39 1 -2.6151 7.4366 0.8509 40 1 -1.2114 8.3834 0.3016 41 1 -4.3044 5.7691 4.7702 42 1 0.0624 9.4742 3.6303 43 1 0.2600 9.6292 1.8032 44 1 -2.1648 10.3479 1.6013 45 1 -2.3635 10.1930 3.4282 46 1 0.9249 7.3430 0.1469 47 1 0.9028 7.4379 1.9247 48 1 1.2624 4.9979 2.0729 49 1 2.5555 5.7591 1.1147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602775217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:07 Heat of formation + Delta-G solvation = 74.814514 kcal Electronic energy + Delta-G solvation = -29566.214755 eV Core-core repulsion = 25723.868457 eV Total energy + Delta-G solvation = -3842.346298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46019 -39.34855 -38.45531 -37.02834 -34.87774 -33.59502 -31.98064 -31.55292 -30.71601 -28.99336 -28.03472 -26.95421 -25.65269 -24.04859 -23.71328 -22.62338 -22.00778 -21.40475 -19.60021 -18.89309 -18.47880 -17.83599 -16.60748 -16.38275 -16.12096 -15.48986 -15.18078 -14.97427 -14.88376 -14.54765 -14.38603 -14.18667 -14.02763 -13.79648 -13.45924 -13.25237 -12.91292 -12.70674 -12.55677 -12.21959 -12.17187 -12.07779 -11.72147 -11.46478 -11.13420 -11.02381 -10.90923 -10.85888 -10.75713 -10.56283 -10.25224 -10.18375 -10.02890 -9.65284 -9.41977 -9.31209 -8.96778 -8.54602 -8.33261 -8.32022 -7.57218 -5.97372 -3.93388 0.90798 1.12887 2.74518 3.16282 3.31437 3.42893 3.47762 3.67122 3.94273 4.35062 4.51956 4.56532 4.68090 4.98723 5.03672 5.05112 5.10142 5.15717 5.21401 5.29251 5.32340 5.38257 5.41229 5.43592 5.55576 5.57094 5.63216 5.67864 5.80578 5.89356 5.94738 6.03455 6.06577 6.16292 6.17940 6.23813 6.27207 6.37980 6.49691 6.57515 6.66578 6.76677 6.78306 6.86001 7.08501 7.16515 7.29195 7.65346 7.75853 7.91933 8.14199 8.63683 9.05229 9.67640 11.15631 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015151 B = 0.003446 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.667279 B = 8124.002874 C = 9158.693885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.303 6.303 3 C 0.387 3.613 4 C -0.285 4.285 5 C 0.223 3.777 6 C -0.103 4.103 7 N -0.552 5.552 8 C 0.542 3.458 9 N -0.459 5.459 10 C 0.076 3.924 11 C 0.053 3.947 12 N -0.508 5.508 13 C 0.095 3.905 14 C 0.010 3.990 15 C -0.453 4.453 16 H 0.073 0.927 17 C 0.082 3.918 18 N -0.902 5.902 19 Si 0.868 3.132 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.254 1.254 23 C -0.188 4.188 24 C -0.197 4.197 25 C 0.063 3.937 26 C 0.073 3.927 27 N -0.607 5.607 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.261 0.739 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.032 0.968 47 H 0.098 0.902 48 H 0.059 0.941 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.675 -8.600 -11.852 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.207 6.207 3 C 0.199 3.801 4 C -0.310 4.310 5 C 0.078 3.922 6 C -0.160 4.160 7 N -0.276 5.276 8 C 0.187 3.813 9 N -0.179 5.179 10 C -0.051 4.051 11 C -0.076 4.076 12 N -0.232 5.232 13 C -0.032 4.032 14 C 0.009 3.991 15 C -0.491 4.491 16 H 0.091 0.909 17 C -0.119 4.119 18 N -0.540 5.540 19 Si 0.696 3.304 20 H -0.209 1.209 21 H -0.224 1.224 22 H -0.178 1.178 23 C -0.225 4.225 24 C -0.235 4.235 25 C -0.065 4.065 26 C -0.052 4.052 27 N -0.344 5.344 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.050 0.950 47 H 0.116 0.884 48 H 0.077 0.923 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.002 -8.160 -11.748 18.672 hybrid contribution -0.785 -0.497 -0.887 1.285 sum 11.216 -8.656 -12.635 18.984 Atomic orbital electron populations 1.22967 0.76461 1.03253 1.03126 1.86220 1.23568 1.24126 1.86785 1.19903 0.89288 0.84417 0.86454 1.21483 0.92491 1.00333 1.16702 1.21329 0.97029 0.86823 0.87068 1.20758 0.87335 1.04061 1.03831 1.67907 1.04272 1.33316 1.22117 1.20711 0.86850 0.86875 0.86900 1.58686 1.06285 1.11113 1.41800 1.22108 0.82875 0.97085 1.02992 1.22239 0.99575 0.93371 0.92413 1.61914 1.03299 1.17682 1.40305 1.21793 0.96064 0.89166 0.96226 1.19383 0.98333 0.87277 0.94119 1.20068 0.96842 1.27431 1.04710 0.90919 1.24796 0.98221 0.94013 0.94897 1.69905 1.20657 1.30316 1.33164 0.87045 0.81393 0.80198 0.81721 1.20930 1.22372 1.17818 1.22825 0.91196 1.07729 1.00771 1.23068 0.97685 1.01868 1.00881 1.22187 0.87925 0.95007 1.01421 1.22337 1.00724 0.93113 0.89075 1.68020 1.41411 0.98556 1.26371 0.92016 0.88316 0.91637 0.83437 0.89455 0.90069 0.89715 0.91529 0.89881 0.89970 0.94915 0.92013 0.96737 0.92963 0.89834 0.91315 0.91647 0.89576 0.94981 0.88394 0.92294 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.41 101.05 1.05 1.42 16 2 O -0.30 -3.74 10.49 -18.22 -0.19 -3.93 16 3 C 0.39 5.31 7.53 -16.72 -0.13 5.19 16 4 C -0.29 -3.32 9.79 -39.15 -0.38 -3.71 16 5 C 0.22 2.64 6.81 -82.34 -0.56 2.08 16 6 C -0.10 -0.77 10.21 36.01 0.37 -0.40 16 7 N -0.55 -8.15 9.65 -10.23 -0.10 -8.25 16 8 C 0.54 8.66 7.17 -322.87 -2.32 6.34 16 9 N -0.46 -7.45 4.77 -175.25 -0.84 -8.29 16 10 C 0.08 1.24 4.76 -3.77 -0.02 1.22 16 11 C 0.05 0.90 5.58 -3.77 -0.02 0.88 16 12 N -0.51 -9.96 4.35 -234.46 -1.02 -10.98 16 13 C 0.09 1.96 4.44 -3.82 -0.02 1.94 16 14 C 0.01 0.23 0.60 -155.67 -0.09 0.14 16 15 C -0.45 -12.30 9.09 -34.44 -0.31 -12.62 16 16 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 19 Si 0.87 21.30 24.79 -169.99 -4.21 17.09 16 20 H -0.28 -6.81 7.07 56.52 0.40 -6.41 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.25 -5.87 5.88 56.52 0.33 -5.54 16 23 C -0.19 -3.69 8.37 -26.70 -0.22 -3.91 16 24 C -0.20 -4.08 8.34 -26.70 -0.22 -4.30 16 25 C 0.06 1.09 5.36 -3.77 -0.02 1.07 16 26 C 0.07 1.19 5.46 -3.76 -0.02 1.17 16 27 N -0.61 -9.32 7.63 -13.99 -0.11 -9.43 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.42 8.09 -51.92 -0.42 0.00 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 36 H 0.08 1.24 7.81 -51.93 -0.41 0.84 16 37 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 38 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.06 1.34 4.60 -51.93 -0.24 1.10 16 40 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 44 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 45 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.10 1.76 6.11 -51.93 -0.32 1.44 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.09 1.41 7.64 -51.93 -0.40 1.01 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -31.61 385.43 -11.04 -42.65 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.15 Total: 3.17 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -3.01 Total: -1.27 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -1.29 Total: -63.51 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.19 Total: -3.93 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.21 Total: 17.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.61 -11.04 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602775217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.466 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds