Wall clock time and date at job start Tue Mar 31 2020 18:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39872 * 125.89712 * 2 1 4 4 C 1.35312 * 107.91911 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.12452 * 180.02562 * 4 3 2 6 6 N 1.34943 * 107.74790 * 359.97438 * 4 3 2 7 7 C 1.46501 * 126.03893 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46593 * 90.00277 * 7 6 4 9 9 C 1.50704 * 109.47075 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99914 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99678 * 180.02562 * 9 8 7 12 12 C 1.47167 * 120.70351 * 180.02562 * 11 9 8 13 13 C 1.53893 * 108.03290 * 132.78267 * 12 11 9 14 14 H 1.08997 * 112.09750 * 181.90505 * 13 12 11 15 15 C 1.54549 * 107.82719 * 306.49713 * 13 12 11 16 16 C 1.54833 * 104.74067 * 88.94352 * 15 13 12 17 17 C 1.54542 * 104.74726 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.68423 * 146.80719 * 17 16 15 19 19 C 1.47159 * 120.71542 * 0.02562 * 11 9 8 20 20 N 1.48302 * 107.20468 * 58.35347 * 13 12 11 21 21 C 1.36935 * 128.07840 * 106.71316 * 20 13 12 22 22 H 1.07997 * 120.00382 * 206.63619 * 21 20 13 23 23 C 1.38813 * 120.00008 * 26.63190 * 21 20 13 24 24 N 1.31617 * 120.00262 * 195.70515 * 23 21 20 25 25 Si 1.86806 * 119.99979 * 15.70375 * 23 21 20 26 26 H 1.48507 * 109.46964 * 269.11182 * 25 23 21 27 27 H 1.48498 * 109.47005 * 29.10694 * 25 23 21 28 28 H 1.48497 * 109.47513 * 149.11122 * 25 23 21 29 29 N 1.30839 * 125.90031 * 180.29843 * 2 1 3 30 30 H 1.08996 * 109.47265 * 90.00475 * 1 2 3 31 31 H 1.08997 * 109.47110 * 210.00283 * 1 2 3 32 32 H 1.08997 * 109.47517 * 330.00072 * 1 2 3 33 33 H 1.08006 * 126.03816 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47435 * 269.97599 * 5 4 3 35 35 H 1.08999 * 109.47409 * 29.98176 * 5 4 3 36 36 H 1.09009 * 109.47077 * 149.97640 * 5 4 3 37 37 H 1.09002 * 109.47017 * 330.00895 * 7 6 4 38 38 H 1.08993 * 109.47660 * 210.00562 * 7 6 4 39 39 H 1.09002 * 109.46935 * 60.00567 * 8 7 6 40 40 H 1.08993 * 109.47350 * 300.00475 * 8 7 6 41 41 H 1.08997 * 109.75173 * 13.14790 * 12 11 9 42 42 H 1.09002 * 109.78828 * 252.43172 * 12 11 9 43 43 H 1.08991 * 110.36600 * 207.90895 * 15 13 12 44 44 H 1.09002 * 110.36435 * 330.22605 * 15 13 12 45 45 H 1.09005 * 110.30641 * 241.24783 * 16 15 13 46 46 H 1.09000 * 110.61160 * 118.91131 * 16 15 13 47 47 H 1.08999 * 109.74755 * 346.85424 * 19 11 9 48 48 H 1.09006 * 109.74997 * 107.58621 * 19 11 9 49 49 H 0.97004 * 119.99992 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5990 0.0013 6 7 3.6088 -0.6340 0.0015 7 6 4.7899 -1.5007 0.0018 8 6 5.2013 -1.8014 1.4445 9 6 6.4160 -2.6934 1.4450 10 8 6.9047 -3.0528 0.3949 11 7 6.9590 -3.0917 2.6124 12 6 8.1454 -3.9623 2.6310 13 6 9.1548 -3.3707 3.6308 14 1 10.0777 -3.9491 3.6725 15 6 9.3941 -1.8938 3.2435 16 6 8.3097 -1.1033 4.0158 17 6 7.5199 -2.1784 4.7959 18 1 7.1530 -1.8163 5.7563 19 6 6.3784 -2.6655 3.8957 20 7 8.4775 -3.3003 4.9482 21 6 8.6842 -4.0904 6.0474 22 1 7.8885 -4.2404 6.7620 23 6 9.9165 -4.6987 6.2431 24 7 10.0334 -5.6868 7.1046 25 14 11.4092 -4.1148 5.2835 26 1 11.5243 -4.8942 4.0247 27 1 11.2574 -2.6732 4.9610 28 1 12.6323 -4.3128 6.1019 29 7 2.2742 -1.0598 -0.0055 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9922 2.1599 -0.0004 34 1 5.1301 1.8119 -1.0261 35 1 4.6072 2.5331 0.5149 36 1 5.6508 1.0912 0.5159 37 1 5.6093 -0.9983 -0.5124 38 1 4.5564 -2.4334 -0.5113 39 1 4.3819 -2.3037 1.9587 40 1 5.4348 -0.8686 1.9577 41 1 8.5905 -3.9996 1.6368 42 1 7.8613 -4.9666 2.9454 43 1 10.3903 -1.5773 3.5524 44 1 9.2682 -1.7581 2.1693 45 1 7.6538 -0.5814 3.3190 46 1 8.7691 -0.3955 4.7058 47 1 5.6687 -1.8554 3.7278 48 1 5.8724 -3.5072 4.3687 49 1 10.8946 -6.1116 7.2416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029415143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:26 Heat of formation + Delta-G solvation = 80.092221 kcal Electronic energy + Delta-G solvation = -29565.272745 eV Core-core repulsion = 25723.155306 eV Total energy + Delta-G solvation = -3842.117440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.47754 -40.46469 -38.35055 -34.91951 -34.12428 -32.64399 -32.45950 -31.47656 -30.77885 -30.01262 -28.26552 -27.20112 -26.40314 -24.56959 -23.91300 -23.15054 -20.59176 -20.35142 -20.11574 -19.43461 -18.61479 -17.60325 -16.66189 -16.45081 -15.91387 -15.81377 -15.42986 -15.05973 -14.78189 -14.02987 -13.99080 -13.71003 -13.56993 -13.52629 -13.37597 -13.22395 -13.12379 -13.03124 -12.81761 -12.67706 -12.42426 -12.27252 -12.04387 -12.01764 -11.88555 -11.49383 -11.39433 -11.10986 -10.95133 -10.64718 -10.63648 -10.29787 -9.99037 -9.95904 -9.75073 -9.50185 -9.20735 -8.85896 -8.65208 -8.40583 -7.14899 -6.06345 -3.45552 1.68121 2.25914 2.60774 2.71571 3.20036 3.24226 3.37440 3.41347 4.30707 4.38147 4.40446 4.53340 4.57680 4.64450 4.77060 4.82872 5.08773 5.11843 5.14032 5.18732 5.30037 5.30820 5.35823 5.39051 5.40669 5.44117 5.48061 5.49305 5.53226 5.62129 5.67811 5.73279 5.76104 5.90026 6.03782 6.04877 6.09997 6.21963 6.25428 6.30142 6.32910 6.54031 6.54922 6.66541 6.83585 6.87311 7.53240 7.61852 7.65848 8.20847 8.27970 8.65171 9.52830 10.09150 11.09512 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.002794 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.221169 B =10020.021019 C =10185.259227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.069 3.931 3 C -0.276 4.276 4 C 0.086 3.914 5 C -0.095 4.095 6 N -0.367 5.367 7 C 0.150 3.850 8 C -0.155 4.155 9 C 0.516 3.484 10 O -0.557 6.557 11 N -0.588 5.588 12 C 0.103 3.897 13 C 0.120 3.880 14 H 0.084 0.916 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.137 3.863 18 H 0.090 0.910 19 C 0.093 3.907 20 N -0.595 5.595 21 C -0.241 4.241 22 H 0.092 0.908 23 C 0.027 3.973 24 N -0.908 5.908 25 Si 0.881 3.119 26 H -0.286 1.286 27 H -0.262 1.262 28 H -0.302 1.302 29 N -0.295 5.295 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 15.373 -13.019 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 C -0.305 4.305 4 C -0.041 4.041 5 C -0.154 4.154 6 N -0.149 5.149 7 C 0.028 3.972 8 C -0.196 4.196 9 C 0.303 3.697 10 O -0.437 6.437 11 N -0.319 5.319 12 C -0.021 4.021 13 C 0.013 3.987 14 H 0.101 0.899 15 C -0.169 4.169 16 C -0.163 4.163 17 C 0.029 3.971 18 H 0.108 0.892 19 C -0.032 4.032 20 N -0.317 5.317 21 C -0.368 4.368 22 H 0.110 0.890 23 C -0.172 4.172 24 N -0.551 5.551 25 Si 0.713 3.287 26 H -0.214 1.214 27 H -0.187 1.187 28 H -0.231 1.231 29 N -0.117 5.117 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.356 13.592 -13.313 22.686 hybrid contribution 0.962 0.988 -0.313 1.414 sum -11.394 14.579 -13.626 22.979 Atomic orbital electron populations 1.20153 0.86834 1.03206 1.02778 1.22318 0.96891 0.90861 0.99660 1.21089 0.90953 0.99655 1.18814 1.21140 0.97352 0.84746 1.00847 1.20491 0.93144 0.98282 1.03455 1.48623 1.05323 1.04037 1.56957 1.21388 0.83544 0.95590 0.96651 1.22017 0.97977 1.01247 0.98348 1.20156 0.84668 0.81162 0.83710 1.90679 1.63708 1.58367 1.30902 1.48041 1.29568 1.48796 1.05520 1.22366 0.85928 0.93444 1.00363 1.22236 0.95096 0.94771 0.86554 0.89886 1.22688 0.99050 0.96249 0.98924 1.22562 0.97634 0.97654 0.98419 1.21883 0.90498 0.88460 0.96295 0.89188 1.22495 0.96775 0.99670 0.84262 1.45421 1.43689 1.34057 1.08562 1.18601 0.97052 1.21504 0.99676 0.89044 1.25156 0.97260 0.97662 0.97145 1.69757 1.24985 1.22870 1.37464 0.86917 0.83268 0.80276 0.78275 1.21412 1.18655 1.23054 1.77357 0.86326 1.22685 1.25371 0.90726 0.90986 0.90543 0.83792 0.90142 0.89535 0.90930 0.88157 0.87884 0.88076 0.88532 0.90052 0.91084 0.91870 0.92148 0.92752 0.91963 0.90861 0.90967 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.45 36.01 0.38 -0.16 16 2 C 0.07 0.77 7.22 -82.40 -0.59 0.18 16 3 C -0.28 -2.79 10.65 -40.01 -0.43 -3.22 16 4 C 0.09 0.88 6.93 -82.27 -0.57 0.31 16 5 C -0.10 -0.66 9.90 36.01 0.36 -0.30 16 6 N -0.37 -4.38 3.61 -57.14 -0.21 -4.58 16 7 C 0.15 1.69 5.35 -4.04 -0.02 1.67 16 8 C -0.15 -1.76 4.40 -27.88 -0.12 -1.88 16 9 C 0.52 7.66 7.70 -10.98 -0.08 7.58 16 10 O -0.56 -9.79 15.45 5.56 0.09 -9.71 16 11 N -0.59 -9.37 2.25 -171.88 -0.39 -9.76 16 12 C 0.10 1.90 5.90 -3.21 -0.02 1.89 16 13 C 0.12 2.44 2.85 -65.66 -0.19 2.25 16 14 H 0.08 1.87 3.17 -51.93 -0.16 1.70 16 15 C -0.13 -2.27 5.99 -24.95 -0.15 -2.42 16 16 C -0.12 -1.90 6.21 -24.96 -0.15 -2.06 16 17 C 0.14 2.34 4.28 -65.97 -0.28 2.06 16 18 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 19 C 0.09 1.37 5.76 -3.52 -0.02 1.35 16 20 N -0.59 -13.02 2.52 -152.95 -0.38 -13.40 16 21 C -0.24 -6.37 10.76 -15.06 -0.16 -6.53 16 22 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 23 C 0.03 0.76 5.49 -17.43 -0.10 0.66 16 24 N -0.91 -27.03 13.97 55.49 0.78 -26.26 16 25 Si 0.88 21.45 24.67 -169.99 -4.19 17.25 16 26 H -0.29 -6.82 6.68 56.52 0.38 -6.45 16 27 H -0.26 -6.05 5.34 56.52 0.30 -5.75 16 28 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 29 N -0.30 -3.96 12.58 33.67 0.42 -3.54 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.49 7.72 -51.92 -0.40 0.09 16 37 H 0.10 1.04 7.62 -51.93 -0.40 0.64 16 38 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.10 1.17 8.06 -51.93 -0.42 0.75 16 40 H 0.10 0.95 7.59 -51.93 -0.39 0.56 16 41 H 0.08 1.48 7.11 -51.93 -0.37 1.11 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.06 1.14 6.82 -51.93 -0.35 0.79 16 44 H 0.06 0.98 7.84 -51.93 -0.41 0.58 16 45 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 0.84 6.09 -51.93 -0.32 0.53 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -32.47 379.64 -8.28 -40.75 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.96 Total: 2.15 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.16 Total: 1.37 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.22 Total: -57.54 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.19 Total: 17.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.47 -8.28 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029415143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.843 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds