Wall clock time and date at job start Tue Mar 31 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38046 * 126.29647 * 2 1 4 4 C 1.47428 * 126.41151 * 359.96641 * 3 2 1 5 5 O 1.21603 * 120.00277 * 0.32317 * 4 3 2 6 6 N 1.34779 * 120.00035 * 180.31745 * 4 3 2 7 7 C 1.46501 * 120.00206 * 180.02562 * 6 4 3 8 8 H 1.09001 * 110.88569 * 328.88065 * 7 6 4 9 9 C 1.55156 * 111.00350 * 205.00425 * 7 6 4 10 10 C 1.54326 * 102.93841 * 277.42522 * 9 7 6 11 11 N 1.47017 * 107.27344 * 337.81105 * 10 9 7 12 12 C 1.36940 * 125.64964 * 178.99064 * 11 10 9 13 13 H 1.07999 * 120.00177 * 174.78306 * 12 11 10 14 14 C 1.38817 * 119.99442 * 354.77852 * 12 11 10 15 15 N 1.31618 * 120.00511 * 7.06124 * 14 12 11 16 16 Si 1.86806 * 119.99771 * 187.05525 * 14 12 11 17 17 H 1.48494 * 109.46944 * 94.98870 * 16 14 12 18 18 H 1.48495 * 109.47137 * 214.99334 * 16 14 12 19 19 H 1.48505 * 109.46811 * 334.98989 * 16 14 12 20 20 C 1.47427 * 108.70257 * 358.93726 * 11 10 9 21 21 C 1.41295 * 107.17233 * 180.25832 * 3 2 1 22 22 N 1.30448 * 108.02281 * 359.74598 * 21 3 2 23 23 N 1.34259 * 126.28960 * 179.81636 * 2 1 3 24 24 C 1.46500 * 125.75743 * 359.97438 * 23 2 1 25 25 C 1.54271 * 110.03262 * 122.54805 * 24 23 2 26 26 C 1.54888 * 104.19337 * 95.68084 * 25 24 23 27 27 C 1.54887 * 102.74929 * 37.94089 * 26 25 24 28 28 C 1.53875 * 110.03611 * 239.71952 * 24 23 2 29 29 H 1.09002 * 109.47084 * 270.18663 * 1 2 3 30 30 H 1.08998 * 109.46823 * 30.18176 * 1 2 3 31 31 H 1.09003 * 109.47345 * 150.17979 * 1 2 3 32 32 H 0.97006 * 119.99808 * 0.02562 * 6 4 3 33 33 H 1.09002 * 110.72126 * 35.78906 * 9 7 6 34 34 H 1.08998 * 110.72010 * 159.06631 * 9 7 6 35 35 H 1.09004 * 109.88005 * 97.22960 * 10 9 7 36 36 H 1.09001 * 109.88013 * 218.23517 * 10 9 7 37 37 H 0.96999 * 120.00308 * 179.97438 * 15 14 12 38 38 H 1.08995 * 110.36864 * 265.29154 * 20 11 10 39 39 H 1.09001 * 110.36283 * 142.96718 * 20 11 10 40 40 H 1.08001 * 125.98747 * 179.71938 * 21 3 2 41 41 H 1.09002 * 110.05184 * 1.14155 * 24 23 2 42 42 H 1.08996 * 110.48457 * 214.35823 * 25 24 23 43 43 H 1.08996 * 110.48457 * 337.00411 * 25 24 23 44 44 H 1.08997 * 110.75526 * 279.62996 * 26 25 24 45 45 H 1.08995 * 110.75679 * 156.25766 * 26 25 24 46 46 H 1.09007 * 110.48972 * 203.38062 * 27 26 25 47 47 H 1.09005 * 110.48682 * 80.73643 * 27 26 25 48 48 H 1.08996 * 110.02800 * 359.97438 * 28 24 23 49 49 H 1.09002 * 110.03070 * 121.42729 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0007 5 8 0.6997 2.7878 0.0046 6 7 2.8000 3.5106 -0.0071 7 6 2.3646 4.9094 -0.0072 8 1 1.4140 5.0205 -0.5288 9 6 3.4496 5.8295 -0.6266 10 6 4.4141 6.0695 0.5539 11 7 3.6604 5.8197 1.7912 12 6 4.1622 5.9052 3.0625 13 1 3.5057 5.7844 3.9115 14 6 5.5148 6.1470 3.2599 15 7 6.2891 6.4317 2.2343 16 14 6.2362 6.0684 4.9812 17 1 6.8053 4.7174 5.2182 18 1 7.3078 7.0876 5.1159 19 1 5.1688 6.3377 5.9780 20 6 2.2746 5.4630 1.4367 21 6 3.6591 0.6497 -0.0061 22 7 3.6340 -0.6545 -0.0040 23 7 2.3016 -1.0822 0.0035 24 6 1.8500 -2.4758 0.0085 25 6 2.4285 -3.2232 -1.2109 26 6 3.7003 -3.9168 -0.6629 27 6 3.2642 -4.3585 0.7562 28 6 2.3814 -3.1977 1.2592 29 1 -0.3633 0.0033 1.0277 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 3.7463 3.2972 -0.0116 33 1 3.9612 5.3249 -1.4462 34 1 3.0117 6.7690 -0.9640 35 1 5.2579 5.3826 0.4887 36 1 4.7722 7.0989 0.5367 37 1 7.2342 6.6010 2.3723 38 1 1.6364 6.3462 1.4653 39 1 1.8950 4.6975 2.1135 40 1 4.5449 1.2675 -0.0119 41 1 0.7609 -2.5159 -0.0114 42 1 1.7175 -3.9639 -1.5768 43 1 2.6884 -2.5193 -2.0015 44 1 4.5315 -3.2137 -0.6102 45 1 3.9622 -4.7812 -1.2730 46 1 4.1341 -4.4832 1.4011 47 1 2.6882 -5.2826 0.7080 48 1 2.9756 -2.5112 1.8622 49 1 1.5502 -3.5881 1.8464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015965521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:48 Heat of formation + Delta-G solvation = 53.990685 kcal Electronic energy + Delta-G solvation = -29003.439147 eV Core-core repulsion = 25160.189860 eV Total energy + Delta-G solvation = -3843.249287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56107 -39.16531 -38.06553 -36.97424 -33.73652 -32.93980 -31.83619 -31.38024 -29.18714 -29.15154 -28.09117 -27.37026 -26.78067 -24.42505 -22.57750 -22.29786 -21.03002 -20.12642 -19.96179 -19.54068 -19.13972 -17.45193 -16.86848 -16.37056 -15.71064 -15.60674 -15.48671 -14.93668 -14.59226 -14.22021 -14.04666 -13.88488 -13.73671 -13.55947 -13.14241 -13.05416 -12.87357 -12.34652 -12.25610 -12.08842 -11.89064 -11.83308 -11.74330 -11.51749 -11.47007 -11.34365 -10.97626 -10.90429 -10.87911 -10.70922 -10.62732 -10.26906 -10.08514 -9.90206 -9.65279 -9.42326 -9.36354 -8.70694 -8.55139 -8.30746 -6.76917 -5.69462 -3.00315 1.57918 2.23590 2.31126 3.42484 3.48370 3.49753 3.69919 3.81116 3.99733 4.13814 4.37170 4.52442 4.53834 4.70853 4.83745 4.93101 5.02506 5.03498 5.17096 5.27845 5.33020 5.40302 5.43034 5.46848 5.49272 5.50281 5.54119 5.55966 5.65672 5.77878 5.78803 5.85998 5.89655 5.90967 6.03968 6.06382 6.29533 6.44228 6.48959 6.57093 6.63119 6.77114 6.87853 7.17966 7.57651 7.60518 7.61317 7.83882 8.08314 8.29003 8.73646 9.25894 9.86165 10.52701 11.42830 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.002997 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.143711 B = 9341.858713 C =10504.420002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.150 3.850 3 C -0.290 4.290 4 C 0.595 3.405 5 O -0.561 6.561 6 N -0.700 5.700 7 C 0.132 3.868 8 H 0.090 0.910 9 C -0.154 4.154 10 C 0.175 3.825 11 N -0.603 5.603 12 C -0.223 4.223 13 H 0.076 0.924 14 C -0.008 4.008 15 N -0.921 5.921 16 Si 0.908 3.092 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C 0.125 3.875 21 C 0.084 3.916 22 N -0.293 5.293 23 N -0.356 5.356 24 C 0.152 3.848 25 C -0.129 4.129 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.132 4.132 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.251 0.749 38 H 0.026 0.974 39 H 0.043 0.957 40 H 0.189 0.811 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -20.286 -8.870 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 C -0.304 4.304 4 C 0.382 3.618 5 O -0.442 6.442 6 N -0.349 5.349 7 C 0.026 3.974 8 H 0.108 0.892 9 C -0.193 4.193 10 C 0.050 3.950 11 N -0.330 5.330 12 C -0.351 4.351 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.002 4.002 21 C -0.104 4.104 22 N -0.111 5.111 23 N -0.136 5.136 24 C 0.050 3.950 25 C -0.167 4.167 26 C -0.160 4.160 27 C -0.158 4.158 28 C -0.170 4.170 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.206 0.794 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.945 -21.240 -8.755 24.654 hybrid contribution 0.619 0.722 1.052 1.418 sum -8.326 -20.518 -7.703 23.445 Atomic orbital electron populations 1.20658 0.86429 1.04423 1.04029 1.21472 0.94763 0.86370 0.95586 1.20061 0.92833 0.93680 1.23865 1.17154 0.85467 0.83610 0.75527 1.90678 1.16616 1.84395 1.52471 1.45582 1.09618 1.05616 1.74052 1.22086 0.97816 0.79655 0.97854 0.89223 1.23220 0.97963 0.98511 0.99603 1.21167 0.91534 1.00316 0.81958 1.44473 1.05165 1.80982 1.02406 1.19055 0.91719 1.41860 0.82510 0.90599 1.24774 0.96170 1.02074 0.97364 1.69964 1.05003 1.53735 1.28234 0.86150 0.78793 0.77300 0.83880 1.21721 1.21846 1.20722 1.21953 0.88515 0.96514 0.93253 1.24101 0.97401 0.92014 0.96892 1.77129 0.96052 1.12920 1.25037 1.48637 1.04026 1.05420 1.55518 1.22084 0.99078 0.76572 0.97259 1.22687 0.98195 0.99318 0.96496 1.22502 0.97836 1.00077 0.95562 1.22325 0.99342 0.97273 0.96859 1.22527 1.00233 0.97941 0.96328 0.89727 0.87443 0.91621 0.76474 0.91610 0.91046 0.93501 0.94040 0.93866 0.95625 0.93901 0.79418 0.87656 0.90105 0.90630 0.90201 0.91449 0.91185 0.91489 0.90142 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.41 36.00 0.34 -0.68 16 2 C 0.15 1.97 7.01 -81.60 -0.57 1.39 16 3 C -0.29 -4.39 6.13 -105.06 -0.64 -5.03 16 4 C 0.59 10.28 7.81 -12.52 -0.10 10.18 16 5 O -0.56 -10.76 14.48 5.28 0.08 -10.69 16 6 N -0.70 -12.04 5.18 -52.80 -0.27 -12.31 16 7 C 0.13 2.40 3.43 -65.79 -0.23 2.17 16 8 H 0.09 1.58 7.54 -51.93 -0.39 1.19 16 9 C -0.15 -2.76 6.55 -24.90 -0.16 -2.93 16 10 C 0.17 4.10 5.37 -3.07 -0.02 4.08 16 11 N -0.60 -15.28 3.39 -170.08 -0.58 -15.86 16 12 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 13 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 14 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 15 N -0.92 -26.71 10.36 55.49 0.57 -26.13 16 16 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.12 2.70 6.93 -2.53 -0.02 2.69 16 21 C 0.08 1.18 11.50 -16.98 -0.20 0.99 16 22 N -0.29 -4.03 12.26 30.86 0.38 -3.65 16 23 N -0.36 -4.24 3.13 -49.09 -0.15 -4.40 16 24 C 0.15 1.29 3.67 -66.81 -0.25 1.04 16 25 C -0.13 -0.97 6.45 -25.07 -0.16 -1.13 16 26 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 27 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 28 C -0.13 -1.07 6.54 -25.61 -0.17 -1.24 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.32 6.52 -51.93 -0.34 0.98 16 31 H 0.06 0.49 7.07 -51.93 -0.37 0.12 16 32 H 0.40 6.60 7.62 -40.82 -0.31 6.29 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 36 H 0.04 1.09 7.61 -51.93 -0.40 0.69 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.19 2.32 7.50 -52.49 -0.39 1.93 16 41 H 0.11 0.68 6.67 -51.93 -0.35 0.33 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -32.83 389.38 -9.83 -42.66 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.94 Total: 4.57 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.76 Total: 2.68 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.05 Total: -62.35 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.83 -9.83 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015965521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.651 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds