Wall clock time and date at job start Tue Mar 31 2020 18:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 126.12674 * 2 1 4 4 C 1.50702 * 126.04167 * 0.02562 * 3 2 1 5 5 C 1.50704 * 109.46907 * 84.71978 * 4 3 2 6 6 O 1.21282 * 119.99655 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99815 * 179.97438 * 5 4 3 8 8 C 1.47677 * 134.45047 * 179.97438 * 7 5 4 9 9 C 1.53444 * 85.96941 * 155.71345 * 8 7 5 10 10 C 1.47665 * 134.45637 * 0.02562 * 7 5 4 11 11 C 1.52628 * 113.71744 * 268.85066 * 9 8 7 12 12 C 1.53186 * 109.35647 * 171.27591 * 11 9 8 13 13 C 1.52669 * 109.42823 * 58.92861 * 12 11 9 14 14 N 1.46895 * 109.34484 * 303.77394 * 13 12 11 15 15 C 1.36941 * 120.68886 * 235.30832 * 14 13 12 16 16 H 1.07999 * 120.00331 * 151.85862 * 15 14 13 17 17 C 1.38812 * 120.00065 * 331.87001 * 15 14 13 18 18 N 1.31627 * 119.99737 * 335.04228 * 17 15 14 19 19 Si 1.86800 * 120.00421 * 155.04594 * 17 15 14 20 20 H 1.48499 * 109.46785 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47053 * 119.99848 * 19 17 15 22 22 H 1.48498 * 109.47104 * 239.99637 * 19 17 15 23 23 C 1.47110 * 118.62431 * 55.03629 * 14 13 12 24 24 C 1.39874 * 107.92039 * 179.75588 * 3 2 1 25 25 N 1.30842 * 108.19998 * 0.23855 * 24 3 2 26 26 N 1.34953 * 126.12451 * 180.16615 * 2 1 3 27 27 C 1.46500 * 126.03799 * 0.02562 * 26 2 1 28 28 H 1.09008 * 109.46764 * 90.00398 * 1 2 3 29 29 H 1.08995 * 109.47627 * 210.00393 * 1 2 3 30 30 H 1.09000 * 109.47283 * 330.01142 * 1 2 3 31 31 H 1.08996 * 109.47015 * 324.71978 * 4 3 2 32 32 H 1.08997 * 109.47097 * 204.71658 * 4 3 2 33 33 H 1.08997 * 113.79514 * 41.45269 * 8 7 5 34 34 H 1.08994 * 113.79584 * 269.97738 * 8 7 5 35 35 H 1.09002 * 113.79643 * 90.02067 * 10 7 5 36 36 H 1.09000 * 113.79467 * 318.54909 * 10 7 5 37 37 H 1.09002 * 109.49357 * 291.24383 * 11 9 8 38 38 H 1.09005 * 109.49027 * 51.31330 * 11 9 8 39 39 H 1.08998 * 109.49150 * 179.03004 * 12 11 9 40 40 H 1.09005 * 109.48818 * 299.09987 * 12 11 9 41 41 H 1.08998 * 109.43757 * 183.78551 * 13 12 11 42 42 H 1.09004 * 109.36592 * 63.70916 * 13 12 11 43 43 H 0.96996 * 119.99632 * 354.27097 * 18 17 15 44 44 H 1.09002 * 109.63459 * 68.57930 * 23 14 13 45 45 H 1.09005 * 109.64107 * 188.98574 * 23 14 13 46 46 H 1.07994 * 125.90324 * 180.21767 * 24 3 2 47 47 H 1.09000 * 109.46878 * 270.30495 * 27 26 2 48 48 H 1.08996 * 109.46740 * 30.30440 * 27 26 2 49 49 H 1.08996 * 109.46983 * 150.30690 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 0.0005 5 6 1.5655 2.9653 1.4156 6 8 1.7269 2.1889 2.3332 7 7 1.1388 4.2199 1.6614 8 6 0.7792 4.9694 2.8819 9 6 1.1167 6.2309 2.0761 10 6 0.8425 5.3953 0.8181 11 6 2.5703 6.6759 2.2126 12 6 2.8536 7.7993 1.2104 13 6 1.9106 8.9695 1.4793 14 7 0.5207 8.4977 1.4209 15 6 -0.3834 9.0895 0.5797 16 1 -1.2143 8.5188 0.1920 17 6 -0.2320 10.4231 0.2252 18 7 0.4264 11.2436 1.0163 19 14 -0.9627 11.0532 -1.3743 20 1 -1.6483 9.9395 -2.0778 21 1 -1.9412 12.1310 -1.0809 22 1 0.1211 11.5898 -2.2361 23 6 0.1217 7.3724 2.2803 24 6 3.6335 0.6559 0.0057 25 7 3.6334 -0.6525 0.0038 26 7 2.3026 -1.0901 -0.0032 27 6 1.8538 -2.4846 -0.0077 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5136 31 1 0.9333 2.6167 -0.5926 32 1 2.6205 3.1594 -0.4293 33 1 1.4511 4.7911 3.7214 34 1 -0.2734 4.8894 3.1530 35 1 -0.1914 5.4418 0.4760 36 1 1.5647 5.5554 0.0175 37 1 2.7459 7.0391 3.2252 38 1 3.2296 5.8321 2.0091 39 1 3.8864 8.1306 1.3179 40 1 2.6928 7.4315 0.1969 41 1 2.0658 9.7410 0.7251 42 1 2.1154 9.3787 2.4686 43 1 0.7337 10.9383 1.8841 44 1 0.1337 7.6864 3.3240 45 1 -0.8808 7.0415 2.0088 46 1 4.5084 1.2891 0.0104 47 1 1.7370 -2.8320 1.0188 48 1 0.8982 -2.5570 -0.5269 49 1 2.5925 -3.1023 -0.5185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981803147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:58 Heat of formation + Delta-G solvation = 73.854510 kcal Electronic energy + Delta-G solvation = -29060.968592 eV Core-core repulsion = 25218.580665 eV Total energy + Delta-G solvation = -3842.387927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35696 -41.70933 -39.49462 -37.59688 -34.63562 -34.50853 -33.86482 -32.35545 -31.66163 -30.29079 -27.68079 -27.47517 -27.21753 -27.05215 -25.80269 -23.97917 -22.42587 -21.85995 -20.75420 -19.93002 -19.26554 -19.13729 -17.94143 -17.51160 -16.90715 -16.69490 -16.39371 -16.14146 -15.84695 -15.51516 -15.36425 -15.22407 -14.94156 -14.70937 -14.42957 -14.10554 -13.91302 -13.89417 -13.81602 -13.39053 -13.29314 -13.24934 -13.19541 -13.02057 -12.84505 -12.68862 -12.61250 -12.42621 -11.93759 -11.82533 -11.74309 -11.59606 -11.56233 -11.29118 -11.00548 -10.80842 -10.36353 -10.19194 -9.64573 -9.26838 -8.82454 -8.14539 -5.30535 0.87825 1.57659 1.65441 1.68311 1.71207 1.72233 1.87267 2.08302 2.71821 3.23401 3.37328 3.59155 3.65927 3.74103 3.76358 3.83851 4.02532 4.08359 4.20206 4.25685 4.32340 4.36700 4.37982 4.43504 4.48264 4.55832 4.60689 4.63248 4.65400 4.67275 4.73691 4.77113 4.86899 4.92471 4.95205 4.98066 4.99271 5.06056 5.08795 5.21574 5.25939 5.30739 5.40544 5.54807 5.67335 5.94474 6.13625 6.48114 6.71315 6.78899 7.13723 7.23486 7.86433 8.32062 9.10212 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002541 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.273467 B =11017.014931 C =11430.101045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.095 3.905 3 C -0.243 4.243 4 C -0.045 4.045 5 C 0.533 3.467 6 O -0.585 6.585 7 N -0.639 5.639 8 C 0.117 3.883 9 C -0.098 4.098 10 C 0.130 3.870 11 C -0.076 4.076 12 C -0.123 4.123 13 C 0.154 3.846 14 N -0.611 5.611 15 C -0.341 4.341 16 H 0.057 0.943 17 C -0.079 4.079 18 N -0.949 5.949 19 Si 1.114 2.886 20 H -0.268 1.268 21 H -0.298 1.298 22 H -0.292 1.292 23 C 0.164 3.836 24 C 0.050 3.950 25 N -0.336 5.336 26 N -0.381 5.381 27 C 0.091 3.909 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.044 0.956 42 H -0.001 1.001 43 H 0.254 0.746 44 H 0.014 0.986 45 H 0.061 0.939 46 H 0.194 0.806 47 H 0.078 0.922 48 H 0.114 0.886 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -22.909 -4.130 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 C -0.255 4.255 4 C -0.086 4.086 5 C 0.324 3.676 6 O -0.466 6.466 7 N -0.374 5.374 8 C -0.006 4.006 9 C -0.100 4.100 10 C 0.008 3.992 11 C -0.113 4.113 12 C -0.162 4.162 13 C 0.028 3.972 14 N -0.335 5.335 15 C -0.471 4.471 16 H 0.075 0.925 17 C -0.275 4.275 18 N -0.591 5.591 19 Si 0.940 3.060 20 H -0.193 1.193 21 H -0.226 1.226 22 H -0.219 1.219 23 C 0.038 3.962 24 C -0.135 4.135 25 N -0.158 5.158 26 N -0.164 5.164 27 C -0.048 4.048 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.080 0.920 46 H 0.210 0.790 47 H 0.097 0.903 48 H 0.132 0.868 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.181 -23.466 -4.702 23.962 hybrid contribution -0.178 -0.115 1.575 1.589 sum 1.003 -23.581 -3.127 23.809 Atomic orbital electron populations 1.20540 0.85257 1.04341 1.04614 1.21300 0.95822 0.86902 0.99337 1.19417 0.92683 0.94756 1.18624 1.19824 1.04461 0.92144 0.92123 1.20932 0.75619 0.78865 0.92168 1.90664 1.54919 1.52778 1.48192 1.50193 1.65236 1.10606 1.11377 1.23172 1.01140 0.86631 0.89670 1.22398 0.97307 0.93796 0.96528 1.23199 1.01856 0.79290 0.94885 1.21040 0.93486 0.97629 0.99151 1.21823 0.98691 0.96215 0.99424 1.20698 0.84202 0.95269 0.97031 1.44309 1.05706 1.37230 1.46258 1.20224 1.09106 0.94537 1.23189 0.92507 1.27040 1.01222 0.92581 1.06637 1.70845 1.41956 1.36630 1.09691 0.82871 0.75244 0.75226 0.72702 1.19291 1.22571 1.21857 1.20861 0.95738 0.86956 0.92660 1.24030 0.98469 0.92174 0.98871 1.77242 0.98212 1.13467 1.26833 1.48681 1.03353 1.07297 1.57054 1.22154 1.02395 0.76049 1.04242 0.87745 0.89553 0.90708 0.86667 0.86791 0.90693 0.88817 0.89003 0.89271 0.92290 0.91466 0.91251 0.92069 0.93772 0.98308 0.93613 0.96812 0.92044 0.78960 0.90309 0.86758 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.59 71.24 0.68 -0.57 16 2 C 0.10 2.04 6.93 41.40 0.29 2.33 16 3 C -0.24 -5.80 4.59 -20.14 -0.09 -5.89 16 4 C -0.04 -0.93 5.48 29.10 0.16 -0.77 16 5 C 0.53 14.59 8.05 87.66 0.71 15.30 16 6 O -0.59 -20.91 16.76 -3.04 -0.05 -20.97 16 7 N -0.64 -16.42 3.45 -843.24 -2.91 -19.33 16 8 C 0.12 3.04 7.97 86.30 0.69 3.73 16 9 C -0.10 -2.81 0.87 -52.02 -0.05 -2.85 16 10 C 0.13 3.26 7.59 86.32 0.66 3.92 16 11 C -0.08 -2.18 5.03 30.53 0.15 -2.03 16 12 C -0.12 -4.06 5.99 30.55 0.18 -3.88 16 13 C 0.15 6.75 4.62 86.19 0.40 7.15 16 14 N -0.61 -27.75 2.86 -700.45 -2.00 -29.75 16 15 C -0.34 -17.51 9.50 84.03 0.80 -16.71 16 16 H 0.06 2.87 7.94 -2.91 -0.02 2.85 16 17 C -0.08 -4.26 4.69 84.86 0.40 -3.86 16 18 N -0.95 -56.02 12.39 21.65 0.27 -55.75 16 19 Si 1.11 48.70 29.99 68.60 2.06 50.76 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 C 0.16 5.96 5.70 86.20 0.49 6.45 16 24 C 0.05 1.25 11.96 85.24 1.02 2.27 16 25 N -0.34 -9.12 12.58 -57.02 -0.72 -9.83 16 26 N -0.38 -8.39 4.01 -356.03 -1.43 -9.82 16 27 C 0.09 1.10 11.09 127.77 1.42 2.51 16 28 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.09 0.92 7.74 -2.39 -0.02 0.90 16 30 H 0.07 1.22 7.88 -2.39 -0.02 1.20 16 31 H 0.12 1.88 8.02 -2.39 -0.02 1.86 16 32 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 34 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 35 H 0.09 2.26 7.98 -2.39 -0.02 2.24 16 36 H 0.09 2.13 7.37 -2.39 -0.02 2.11 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.79 8.02 -2.38 -0.02 1.77 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.01 7.37 -2.38 -0.02 1.99 16 41 H 0.04 2.25 6.23 -2.39 -0.01 2.24 16 42 H 0.00 -0.05 7.94 -2.38 -0.02 -0.07 16 43 H 0.25 15.32 6.77 -92.71 -0.63 14.70 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 2.19 7.79 -2.38 -0.02 2.17 16 46 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 47 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.11 0.66 7.68 -2.39 -0.02 0.64 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.36 392.97 4.19 -70.18 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.07 Total: 17.42 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 7.90 Total: 7.11 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.79 Total: -124.49 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.06 Total: 50.76 kcal Total: -74.36 4.19 -70.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981803147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.031 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds