Wall clock time and date at job start Tue Mar 31 2020 18:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39862 * 125.90288 * 2 1 4 4 C 1.35324 * 107.92383 * 179.71569 * 3 2 1 5 5 N 1.34951 * 107.73902 * 0.42923 * 4 3 2 6 6 C 1.46505 * 126.03074 * 179.83969 * 5 4 3 7 7 C 1.52999 * 109.47020 * 124.71514 * 6 5 4 8 8 H 1.08998 * 109.47332 * 54.99518 * 7 6 5 9 9 C 1.53006 * 109.46790 * 294.99601 * 7 6 5 10 10 C 1.50699 * 109.47201 * 174.99741 * 7 6 5 11 11 O 1.21281 * 119.99943 * 14.66847 * 10 7 6 12 12 N 1.34771 * 119.99992 * 194.66932 * 10 7 6 13 13 C 1.47164 * 120.71286 * 5.46853 * 12 10 7 14 14 C 1.53890 * 108.02942 * 132.76080 * 13 12 10 15 15 H 1.08998 * 112.09073 * 181.91302 * 14 13 12 16 16 C 1.54540 * 107.82932 * 305.87099 * 14 13 12 17 17 C 1.55857 * 104.09738 * 89.27916 * 16 14 13 18 18 C 1.54551 * 104.99641 * 359.97438 * 17 16 14 19 19 H 1.08998 * 112.17828 * 146.41567 * 18 17 16 20 20 C 1.47167 * 120.70910 * 185.19593 * 12 10 7 21 21 N 1.48305 * 107.20961 * 58.36323 * 14 13 12 22 22 C 1.36936 * 128.07720 * 106.69920 * 21 14 13 23 23 H 1.08007 * 119.99710 * 14.95634 * 22 21 14 24 24 C 1.38808 * 120.00237 * 194.95379 * 22 21 14 25 25 N 1.31623 * 119.99964 * 8.97632 * 24 22 21 26 26 Si 1.86805 * 120.00051 * 188.98183 * 24 22 21 27 27 H 1.48499 * 109.47184 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46870 * 119.99687 * 26 24 22 29 29 H 1.48493 * 109.46916 * 239.99739 * 26 24 22 30 30 N 1.30840 * 125.89561 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.46989 * 270.00083 * 1 2 3 32 32 H 1.08997 * 109.47005 * 29.99617 * 1 2 3 33 33 H 1.08995 * 109.47653 * 150.00103 * 1 2 3 34 34 H 1.08001 * 126.03847 * 359.97438 * 3 2 1 35 35 H 1.07996 * 126.13304 * 180.26172 * 4 3 2 36 36 H 1.09004 * 109.46388 * 244.70930 * 6 5 4 37 37 H 1.08996 * 109.47415 * 4.70676 * 6 5 4 38 38 H 1.09004 * 109.46504 * 184.27486 * 9 7 6 39 39 H 1.09002 * 109.46832 * 304.26971 * 9 7 6 40 40 H 1.08998 * 109.47374 * 64.27624 * 9 7 6 41 41 H 1.09001 * 109.75112 * 252.39596 * 13 12 10 42 42 H 1.09003 * 109.74569 * 13.07482 * 13 12 10 43 43 H 1.08996 * 110.36756 * 207.91914 * 16 14 13 44 44 H 1.09008 * 110.36991 * 330.23052 * 16 14 13 45 45 H 1.09003 * 110.28759 * 241.09845 * 17 16 14 46 46 H 1.08998 * 110.29921 * 118.87647 * 17 16 14 47 47 H 1.08999 * 109.74639 * 346.86805 * 20 12 10 48 48 H 1.09000 * 109.75305 * 107.60395 * 20 12 10 49 49 H 0.96995 * 119.99880 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6143 0.7152 0.0064 5 7 3.6087 -0.6343 0.0007 6 6 4.7899 -1.5010 0.0012 7 6 4.7109 -2.4700 1.1825 8 1 3.7696 -3.0181 1.1406 9 6 4.7853 -1.6836 2.4930 10 6 5.8611 -3.4412 1.1135 11 8 6.8024 -3.2153 0.3828 12 7 5.8438 -4.5607 1.8636 13 6 4.6595 -4.9109 2.6639 14 6 4.3374 -6.3948 2.4137 15 1 3.4461 -6.7172 2.9520 16 6 4.2032 -6.5990 0.8877 17 6 5.6514 -6.9365 0.4210 18 6 6.5052 -6.9002 1.7088 19 1 7.3167 -7.6275 1.6851 20 6 7.0066 -5.4622 1.8953 21 7 5.5380 -7.1755 2.7990 22 6 5.7127 -7.9657 3.9036 23 1 4.8584 -8.2717 4.4893 24 6 6.9878 -8.3736 4.2705 25 7 8.0409 -7.8625 3.6687 26 14 7.2091 -9.6481 5.6182 27 1 5.8786 -10.0618 6.1317 28 1 7.9180 -10.8316 5.0686 29 1 8.0068 -9.0636 6.7259 30 7 2.2741 -1.0599 0.0005 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 1.9924 2.1597 -0.0004 35 1 4.4892 1.3483 0.0120 36 1 4.8263 -2.0659 -0.9303 37 1 5.6884 -0.8906 0.0913 38 1 4.8055 -2.3783 3.3328 39 1 5.6907 -1.0767 2.5015 40 1 3.9128 -1.0359 2.5781 41 1 4.8699 -4.7530 3.7217 42 1 3.8142 -4.2933 2.3604 43 1 3.5292 -7.4284 0.6738 44 1 3.8445 -5.6857 0.4127 45 1 6.0039 -6.1880 -0.2887 46 1 5.6826 -7.9296 -0.0270 47 1 7.6938 -5.2053 1.0891 48 1 7.5149 -5.3742 2.8555 49 1 8.9319 -8.1473 3.9253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029323315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:39 Heat of formation + Delta-G solvation = 61.263364 kcal Electronic energy + Delta-G solvation = -29958.525209 eV Core-core repulsion = 26115.591289 eV Total energy + Delta-G solvation = -3842.933920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18878 -41.62763 -39.59524 -36.33256 -35.48200 -34.19345 -33.35507 -32.16310 -31.05460 -30.82789 -29.66936 -27.96523 -26.82516 -25.71298 -25.51558 -23.71322 -21.99249 -21.34098 -21.19397 -20.53574 -19.91661 -18.85655 -18.06517 -17.21559 -17.14794 -17.00946 -16.50264 -16.11378 -15.65690 -15.49689 -14.96695 -14.78965 -14.75574 -14.69805 -14.46275 -14.16996 -13.85214 -13.66831 -13.57866 -13.43669 -13.26458 -13.23895 -13.12430 -12.90478 -12.82840 -12.77442 -12.61729 -12.38034 -12.21021 -11.95562 -11.80931 -11.54146 -11.49838 -11.38176 -11.17376 -10.86235 -10.61898 -10.13121 -9.75113 -9.41473 -8.72881 -7.85992 -5.21879 1.02483 1.47310 1.49581 1.50977 1.58273 1.58802 1.95087 2.12801 2.49962 3.33422 3.39521 3.40898 3.49042 3.75278 3.95404 4.01775 4.04274 4.08065 4.12027 4.21524 4.30311 4.30966 4.40141 4.51225 4.54134 4.61523 4.64705 4.70991 4.81084 4.83037 4.88553 4.90397 4.95226 5.00104 5.02025 5.06009 5.08451 5.11944 5.13609 5.25023 5.32347 5.36443 5.52225 5.56122 5.81090 5.86384 6.16412 6.21503 6.55096 6.87876 7.05030 7.13955 7.71651 8.50306 9.25605 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.002936 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.661919 B = 9535.890540 C = 9834.213045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.056 3.944 3 C -0.283 4.283 4 C 0.055 3.945 5 N -0.375 5.375 6 C 0.161 3.839 7 C -0.107 4.107 8 H 0.108 0.892 9 C -0.130 4.130 10 C 0.517 3.483 11 O -0.588 6.588 12 N -0.587 5.587 13 C 0.101 3.899 14 C 0.127 3.873 15 H 0.093 0.907 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.165 3.835 19 H 0.081 0.919 20 C 0.129 3.871 21 N -0.603 5.603 22 C -0.229 4.229 23 H 0.082 0.918 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.971 3.029 27 H -0.267 1.267 28 H -0.297 1.297 29 H -0.298 1.298 30 N -0.333 5.333 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.167 0.833 35 H 0.201 0.799 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.042 0.958 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 17.252 -6.379 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C -0.312 4.312 4 C -0.090 4.090 5 N -0.157 5.157 6 C 0.039 3.961 7 C -0.129 4.129 8 H 0.126 0.874 9 C -0.188 4.188 10 C 0.305 3.695 11 O -0.470 6.470 12 N -0.318 5.318 13 C -0.023 4.023 14 C 0.019 3.981 15 H 0.111 0.889 16 C -0.151 4.151 17 C -0.167 4.167 18 C 0.058 3.942 19 H 0.099 0.901 20 C 0.005 3.995 21 N -0.325 5.325 22 C -0.358 4.358 23 H 0.099 0.901 24 C -0.251 4.251 25 N -0.586 5.586 26 Si 0.801 3.199 27 H -0.191 1.191 28 H -0.224 1.224 29 H -0.225 1.225 30 N -0.157 5.157 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.185 0.815 35 H 0.218 0.782 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.239 15.849 -6.573 21.076 hybrid contribution 1.004 -0.145 0.847 1.321 sum -11.236 15.704 -5.726 20.141 Atomic orbital electron populations 1.20258 0.85047 1.03901 1.03652 1.22954 0.98284 0.90954 0.98833 1.21700 0.91476 1.00478 1.17527 1.23156 1.01005 0.84464 1.00382 1.48633 1.04833 1.05260 1.56951 1.21400 0.84135 0.92519 0.98053 1.21413 0.97804 0.95712 0.97965 0.87367 1.21646 1.02879 0.99927 0.94299 1.20749 0.88013 0.81706 0.78984 1.90638 1.38452 1.76568 1.41307 1.48129 1.16776 1.21960 1.44893 1.22576 0.86949 0.98203 0.94588 1.22195 0.91310 0.89705 0.94859 0.88943 1.22680 0.95866 1.01071 0.95481 1.22793 0.96676 0.99903 0.97365 1.21631 0.93242 0.93158 0.86190 0.90142 1.21838 0.86898 0.91035 0.99744 1.45335 1.11911 1.52903 1.22324 1.19344 0.92507 1.21699 1.02279 0.90059 1.25532 0.95378 1.02582 1.01571 1.70031 0.97283 1.45732 1.45530 0.85125 0.77649 0.78571 0.78589 1.19139 1.22411 1.22500 1.77265 0.87275 1.24323 1.26799 0.89748 0.88631 0.91454 0.81528 0.78227 0.90325 0.86596 0.91904 0.91748 0.90966 0.92825 0.87922 0.91246 0.90996 0.92747 0.92792 0.92211 0.93994 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.45 71.24 0.74 -0.19 16 2 C 0.06 1.13 7.22 43.10 0.31 1.44 16 3 C -0.28 -4.79 10.74 21.99 0.24 -4.55 16 4 C 0.06 0.95 11.45 83.54 0.96 1.91 16 5 N -0.38 -8.28 3.21 -348.04 -1.12 -9.39 16 6 C 0.16 3.68 5.22 86.38 0.45 4.13 16 7 C -0.11 -2.69 1.97 -11.54 -0.02 -2.72 16 8 H 0.11 2.74 6.45 -2.39 -0.02 2.73 16 9 C -0.13 -2.91 8.86 71.98 0.64 -2.27 16 10 C 0.52 17.33 6.90 87.66 0.61 17.94 16 11 O -0.59 -23.14 15.55 -3.03 -0.05 -23.19 16 12 N -0.59 -21.44 2.27 -815.86 -1.85 -23.29 16 13 C 0.10 3.32 4.70 86.55 0.41 3.73 16 14 C 0.13 4.61 4.27 45.47 0.19 4.80 16 15 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 16 C -0.11 -3.69 6.31 32.11 0.20 -3.49 16 17 C -0.13 -4.93 6.22 32.11 0.20 -4.73 16 18 C 0.17 7.63 3.12 45.31 0.14 7.77 16 19 H 0.08 4.35 6.34 -2.39 -0.02 4.34 16 20 C 0.13 5.77 5.80 86.40 0.50 6.27 16 21 N -0.60 -28.25 2.81 -637.52 -1.79 -30.05 16 22 C -0.23 -11.91 10.37 84.03 0.87 -11.04 16 23 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 24 C -0.06 -3.03 5.42 84.86 0.46 -2.57 16 25 N -0.94 -53.18 10.42 21.65 0.23 -52.95 16 26 Si 0.97 44.10 29.56 68.60 2.03 46.13 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 29 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 30 N -0.33 -8.33 12.34 -47.39 -0.58 -8.92 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.12 2.36 8.02 -2.39 -0.02 2.34 16 38 H 0.06 1.50 7.06 -2.38 -0.02 1.48 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.52 7.87 -2.39 -0.02 1.50 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.10 2.67 5.62 -2.39 -0.01 2.66 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 2.11 7.84 -2.38 -0.02 2.10 16 45 H 0.05 2.06 7.83 -2.39 -0.02 2.04 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.06 2.73 7.08 -2.39 -0.02 2.72 16 48 H 0.04 2.17 7.84 -2.39 -0.02 2.15 16 49 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -66.49 383.99 4.69 -61.80 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.93 Total: 23.42 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 6.90 Total: 16.43 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -5.12 Total: -124.59 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.49 4.69 -61.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029323315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.067 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds