Wall clock time and date at job start Tue Mar 31 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35509 * 117.00327 * 2 1 4 4 C 1.39436 * 120.46750 * 179.97438 * 3 2 1 5 5 C 1.38190 * 118.50781 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.36913 * 180.02562 * 5 4 3 7 7 N 1.32462 * 119.26873 * 0.02562 * 5 4 3 8 8 C 1.32460 * 120.88870 * 359.97438 * 7 5 4 9 9 N 1.38396 * 119.18935 * 179.97438 * 8 7 5 10 10 C 1.46956 * 111.00189 * 180.02562 * 9 8 7 11 11 C 1.53050 * 109.36857 * 183.18967 * 10 9 8 12 12 N 1.46955 * 109.36180 * 301.59962 * 11 10 9 13 13 C 1.46907 * 110.99881 * 183.18253 * 12 11 10 14 14 C 1.53002 * 109.47115 * 164.19980 * 13 12 11 15 15 C 1.50704 * 115.54672 * 305.34339 * 14 13 12 16 16 H 1.08001 * 120.00171 * 116.99178 * 15 14 13 17 17 C 1.37876 * 120.00390 * 296.98335 * 15 14 13 18 18 N 1.31514 * 120.00097 * 174.39205 * 17 15 14 19 19 Si 1.86807 * 119.99683 * 354.66652 * 17 15 14 20 20 H 1.48494 * 109.46921 * 94.02984 * 19 17 15 21 21 H 1.48504 * 109.46900 * 214.03371 * 19 17 15 22 22 H 1.48503 * 109.47152 * 334.02976 * 19 17 15 23 23 C 1.52992 * 117.49946 * 91.01038 * 14 13 12 24 24 C 1.52990 * 117.50107 * 159.67385 * 14 13 12 25 25 C 1.46952 * 110.88277 * 59.32022 * 12 11 10 26 26 C 1.46960 * 111.00290 * 303.80209 * 9 8 7 27 27 N 1.32489 * 121.62633 * 0.27981 * 8 7 5 28 28 H 1.09001 * 109.46334 * 60.00025 * 1 2 3 29 29 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46631 * 300.00230 * 1 2 3 31 31 H 1.07999 * 120.74419 * 0.04096 * 4 3 2 32 32 H 1.08998 * 109.47380 * 269.98456 * 6 5 4 33 33 H 1.09008 * 109.46647 * 29.98268 * 6 5 4 34 34 H 1.09002 * 109.47097 * 149.97539 * 6 5 4 35 35 H 1.09001 * 109.49014 * 63.22267 * 10 9 8 36 36 H 1.09003 * 109.50680 * 303.16830 * 10 9 8 37 37 H 1.08996 * 109.49554 * 181.63115 * 11 10 9 38 38 H 1.09009 * 109.50647 * 61.57339 * 11 10 9 39 39 H 1.09004 * 109.46587 * 44.20492 * 13 12 11 40 40 H 1.08995 * 109.47299 * 284.19896 * 13 12 11 41 41 H 0.97008 * 119.99607 * 180.02562 * 18 17 15 42 42 H 1.09002 * 117.50498 * 215.00380 * 23 14 13 43 43 H 1.08998 * 117.49907 * 0.02562 * 23 14 13 44 44 H 1.09009 * 117.49995 * 359.97438 * 24 14 13 45 45 H 1.08998 * 117.50308 * 144.97146 * 24 14 13 46 46 H 1.09001 * 109.49139 * 60.64346 * 25 12 11 47 47 H 1.09005 * 109.49143 * 180.71432 * 25 12 11 48 48 H 1.09000 * 109.48445 * 296.77967 * 26 9 8 49 49 H 1.08996 * 109.48598 * 56.83891 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2074 0.0000 4 6 3.4362 1.2916 0.0005 5 6 4.0211 2.5436 0.0011 6 6 5.5217 2.6835 0.0011 7 7 3.2484 3.6195 0.0016 8 6 1.9284 3.5087 0.0010 9 7 1.1548 4.6562 0.0021 10 6 -0.2772 4.3259 0.0019 11 6 -1.0958 5.6167 -0.0772 12 7 -0.7572 6.4790 1.0636 13 6 -1.5784 7.6971 1.0647 14 6 -1.4939 8.3680 2.4372 15 6 -1.8508 7.4932 3.6113 16 1 -1.1082 7.2678 4.3623 17 6 -3.1256 6.9808 3.7269 18 7 -3.4076 6.1299 4.6892 19 14 -4.4503 7.4894 2.5119 20 1 -4.5131 6.5009 1.4056 21 1 -5.7631 7.5418 3.2041 22 1 -4.1278 8.8299 1.9603 23 6 -0.3995 9.4168 2.6446 24 6 -1.8624 9.8504 2.5228 25 6 0.6747 6.8093 1.0638 26 6 1.4928 5.5183 1.1433 27 7 1.3305 2.3264 0.0055 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8899 31 1 4.0433 0.3985 0.0003 32 1 5.8835 2.7170 1.0287 33 1 5.9660 1.8310 -0.5129 34 1 5.8008 3.6034 -0.5128 35 1 -0.5275 3.7923 0.9188 36 1 -0.5056 3.6971 -0.8587 37 1 -2.1584 5.3759 -0.0483 38 1 -0.8660 6.1370 -1.0071 39 1 -2.6151 7.4366 0.8509 40 1 -1.2114 8.3834 0.3016 41 1 -4.3044 5.7691 4.7702 42 1 0.0624 9.4742 3.6303 43 1 0.2600 9.6292 1.8032 44 1 -2.1648 10.3479 1.6013 45 1 -2.3635 10.1930 3.4282 46 1 0.9249 7.3430 0.1469 47 1 0.9028 7.4379 1.9247 48 1 1.2624 4.9979 2.0729 49 1 2.5555 5.7591 1.1147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602775217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:06 Heat of formation + Delta-G solvation = 53.233942 kcal Electronic energy + Delta-G solvation = -29567.150559 eV Core-core repulsion = 25723.868457 eV Total energy + Delta-G solvation = -3843.282102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.52055 -40.59341 -39.57449 -38.51894 -36.19116 -34.69082 -34.11873 -32.62186 -32.02304 -29.84016 -29.42004 -27.87183 -27.54827 -25.50043 -25.00436 -23.81685 -23.18576 -22.89918 -20.93767 -20.73968 -19.53168 -18.90464 -18.25476 -17.54765 -17.38536 -16.88533 -16.44172 -16.20822 -16.09622 -15.91594 -15.75546 -15.54077 -15.29412 -15.07865 -14.82705 -14.67700 -14.27791 -13.89286 -13.74851 -13.54540 -13.14085 -13.07787 -12.98121 -12.90290 -12.63726 -12.46436 -12.39397 -12.32020 -12.16918 -11.92198 -11.91295 -11.76172 -11.33317 -11.17326 -10.84616 -10.75493 -10.47105 -10.38729 -10.19011 -9.47369 -9.01033 -8.15600 -6.14649 -0.12684 0.11316 1.35978 1.42328 1.53816 1.80127 2.05275 2.46072 2.63127 2.86911 2.95709 3.20524 3.45712 3.49093 3.79851 3.85359 3.97044 4.11317 4.16132 4.19266 4.23163 4.27593 4.30490 4.34726 4.36044 4.39935 4.52192 4.54416 4.60643 4.65038 4.74356 4.78814 4.79893 4.81545 4.84367 4.90218 4.94606 4.95912 5.07621 5.14914 5.29779 5.40744 5.42740 5.56385 5.65763 5.81635 5.82516 6.20539 6.27150 6.31822 6.46519 6.87259 7.06125 7.49834 9.01492 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015151 B = 0.003446 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.667279 B = 8124.002874 C = 9158.693885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.305 6.305 3 C 0.366 3.634 4 C -0.275 4.275 5 C 0.215 3.785 6 C -0.098 4.098 7 N -0.566 5.566 8 C 0.521 3.479 9 N -0.459 5.459 10 C 0.089 3.911 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.102 3.898 14 C -0.018 4.018 15 C -0.443 4.443 16 H 0.022 0.978 17 C 0.024 3.976 18 N -0.958 5.958 19 Si 0.928 3.072 20 H -0.276 1.276 21 H -0.306 1.306 22 H -0.225 1.225 23 C -0.167 4.167 24 C -0.189 4.189 25 C 0.071 3.929 26 C 0.085 3.915 27 N -0.624 5.624 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.047 0.953 31 H 0.180 0.820 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.258 0.742 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.087 0.913 48 H 0.027 0.973 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.283 -8.064 -14.746 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.209 6.209 3 C 0.179 3.821 4 C -0.299 4.299 5 C 0.071 3.929 6 C -0.155 4.155 7 N -0.291 5.291 8 C 0.165 3.835 9 N -0.179 5.179 10 C -0.038 4.038 11 C -0.071 4.071 12 N -0.264 5.264 13 C -0.026 4.026 14 C -0.019 4.019 15 C -0.481 4.481 16 H 0.040 0.960 17 C -0.172 4.172 18 N -0.599 5.599 19 Si 0.754 3.246 20 H -0.202 1.202 21 H -0.234 1.234 22 H -0.147 1.147 23 C -0.204 4.204 24 C -0.228 4.228 25 C -0.058 4.058 26 C -0.041 4.041 27 N -0.361 5.361 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.197 0.803 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.045 0.955 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.652 -7.627 -14.665 21.438 hybrid contribution -1.122 -0.778 0.104 1.369 sum 12.530 -8.405 -14.561 20.968 Atomic orbital electron populations 1.23108 0.75544 1.05082 1.02118 1.86225 1.24481 1.23449 1.86713 1.20323 0.90358 0.84364 0.87042 1.21906 0.91865 1.01573 1.14575 1.22115 0.98829 0.86232 0.85760 1.20906 0.84106 1.05426 1.05037 1.67952 1.03829 1.34796 1.22501 1.20782 0.87498 0.86913 0.88319 1.58733 1.05959 1.11663 1.41516 1.21922 0.83339 0.96631 1.01935 1.22211 0.99285 0.93257 0.92344 1.61826 1.04479 1.17968 1.42112 1.21638 0.95797 0.89824 0.95307 1.19290 1.01535 0.87617 0.93462 1.20195 0.95433 1.27358 1.05133 0.95991 1.25583 1.00716 0.94147 0.96731 1.70076 1.21077 1.32790 1.35972 0.86079 0.77739 0.81344 0.79423 1.20210 1.23379 1.14741 1.22848 0.91106 1.04844 1.01584 1.23083 0.98327 0.99658 1.01689 1.22111 0.86750 0.95210 1.01680 1.22170 1.01253 0.92661 0.88066 1.67943 1.42275 0.99011 1.26888 0.92248 0.85068 0.93400 0.80266 0.88136 0.87166 0.89664 0.94516 0.88740 0.90618 0.93030 0.93210 0.93891 0.93289 0.90842 0.88037 0.88741 0.90866 0.93116 0.89484 0.95467 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.41 113.37 1.18 1.90 16 2 O -0.30 -7.27 10.49 -88.11 -0.92 -8.20 16 3 C 0.37 9.82 7.53 84.85 0.64 10.46 16 4 C -0.28 -5.87 9.79 22.55 0.22 -5.65 16 5 C 0.21 4.68 6.81 42.45 0.29 4.97 16 6 C -0.10 -1.16 10.21 71.24 0.73 -0.43 16 7 N -0.57 -16.21 9.65 -186.26 -1.80 -18.01 16 8 C 0.52 16.63 7.17 261.51 1.88 18.51 16 9 N -0.46 -14.84 4.77 -708.35 -3.38 -18.22 16 10 C 0.09 2.93 4.76 86.31 0.41 3.34 16 11 C 0.06 1.92 5.58 86.31 0.48 2.40 16 12 N -0.54 -20.83 4.35 -895.69 -3.90 -24.72 16 13 C 0.10 3.98 4.44 86.30 0.38 4.36 16 14 C -0.02 -0.78 0.60 -52.93 -0.03 -0.81 16 15 C -0.44 -24.85 9.09 25.60 0.23 -24.62 16 16 H 0.02 1.41 8.06 -2.91 -0.02 1.38 16 17 C 0.02 1.39 5.47 84.65 0.46 1.85 16 18 N -0.96 -60.95 13.96 21.45 0.30 -60.65 16 19 Si 0.93 44.32 24.79 68.60 1.70 46.02 16 20 H -0.28 -12.77 7.07 99.48 0.70 -12.07 16 21 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 22 H -0.22 -9.55 5.88 99.48 0.59 -8.97 16 23 C -0.17 -6.17 8.37 30.62 0.26 -5.91 16 24 C -0.19 -7.33 8.34 30.61 0.26 -7.07 16 25 C 0.07 2.36 5.36 86.31 0.46 2.82 16 26 C 0.08 2.79 5.46 86.31 0.47 3.26 16 27 N -0.62 -19.37 7.63 -310.88 -2.37 -21.74 16 28 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 29 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 31 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 0.69 8.09 -2.38 -0.02 0.67 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.04 1.41 8.03 -2.39 -0.02 1.39 16 36 H 0.09 2.84 7.81 -2.39 -0.02 2.82 16 37 H 0.08 2.60 8.02 -2.39 -0.02 2.58 16 38 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.05 2.05 4.60 -2.39 -0.01 2.04 16 40 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 41 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 42 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.10 3.12 8.06 -2.39 -0.02 3.10 16 44 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 45 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.09 3.07 6.11 -2.38 -0.01 3.06 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.11 3.17 7.64 -2.39 -0.02 3.16 16 Total: -1.00 -72.24 385.43 -1.25 -73.49 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.81 Total: 22.65 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 8.32 Total: 9.38 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -11.15 Total: -143.35 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.92 Total: -8.20 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.70 Total: 46.02 kcal Total: -72.24 -1.25 -73.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602775217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.722 kcal (2) G-P(sol) polarization free energy of solvation -72.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds