Wall clock time and date at job start Tue Mar 31 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38046 * 126.29647 * 2 1 4 4 C 1.47428 * 126.41151 * 359.96641 * 3 2 1 5 5 O 1.21603 * 120.00277 * 0.32317 * 4 3 2 6 6 N 1.34779 * 120.00035 * 180.31745 * 4 3 2 7 7 C 1.46501 * 120.00206 * 180.02562 * 6 4 3 8 8 H 1.09001 * 110.88569 * 328.88065 * 7 6 4 9 9 C 1.55156 * 111.00350 * 205.00425 * 7 6 4 10 10 C 1.54326 * 102.93841 * 277.42522 * 9 7 6 11 11 N 1.47017 * 107.27344 * 337.81105 * 10 9 7 12 12 C 1.36940 * 125.64964 * 178.99064 * 11 10 9 13 13 H 1.07999 * 120.00177 * 174.78306 * 12 11 10 14 14 C 1.38817 * 119.99442 * 354.77852 * 12 11 10 15 15 N 1.31618 * 120.00511 * 7.06124 * 14 12 11 16 16 Si 1.86806 * 119.99771 * 187.05525 * 14 12 11 17 17 H 1.48494 * 109.46944 * 94.98870 * 16 14 12 18 18 H 1.48495 * 109.47137 * 214.99334 * 16 14 12 19 19 H 1.48505 * 109.46811 * 334.98989 * 16 14 12 20 20 C 1.47427 * 108.70257 * 358.93726 * 11 10 9 21 21 C 1.41295 * 107.17233 * 180.25832 * 3 2 1 22 22 N 1.30448 * 108.02281 * 359.74598 * 21 3 2 23 23 N 1.34259 * 126.28960 * 179.81636 * 2 1 3 24 24 C 1.46500 * 125.75743 * 359.97438 * 23 2 1 25 25 C 1.54271 * 110.03262 * 122.54805 * 24 23 2 26 26 C 1.54888 * 104.19337 * 95.68084 * 25 24 23 27 27 C 1.54887 * 102.74929 * 37.94089 * 26 25 24 28 28 C 1.53875 * 110.03611 * 239.71952 * 24 23 2 29 29 H 1.09002 * 109.47084 * 270.18663 * 1 2 3 30 30 H 1.08998 * 109.46823 * 30.18176 * 1 2 3 31 31 H 1.09003 * 109.47345 * 150.17979 * 1 2 3 32 32 H 0.97006 * 119.99808 * 0.02562 * 6 4 3 33 33 H 1.09002 * 110.72126 * 35.78906 * 9 7 6 34 34 H 1.08998 * 110.72010 * 159.06631 * 9 7 6 35 35 H 1.09004 * 109.88005 * 97.22960 * 10 9 7 36 36 H 1.09001 * 109.88013 * 218.23517 * 10 9 7 37 37 H 0.96999 * 120.00308 * 179.97438 * 15 14 12 38 38 H 1.08995 * 110.36864 * 265.29154 * 20 11 10 39 39 H 1.09001 * 110.36283 * 142.96718 * 20 11 10 40 40 H 1.08001 * 125.98747 * 179.71938 * 21 3 2 41 41 H 1.09002 * 110.05184 * 1.14155 * 24 23 2 42 42 H 1.08996 * 110.48457 * 214.35823 * 25 24 23 43 43 H 1.08996 * 110.48457 * 337.00411 * 25 24 23 44 44 H 1.08997 * 110.75526 * 279.62996 * 26 25 24 45 45 H 1.08995 * 110.75679 * 156.25766 * 26 25 24 46 46 H 1.09007 * 110.48972 * 203.38062 * 27 26 25 47 47 H 1.09005 * 110.48682 * 80.73643 * 27 26 25 48 48 H 1.08996 * 110.02800 * 359.97438 * 28 24 23 49 49 H 1.09002 * 110.03070 * 121.42729 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0007 5 8 0.6997 2.7878 0.0046 6 7 2.8000 3.5106 -0.0071 7 6 2.3646 4.9094 -0.0072 8 1 1.4140 5.0205 -0.5288 9 6 3.4496 5.8295 -0.6266 10 6 4.4141 6.0695 0.5539 11 7 3.6604 5.8197 1.7912 12 6 4.1622 5.9052 3.0625 13 1 3.5057 5.7844 3.9115 14 6 5.5148 6.1470 3.2599 15 7 6.2891 6.4317 2.2343 16 14 6.2362 6.0684 4.9812 17 1 6.8053 4.7174 5.2182 18 1 7.3078 7.0876 5.1159 19 1 5.1688 6.3377 5.9780 20 6 2.2746 5.4630 1.4367 21 6 3.6591 0.6497 -0.0061 22 7 3.6340 -0.6545 -0.0040 23 7 2.3016 -1.0822 0.0035 24 6 1.8500 -2.4758 0.0085 25 6 2.4285 -3.2232 -1.2109 26 6 3.7003 -3.9168 -0.6629 27 6 3.2642 -4.3585 0.7562 28 6 2.3814 -3.1977 1.2592 29 1 -0.3633 0.0033 1.0277 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 3.7463 3.2972 -0.0116 33 1 3.9612 5.3249 -1.4462 34 1 3.0117 6.7690 -0.9640 35 1 5.2579 5.3826 0.4887 36 1 4.7722 7.0989 0.5367 37 1 7.2342 6.6010 2.3723 38 1 1.6364 6.3462 1.4653 39 1 1.8950 4.6975 2.1135 40 1 4.5449 1.2675 -0.0119 41 1 0.7609 -2.5159 -0.0114 42 1 1.7175 -3.9639 -1.5768 43 1 2.6884 -2.5193 -2.0015 44 1 4.5315 -3.2137 -0.6102 45 1 3.9622 -4.7812 -1.2730 46 1 4.1341 -4.4832 1.4011 47 1 2.6882 -5.2826 0.7080 48 1 2.9756 -2.5112 1.8622 49 1 1.5502 -3.5881 1.8464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015965521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:48 Heat of formation + Delta-G solvation = 33.968831 kcal Electronic energy + Delta-G solvation = -29004.307359 eV Core-core repulsion = 25160.189860 eV Total energy + Delta-G solvation = -3844.117500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.56687 -40.54675 -38.92968 -38.48369 -35.37504 -34.07840 -33.42692 -32.46020 -30.98296 -29.74670 -29.34128 -28.39414 -28.05831 -26.38387 -23.82533 -23.18754 -21.96872 -21.64521 -21.37119 -20.83182 -20.03569 -18.93334 -18.37380 -17.34004 -17.21901 -16.62960 -16.51695 -16.32386 -15.88851 -15.59622 -15.50235 -15.25411 -14.95259 -14.63436 -14.30800 -14.06550 -13.89422 -13.80365 -13.67977 -13.53794 -13.15578 -12.87550 -12.82797 -12.81556 -12.53991 -12.22863 -12.09608 -12.05529 -12.04910 -12.00551 -11.99616 -11.81928 -11.74932 -11.56311 -11.48333 -10.76536 -10.67897 -10.32710 -10.03649 -9.52981 -8.82734 -7.84608 -5.16958 0.53278 1.17107 1.35612 1.45445 1.46640 1.55303 2.38972 2.49871 2.53931 3.29730 3.34326 3.51436 3.57513 3.69339 3.71960 3.83531 3.93276 4.03971 4.13488 4.19745 4.25434 4.37815 4.43009 4.45017 4.50078 4.58442 4.66581 4.70201 4.72619 4.79195 4.82609 4.92732 4.94957 4.97195 5.00220 5.06615 5.08852 5.16968 5.19113 5.25985 5.39722 5.46735 5.48626 5.66314 5.72806 5.79973 5.99885 6.22133 6.54876 6.73959 7.13647 7.38169 7.79553 8.44338 9.25772 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.002997 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.143711 B = 9341.858713 C =10504.420002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.155 3.845 3 C -0.320 4.320 4 C 0.595 3.405 5 O -0.583 6.583 6 N -0.701 5.701 7 C 0.145 3.855 8 H 0.105 0.895 9 C -0.134 4.134 10 C 0.183 3.817 11 N -0.620 5.620 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.058 4.058 15 N -0.944 5.944 16 Si 0.971 3.029 17 H -0.288 1.288 18 H -0.293 1.293 19 H -0.273 1.273 20 C 0.122 3.878 21 C 0.076 3.924 22 N -0.308 5.308 23 N -0.346 5.346 24 C 0.139 3.861 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.131 4.131 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.403 0.597 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.021 0.979 36 H 0.007 0.993 37 H 0.247 0.753 38 H 0.032 0.968 39 H 0.027 0.973 40 H 0.196 0.804 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -22.567 -9.424 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.021 3.979 3 C -0.335 4.335 4 C 0.385 3.615 5 O -0.465 6.465 6 N -0.349 5.349 7 C 0.039 3.961 8 H 0.123 0.877 9 C -0.173 4.173 10 C 0.059 3.941 11 N -0.347 5.347 12 C -0.369 4.369 13 H 0.090 0.910 14 C -0.251 4.251 15 N -0.592 5.592 16 Si 0.800 3.200 17 H -0.216 1.216 18 H -0.219 1.219 19 H -0.198 1.198 20 C -0.004 4.004 21 C -0.111 4.111 22 N -0.127 5.127 23 N -0.126 5.126 24 C 0.039 3.961 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.153 4.153 28 C -0.169 4.169 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.238 0.762 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.212 0.788 41 H 0.154 0.846 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.067 0.933 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.565 -23.551 -9.317 27.442 hybrid contribution 1.080 1.355 1.245 2.134 sum -9.485 -22.196 -8.071 25.451 Atomic orbital electron populations 1.20717 0.84394 1.05394 1.04681 1.21874 0.95977 0.86085 0.93943 1.20032 0.93742 0.93173 1.26564 1.17426 0.85071 0.84347 0.74699 1.90656 1.17376 1.84876 1.53611 1.45578 1.09857 1.05307 1.74199 1.21920 0.98574 0.80177 0.95415 0.87702 1.23079 0.96571 0.99724 0.97884 1.20956 0.92184 0.97481 0.83526 1.44700 1.06783 1.80968 1.02235 1.19333 0.92137 1.41648 0.83821 0.91016 1.25510 0.96507 1.02225 1.00886 1.70155 1.04803 1.54430 1.29853 0.85173 0.77909 0.76959 0.79986 1.21555 1.21932 1.19822 1.22074 0.86743 0.96380 0.95196 1.24253 0.97543 0.92325 0.96986 1.77095 0.97555 1.12705 1.25296 1.48953 1.03160 1.06548 1.53944 1.22599 1.00877 0.74744 0.97919 1.22699 0.98646 0.99375 0.95401 1.22487 0.97144 1.00029 0.96509 1.22328 0.99196 0.97825 0.95994 1.22529 1.00740 0.97624 0.96004 0.89038 0.89191 0.87923 0.76195 0.89005 0.89051 0.96093 0.97469 0.94354 0.95000 0.95509 0.78778 0.84637 0.86978 0.92515 0.93096 0.89911 0.91998 0.89033 0.93304 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.41 71.23 0.67 -1.09 16 2 C 0.15 3.88 7.01 42.14 0.30 4.17 16 3 C -0.32 -9.68 6.13 -20.15 -0.12 -9.81 16 4 C 0.60 20.50 7.81 86.66 0.68 21.17 16 5 O -0.58 -22.14 14.48 -4.04 -0.06 -22.20 16 6 N -0.70 -24.00 5.18 -439.22 -2.27 -26.27 16 7 C 0.15 5.17 3.43 46.38 0.16 5.33 16 8 H 0.11 3.51 7.54 -2.39 -0.02 3.49 16 9 C -0.13 -4.65 6.55 31.78 0.21 -4.44 16 10 C 0.18 8.74 5.37 86.73 0.47 9.21 16 11 N -0.62 -32.02 3.39 -692.00 -2.35 -34.37 16 12 C -0.24 -13.74 10.27 84.03 0.86 -12.88 16 13 H 0.07 4.05 7.84 -2.91 -0.02 4.03 16 14 C -0.06 -3.30 5.48 84.86 0.46 -2.84 16 15 N -0.94 -56.06 10.36 21.65 0.22 -55.83 16 16 Si 0.97 46.49 29.56 68.60 2.03 48.52 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 20 C 0.12 5.33 6.93 86.85 0.60 5.93 16 21 C 0.08 2.19 11.50 85.65 0.99 3.18 16 22 N -0.31 -8.50 12.26 -56.27 -0.69 -9.19 16 23 N -0.35 -7.84 3.13 -309.21 -0.97 -8.81 16 24 C 0.14 1.99 3.67 45.72 0.17 2.16 16 25 C -0.12 -1.54 6.45 31.67 0.20 -1.34 16 26 C -0.12 -1.71 6.91 31.88 0.22 -1.49 16 27 C -0.12 -1.37 6.83 31.67 0.22 -1.16 16 28 C -0.13 -1.85 6.54 31.32 0.20 -1.65 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.08 6.52 -2.39 -0.02 2.07 16 31 H 0.10 1.12 7.07 -2.39 -0.02 1.11 16 32 H 0.40 13.41 7.62 -92.70 -0.71 12.70 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 34 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.02 1.09 7.30 -2.38 -0.02 1.08 16 36 H 0.01 0.38 7.61 -2.39 -0.02 0.36 16 37 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.20 5.00 7.50 -2.91 -0.02 4.97 16 41 H 0.14 1.14 6.67 -2.39 -0.02 1.13 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.95 8.04 -2.39 -0.02 0.93 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.05 1.02 7.84 -2.39 -0.02 1.00 16 49 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.17 389.38 2.44 -70.73 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.25 Total: 22.95 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.28 Total: 14.47 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -6.06 Total: -134.47 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.17 2.44 -70.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015965521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.699 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds