Wall clock time and date at job start Tue Mar 31 2020 18:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39862 * 125.90288 * 2 1 4 4 C 1.35324 * 107.92383 * 179.71569 * 3 2 1 5 5 N 1.34951 * 107.73902 * 0.42923 * 4 3 2 6 6 C 1.46505 * 126.03074 * 179.83969 * 5 4 3 7 7 C 1.52999 * 109.47020 * 124.71514 * 6 5 4 8 8 H 1.08998 * 109.47332 * 54.99518 * 7 6 5 9 9 C 1.53006 * 109.46790 * 294.99601 * 7 6 5 10 10 C 1.50699 * 109.47201 * 174.99741 * 7 6 5 11 11 O 1.21281 * 119.99943 * 14.66847 * 10 7 6 12 12 N 1.34771 * 119.99992 * 194.66932 * 10 7 6 13 13 C 1.47164 * 120.71286 * 5.46853 * 12 10 7 14 14 C 1.53890 * 108.02942 * 132.76080 * 13 12 10 15 15 H 1.08998 * 112.09073 * 181.91302 * 14 13 12 16 16 C 1.54540 * 107.82932 * 305.87099 * 14 13 12 17 17 C 1.55857 * 104.09738 * 89.27916 * 16 14 13 18 18 C 1.54551 * 104.99641 * 359.97438 * 17 16 14 19 19 H 1.08998 * 112.17828 * 146.41567 * 18 17 16 20 20 C 1.47167 * 120.70910 * 185.19593 * 12 10 7 21 21 N 1.48305 * 107.20961 * 58.36323 * 14 13 12 22 22 C 1.36936 * 128.07720 * 106.69920 * 21 14 13 23 23 H 1.08007 * 119.99710 * 14.95634 * 22 21 14 24 24 C 1.38808 * 120.00237 * 194.95379 * 22 21 14 25 25 N 1.31623 * 119.99964 * 8.97632 * 24 22 21 26 26 Si 1.86805 * 120.00051 * 188.98183 * 24 22 21 27 27 H 1.48499 * 109.47184 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46870 * 119.99687 * 26 24 22 29 29 H 1.48493 * 109.46916 * 239.99739 * 26 24 22 30 30 N 1.30840 * 125.89561 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.46989 * 270.00083 * 1 2 3 32 32 H 1.08997 * 109.47005 * 29.99617 * 1 2 3 33 33 H 1.08995 * 109.47653 * 150.00103 * 1 2 3 34 34 H 1.08001 * 126.03847 * 359.97438 * 3 2 1 35 35 H 1.07996 * 126.13304 * 180.26172 * 4 3 2 36 36 H 1.09004 * 109.46388 * 244.70930 * 6 5 4 37 37 H 1.08996 * 109.47415 * 4.70676 * 6 5 4 38 38 H 1.09004 * 109.46504 * 184.27486 * 9 7 6 39 39 H 1.09002 * 109.46832 * 304.26971 * 9 7 6 40 40 H 1.08998 * 109.47374 * 64.27624 * 9 7 6 41 41 H 1.09001 * 109.75112 * 252.39596 * 13 12 10 42 42 H 1.09003 * 109.74569 * 13.07482 * 13 12 10 43 43 H 1.08996 * 110.36756 * 207.91914 * 16 14 13 44 44 H 1.09008 * 110.36991 * 330.23052 * 16 14 13 45 45 H 1.09003 * 110.28759 * 241.09845 * 17 16 14 46 46 H 1.08998 * 110.29921 * 118.87647 * 17 16 14 47 47 H 1.08999 * 109.74639 * 346.86805 * 20 12 10 48 48 H 1.09000 * 109.75305 * 107.60395 * 20 12 10 49 49 H 0.96995 * 119.99880 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6143 0.7152 0.0064 5 7 3.6087 -0.6343 0.0007 6 6 4.7899 -1.5010 0.0012 7 6 4.7109 -2.4700 1.1825 8 1 3.7696 -3.0181 1.1406 9 6 4.7853 -1.6836 2.4930 10 6 5.8611 -3.4412 1.1135 11 8 6.8024 -3.2153 0.3828 12 7 5.8438 -4.5607 1.8636 13 6 4.6595 -4.9109 2.6639 14 6 4.3374 -6.3948 2.4137 15 1 3.4461 -6.7172 2.9520 16 6 4.2032 -6.5990 0.8877 17 6 5.6514 -6.9365 0.4210 18 6 6.5052 -6.9002 1.7088 19 1 7.3167 -7.6275 1.6851 20 6 7.0066 -5.4622 1.8953 21 7 5.5380 -7.1755 2.7990 22 6 5.7127 -7.9657 3.9036 23 1 4.8584 -8.2717 4.4893 24 6 6.9878 -8.3736 4.2705 25 7 8.0409 -7.8625 3.6687 26 14 7.2091 -9.6481 5.6182 27 1 5.8786 -10.0618 6.1317 28 1 7.9180 -10.8316 5.0686 29 1 8.0068 -9.0636 6.7259 30 7 2.2741 -1.0599 0.0005 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 1.9924 2.1597 -0.0004 35 1 4.4892 1.3483 0.0120 36 1 4.8263 -2.0659 -0.9303 37 1 5.6884 -0.8906 0.0913 38 1 4.8055 -2.3783 3.3328 39 1 5.6907 -1.0767 2.5015 40 1 3.9128 -1.0359 2.5781 41 1 4.8699 -4.7530 3.7217 42 1 3.8142 -4.2933 2.3604 43 1 3.5292 -7.4284 0.6738 44 1 3.8445 -5.6857 0.4127 45 1 6.0039 -6.1880 -0.2887 46 1 5.6826 -7.9296 -0.0270 47 1 7.6938 -5.2053 1.0891 48 1 7.5149 -5.3742 2.8555 49 1 8.9319 -8.1473 3.9253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029323315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:40 Heat of formation + Delta-G solvation = 77.004738 kcal Electronic energy + Delta-G solvation = -29957.842612 eV Core-core repulsion = 26115.591289 eV Total energy + Delta-G solvation = -3842.251323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32353 -40.18861 -38.07724 -35.24275 -33.86814 -32.56101 -32.24548 -30.62068 -30.01679 -29.26801 -28.85228 -26.41255 -25.83860 -24.12779 -23.84051 -22.44822 -21.20304 -19.97879 -19.74239 -19.28764 -18.43395 -17.59644 -16.62610 -15.91307 -15.85441 -15.67042 -14.83187 -14.69503 -14.47425 -14.17813 -13.87296 -13.66534 -13.56539 -13.16222 -13.08317 -12.92623 -12.84721 -12.79463 -12.48833 -12.20376 -12.07450 -11.86209 -11.74148 -11.60941 -11.37645 -11.32470 -11.00173 -10.89601 -10.82624 -10.55860 -10.31301 -10.05350 -9.90469 -9.72266 -9.58090 -9.30927 -9.26169 -8.82623 -8.62126 -8.09957 -6.88381 -5.87695 -3.23407 1.82230 2.38802 2.69597 2.98520 3.32699 3.39437 3.41366 3.54107 4.33482 4.38326 4.61441 4.67642 4.78180 4.86927 5.06491 5.08307 5.23844 5.29475 5.35045 5.45170 5.51162 5.52792 5.55630 5.61883 5.68488 5.70249 5.73375 5.73575 5.79331 5.88856 5.92626 5.98739 6.08643 6.20427 6.30756 6.36359 6.50140 6.59964 6.60768 6.67445 6.76637 6.84092 6.93330 6.94277 7.25975 7.46934 7.66236 7.67822 8.01396 8.10341 8.58771 9.01968 9.64088 10.40414 11.25156 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.002936 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.661919 B = 9535.890540 C = 9834.213045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.064 3.936 3 C -0.277 4.277 4 C 0.057 3.943 5 N -0.364 5.364 6 C 0.155 3.845 7 C -0.122 4.122 8 H 0.107 0.893 9 C -0.138 4.138 10 C 0.515 3.485 11 O -0.562 6.562 12 N -0.584 5.584 13 C 0.093 3.907 14 C 0.133 3.867 15 H 0.078 0.922 16 C -0.124 4.124 17 C -0.136 4.136 18 C 0.168 3.832 19 H 0.120 0.880 20 C 0.111 3.889 21 N -0.584 5.584 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.003 4.003 25 N -0.913 5.913 26 Si 0.912 3.088 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 N -0.291 5.291 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 15.340 -6.141 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.307 4.307 4 C -0.090 4.090 5 N -0.146 5.146 6 C 0.033 3.967 7 C -0.144 4.144 8 H 0.125 0.875 9 C -0.196 4.196 10 C 0.302 3.698 11 O -0.443 6.443 12 N -0.315 5.315 13 C -0.033 4.033 14 C 0.025 3.975 15 H 0.096 0.904 16 C -0.163 4.163 17 C -0.176 4.176 18 C 0.060 3.940 19 H 0.137 0.863 20 C -0.011 4.011 21 N -0.305 5.305 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.200 4.200 25 N -0.559 5.559 26 Si 0.743 3.257 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 N -0.115 5.115 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.188 0.812 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.681 13.909 -6.327 18.089 hybrid contribution 0.264 0.367 0.818 0.935 sum -9.417 14.277 -5.509 17.968 Atomic orbital electron populations 1.20143 0.86933 1.03064 1.02813 1.22347 0.96894 0.90889 1.00049 1.21335 0.91651 0.99636 1.18071 1.22565 0.99668 0.85061 1.01657 1.48693 1.05362 1.04626 1.55893 1.21546 0.83273 0.92483 0.99380 1.21527 1.00069 0.96332 0.96518 0.87488 1.21710 1.02224 1.00155 0.95522 1.20119 0.87403 0.82020 0.80261 1.90649 1.37040 1.76190 1.40385 1.48164 1.17315 1.21807 1.44170 1.22630 0.86557 0.98761 0.95320 1.21928 0.92436 0.89341 0.93828 0.90404 1.22746 0.97201 0.99625 0.96745 1.22924 0.95830 0.99730 0.99068 1.21817 0.93706 0.93829 0.84619 0.86260 1.22362 0.85999 0.90462 1.02323 1.45172 1.10402 1.52232 1.22666 1.19043 0.92473 1.21940 1.01957 0.90512 1.24840 0.95333 1.00565 0.99306 1.69841 0.97412 1.44497 1.44160 0.86054 0.77637 0.80981 0.81075 1.20474 1.21661 1.21797 1.77314 0.86522 1.22837 1.24805 0.90685 0.90705 0.91035 0.83858 0.81155 0.89151 0.87729 0.91283 0.92169 0.91933 0.91596 0.91464 0.92567 0.92936 0.92855 0.92847 0.91222 0.90241 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 36.00 0.38 -0.19 16 2 C 0.06 0.73 7.22 -82.41 -0.59 0.13 16 3 C -0.28 -2.77 10.74 -40.01 -0.43 -3.20 16 4 C 0.06 0.57 11.45 -17.22 -0.20 0.38 16 5 N -0.36 -4.43 3.21 -61.36 -0.20 -4.63 16 6 C 0.15 1.91 5.22 -4.04 -0.02 1.89 16 7 C -0.12 -1.66 1.97 -91.77 -0.18 -1.84 16 8 H 0.11 1.50 6.45 -51.93 -0.33 1.17 16 9 C -0.14 -1.71 8.86 37.16 0.33 -1.38 16 10 C 0.52 8.88 6.90 -10.99 -0.08 8.81 16 11 O -0.56 -11.16 15.55 5.56 0.09 -11.07 16 12 N -0.58 -10.77 2.27 -171.81 -0.39 -11.16 16 13 C 0.09 1.59 4.70 -3.22 -0.02 1.57 16 14 C 0.13 2.53 4.27 -65.66 -0.28 2.25 16 15 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 16 C -0.12 -2.18 6.31 -24.40 -0.15 -2.33 16 17 C -0.14 -2.65 6.22 -24.39 -0.15 -2.80 16 18 C 0.17 3.76 3.12 -65.89 -0.21 3.56 16 19 H 0.12 3.05 6.34 -51.93 -0.33 2.72 16 20 C 0.11 2.40 5.80 -3.45 -0.02 2.38 16 21 N -0.58 -13.60 2.81 -152.86 -0.43 -14.03 16 22 C -0.23 -5.82 10.37 -15.06 -0.16 -5.98 16 23 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 24 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 25 N -0.91 -24.81 10.42 55.49 0.58 -24.23 16 26 Si 0.91 21.04 29.56 -169.99 -5.03 16.02 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 N -0.29 -3.94 12.34 33.67 0.42 -3.52 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.17 8.02 -51.93 -0.42 0.76 16 38 H 0.07 0.89 7.06 -51.93 -0.37 0.52 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.07 0.98 5.62 -51.93 -0.29 0.68 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.86 7.84 -51.92 -0.41 0.45 16 45 H 0.05 1.02 7.83 -51.93 -0.41 0.62 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.52 7.08 -51.93 -0.37 1.15 16 48 H 0.08 1.95 7.84 -51.93 -0.41 1.54 16 49 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -29.95 383.99 -8.98 -38.93 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.93 Total: 4.83 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.87 Total: 3.07 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.02 Total: -57.56 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.95 -8.98 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029323315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.932 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds