Wall clock time and date at job start Tue Mar 31 2020 18:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39872 * 125.89712 * 2 1 4 4 C 1.35312 * 107.91911 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.12452 * 180.02562 * 4 3 2 6 6 N 1.34943 * 107.74790 * 359.97438 * 4 3 2 7 7 C 1.46501 * 126.03893 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46593 * 90.00277 * 7 6 4 9 9 C 1.50704 * 109.47075 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99914 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99678 * 180.02562 * 9 8 7 12 12 C 1.47167 * 120.70351 * 180.02562 * 11 9 8 13 13 C 1.53893 * 108.03290 * 132.78267 * 12 11 9 14 14 H 1.08997 * 112.09750 * 181.90505 * 13 12 11 15 15 C 1.54549 * 107.82719 * 306.49713 * 13 12 11 16 16 C 1.54833 * 104.74067 * 88.94352 * 15 13 12 17 17 C 1.54542 * 104.74726 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.68423 * 146.80719 * 17 16 15 19 19 C 1.47159 * 120.71542 * 0.02562 * 11 9 8 20 20 N 1.48302 * 107.20468 * 58.35347 * 13 12 11 21 21 C 1.36935 * 128.07840 * 106.71316 * 20 13 12 22 22 H 1.07997 * 120.00382 * 206.63619 * 21 20 13 23 23 C 1.38813 * 120.00008 * 26.63190 * 21 20 13 24 24 N 1.31617 * 120.00262 * 195.70515 * 23 21 20 25 25 Si 1.86806 * 119.99979 * 15.70375 * 23 21 20 26 26 H 1.48507 * 109.46964 * 269.11182 * 25 23 21 27 27 H 1.48498 * 109.47005 * 29.10694 * 25 23 21 28 28 H 1.48497 * 109.47513 * 149.11122 * 25 23 21 29 29 N 1.30839 * 125.90031 * 180.29843 * 2 1 3 30 30 H 1.08996 * 109.47265 * 90.00475 * 1 2 3 31 31 H 1.08997 * 109.47110 * 210.00283 * 1 2 3 32 32 H 1.08997 * 109.47517 * 330.00072 * 1 2 3 33 33 H 1.08006 * 126.03816 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47435 * 269.97599 * 5 4 3 35 35 H 1.08999 * 109.47409 * 29.98176 * 5 4 3 36 36 H 1.09009 * 109.47077 * 149.97640 * 5 4 3 37 37 H 1.09002 * 109.47017 * 330.00895 * 7 6 4 38 38 H 1.08993 * 109.47660 * 210.00562 * 7 6 4 39 39 H 1.09002 * 109.46935 * 60.00567 * 8 7 6 40 40 H 1.08993 * 109.47350 * 300.00475 * 8 7 6 41 41 H 1.08997 * 109.75173 * 13.14790 * 12 11 9 42 42 H 1.09002 * 109.78828 * 252.43172 * 12 11 9 43 43 H 1.08991 * 110.36600 * 207.90895 * 15 13 12 44 44 H 1.09002 * 110.36435 * 330.22605 * 15 13 12 45 45 H 1.09005 * 110.30641 * 241.24783 * 16 15 13 46 46 H 1.09000 * 110.61160 * 118.91131 * 16 15 13 47 47 H 1.08999 * 109.74755 * 346.85424 * 19 11 9 48 48 H 1.09006 * 109.74997 * 107.58621 * 19 11 9 49 49 H 0.97004 * 119.99992 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5990 0.0013 6 7 3.6088 -0.6340 0.0015 7 6 4.7899 -1.5007 0.0018 8 6 5.2013 -1.8014 1.4445 9 6 6.4160 -2.6934 1.4450 10 8 6.9047 -3.0528 0.3949 11 7 6.9590 -3.0917 2.6124 12 6 8.1454 -3.9623 2.6310 13 6 9.1548 -3.3707 3.6308 14 1 10.0777 -3.9491 3.6725 15 6 9.3941 -1.8938 3.2435 16 6 8.3097 -1.1033 4.0158 17 6 7.5199 -2.1784 4.7959 18 1 7.1530 -1.8163 5.7563 19 6 6.3784 -2.6655 3.8957 20 7 8.4775 -3.3003 4.9482 21 6 8.6842 -4.0904 6.0474 22 1 7.8885 -4.2404 6.7620 23 6 9.9165 -4.6987 6.2431 24 7 10.0334 -5.6868 7.1046 25 14 11.4092 -4.1148 5.2835 26 1 11.5243 -4.8942 4.0247 27 1 11.2574 -2.6732 4.9610 28 1 12.6323 -4.3128 6.1019 29 7 2.2742 -1.0598 -0.0055 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9922 2.1599 -0.0004 34 1 5.1301 1.8119 -1.0261 35 1 4.6072 2.5331 0.5149 36 1 5.6508 1.0912 0.5159 37 1 5.6093 -0.9983 -0.5124 38 1 4.5564 -2.4334 -0.5113 39 1 4.3819 -2.3037 1.9587 40 1 5.4348 -0.8686 1.9577 41 1 8.5905 -3.9996 1.6368 42 1 7.8613 -4.9666 2.9454 43 1 10.3903 -1.5773 3.5524 44 1 9.2682 -1.7581 2.1693 45 1 7.6538 -0.5814 3.3190 46 1 8.7691 -0.3955 4.7058 47 1 5.6687 -1.8554 3.7278 48 1 5.8724 -3.5072 4.3687 49 1 10.8946 -6.1116 7.2416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029415143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:25 Heat of formation + Delta-G solvation = 60.147059 kcal Electronic energy + Delta-G solvation = -29566.137632 eV Core-core repulsion = 25723.155306 eV Total energy + Delta-G solvation = -3842.982327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.27024 -41.77579 -39.69179 -35.77401 -35.62001 -34.32747 -33.37624 -32.67343 -31.74725 -31.69011 -29.14419 -27.88676 -27.69570 -25.82883 -25.51431 -24.34977 -21.87042 -21.45923 -21.30397 -20.24235 -20.04258 -18.85156 -18.23615 -17.67448 -17.13275 -16.98956 -16.70137 -16.10197 -15.97963 -15.34640 -15.14904 -14.95490 -14.81816 -14.70001 -14.42459 -14.24631 -14.07150 -13.97331 -13.87506 -13.64283 -13.63577 -13.35681 -13.17927 -13.04293 -12.84425 -12.79671 -12.64976 -12.51141 -12.32613 -12.21979 -11.81385 -11.60894 -11.48065 -11.39741 -11.28596 -11.06062 -10.69753 -10.00863 -9.89789 -9.40710 -8.93745 -8.19250 -5.52532 0.91742 1.25585 1.36815 1.43328 1.47064 1.53659 1.87504 2.03599 2.38487 2.98116 3.19132 3.41423 3.57718 3.66198 3.79681 3.84564 3.92348 3.98647 4.02913 4.10858 4.19396 4.24837 4.27735 4.40391 4.54170 4.56362 4.58457 4.60591 4.68144 4.74668 4.76098 4.82106 4.83953 4.85838 4.86562 4.98526 5.00109 5.00441 5.10036 5.14693 5.21310 5.33723 5.38404 5.47571 5.70726 5.82506 6.11373 6.15368 6.43200 6.68201 6.84346 7.06456 7.47480 8.16060 9.00874 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.002794 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.221169 B =10020.021019 C =10185.259227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.060 3.940 3 C -0.287 4.287 4 C 0.085 3.915 5 C -0.094 4.094 6 N -0.378 5.378 7 C 0.154 3.846 8 C -0.140 4.140 9 C 0.521 3.479 10 O -0.583 6.583 11 N -0.590 5.590 12 C 0.112 3.888 13 C 0.111 3.889 14 H 0.058 0.942 15 C -0.125 4.125 16 C -0.113 4.113 17 C 0.129 3.871 18 H 0.096 0.904 19 C 0.100 3.900 20 N -0.615 5.615 21 C -0.218 4.218 22 H 0.061 0.939 23 C -0.035 4.035 24 N -0.961 5.961 25 Si 0.940 3.060 26 H -0.285 1.285 27 H -0.240 1.240 28 H -0.316 1.316 29 N -0.343 5.343 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.069 0.931 47 H 0.119 0.881 48 H 0.055 0.945 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 19.299 -14.763 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.316 4.316 4 C -0.042 4.042 5 C -0.152 4.152 6 N -0.160 5.160 7 C 0.032 3.968 8 C -0.181 4.181 9 C 0.310 3.690 10 O -0.464 6.464 11 N -0.322 5.322 12 C -0.013 4.013 13 C 0.004 3.996 14 H 0.076 0.924 15 C -0.163 4.163 16 C -0.152 4.152 17 C 0.023 3.977 18 H 0.114 0.886 19 C -0.023 4.023 20 N -0.338 5.338 21 C -0.347 4.347 22 H 0.079 0.921 23 C -0.230 4.230 24 N -0.607 5.607 25 Si 0.771 3.229 26 H -0.213 1.213 27 H -0.164 1.164 28 H -0.245 1.245 29 N -0.166 5.166 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.184 0.816 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.136 0.864 48 H 0.073 0.927 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.534 17.579 -15.100 26.837 hybrid contribution 1.138 -0.223 0.163 1.172 sum -12.395 17.356 -14.937 26.038 Atomic orbital electron populations 1.20270 0.84939 1.04023 1.03647 1.22932 0.98322 0.90905 0.98444 1.21458 0.90928 1.00444 1.18746 1.21750 0.98715 0.84294 0.99485 1.20629 0.91774 0.98375 1.04461 1.48642 1.04858 1.04733 1.57779 1.21285 0.83891 0.95126 0.96450 1.21933 0.95847 1.01418 0.98863 1.20680 0.84972 0.80728 0.82618 1.90677 1.64642 1.59275 1.31835 1.48047 1.28975 1.48659 1.06482 1.22027 0.86796 0.92727 0.99791 1.22332 0.94353 0.96782 0.86086 0.92420 1.22639 0.99561 0.93966 1.00182 1.22533 0.97145 0.96786 0.98687 1.22182 0.90290 0.87642 0.97621 0.88596 1.22462 0.96317 1.00443 0.83123 1.45478 1.44898 1.35410 1.08064 1.18495 0.95746 1.20637 0.99812 0.92089 1.25771 1.00072 0.98266 0.98878 1.69900 1.25238 1.25018 1.40568 0.85952 0.79348 0.80918 0.76634 1.21291 1.16382 1.24541 1.77312 0.87371 1.24301 1.27574 0.89756 0.91429 0.88444 0.81590 0.89175 0.87680 0.90352 0.87002 0.89815 0.87956 0.85717 0.89728 0.93679 0.92436 0.90529 0.89058 0.91210 0.86358 0.92658 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.45 71.24 0.74 -0.19 16 2 C 0.06 1.22 7.22 43.10 0.31 1.53 16 3 C -0.29 -4.96 10.65 21.99 0.23 -4.72 16 4 C 0.08 1.45 6.93 41.41 0.29 1.74 16 5 C -0.09 -0.89 9.90 71.24 0.71 -0.18 16 6 N -0.38 -8.12 3.61 -334.70 -1.21 -9.33 16 7 C 0.15 3.11 5.35 86.38 0.46 3.58 16 8 C -0.14 -2.67 4.40 29.85 0.13 -2.54 16 9 C 0.52 13.95 7.70 87.66 0.68 14.63 16 10 O -0.58 -19.31 15.45 -3.01 -0.05 -19.35 16 11 N -0.59 -17.36 2.25 -816.09 -1.84 -19.20 16 12 C 0.11 4.04 5.90 86.55 0.51 4.55 16 13 C 0.11 4.36 2.85 45.47 0.13 4.49 16 14 H 0.06 2.57 3.17 -2.39 -0.01 2.56 16 15 C -0.12 -3.93 5.99 31.75 0.19 -3.74 16 16 C -0.11 -2.95 6.21 31.74 0.20 -2.76 16 17 C 0.13 4.06 4.28 45.28 0.19 4.25 16 18 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 19 C 0.10 2.66 5.76 86.36 0.50 3.16 16 20 N -0.62 -26.50 2.52 -637.80 -1.60 -28.11 16 21 C -0.22 -11.79 10.76 84.03 0.90 -10.88 16 22 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 23 C -0.04 -2.02 5.49 84.86 0.47 -1.55 16 24 N -0.96 -59.78 13.97 21.65 0.30 -59.48 16 25 Si 0.94 45.49 24.67 68.60 1.69 47.19 16 26 H -0.28 -13.49 6.68 99.48 0.66 -12.83 16 27 H -0.24 -10.57 5.34 99.48 0.53 -10.04 16 28 H -0.32 -15.80 7.11 99.48 0.71 -15.09 16 29 N -0.34 -8.75 12.58 -47.38 -0.60 -9.35 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.67 7.72 -2.38 -0.02 0.65 16 37 H 0.11 1.97 7.62 -2.39 -0.02 1.95 16 38 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 39 H 0.10 2.02 8.06 -2.39 -0.02 2.00 16 40 H 0.12 1.72 7.59 -2.39 -0.02 1.71 16 41 H 0.08 3.00 7.11 -2.39 -0.02 2.98 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.88 6.82 -2.39 -0.02 1.87 16 44 H 0.08 2.18 7.84 -2.39 -0.02 2.16 16 45 H 0.09 1.77 7.83 -2.38 -0.02 1.75 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.12 2.11 6.09 -2.39 -0.01 2.10 16 48 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 49 H 0.26 15.57 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.19 379.64 4.06 -70.12 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.72 Total: 16.13 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.64 Total: 11.37 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -4.94 Total: -125.45 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.69 Total: 47.19 kcal Total: -74.19 4.06 -70.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029415143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.271 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds