Wall clock time and date at job start Tue Mar 31 2020 17:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30441 * 125.98967 * 2 1 4 4 N 1.39933 * 108.89863 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.75388 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47078 * 255.02056 * 5 4 3 7 7 C 1.53002 * 109.47343 * 15.02252 * 5 4 3 8 8 C 1.53001 * 109.47037 * 135.01974 * 5 4 3 9 9 C 1.34260 * 108.48863 * 359.97438 * 4 3 2 10 10 C 1.38038 * 107.42057 * 0.02562 * 9 4 3 11 11 C 1.47429 * 126.41583 * 179.97438 * 10 9 4 12 12 O 1.21605 * 119.99934 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99864 * 0.03739 * 11 10 9 14 14 C 1.47862 * 126.94508 * 0.02824 * 13 11 10 15 15 C 1.56018 * 105.10269 * 181.97515 * 14 13 11 16 16 H 1.09006 * 116.24589 * 159.68597 * 15 14 13 17 17 C 1.57083 * 99.60729 * 32.80676 * 15 14 13 18 18 C 1.49291 * 126.94187 * 179.71051 * 13 11 10 19 19 H 1.09001 * 116.15303 * 15.86286 * 18 13 11 20 20 C 1.55487 * 104.35408 * 246.78487 * 18 13 11 21 21 N 1.47870 * 105.16638 * 288.90294 * 20 18 13 22 22 C 1.36946 * 126.94279 * 181.91908 * 21 20 18 23 23 H 1.07997 * 119.99604 * 173.66952 * 22 21 20 24 24 C 1.38816 * 119.99877 * 353.67586 * 22 21 20 25 25 N 1.31619 * 119.99899 * 6.41132 * 24 22 21 26 26 Si 1.86790 * 119.99876 * 186.41625 * 24 22 21 27 27 H 1.48501 * 109.47656 * 94.98139 * 26 24 22 28 28 H 1.48500 * 109.47189 * 214.98164 * 26 24 22 29 29 H 1.48504 * 109.47383 * 334.97966 * 26 24 22 30 30 H 1.08997 * 109.47112 * 90.02732 * 1 2 3 31 31 H 1.08997 * 109.47389 * 210.02487 * 1 2 3 32 32 H 1.08997 * 109.47069 * 330.02789 * 1 2 3 33 33 H 1.08989 * 109.47280 * 60.00034 * 6 5 4 34 34 H 1.09002 * 109.46780 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47266 * 299.99900 * 6 5 4 36 36 H 1.08999 * 109.47338 * 59.99911 * 7 5 4 37 37 H 1.09002 * 109.47228 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.46817 * 299.99729 * 7 5 4 39 39 H 1.08999 * 109.47107 * 60.00223 * 8 5 4 40 40 H 1.09002 * 109.47300 * 180.02562 * 8 5 4 41 41 H 1.08999 * 109.47211 * 299.99824 * 8 5 4 42 42 H 1.07999 * 126.28560 * 180.02562 * 9 4 3 43 43 H 1.08996 * 110.31729 * 300.88682 * 14 13 11 44 44 H 1.09006 * 110.31577 * 63.07014 * 14 13 11 45 45 H 1.08999 * 112.36278 * 64.27490 * 17 15 14 46 46 H 1.09001 * 112.36959 * 191.71004 * 17 15 14 47 47 H 1.08995 * 110.34986 * 169.94482 * 20 18 13 48 48 H 1.08998 * 110.21580 * 47.79800 * 20 18 13 49 49 H 0.97003 * 119.99904 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7787 1.5290 0.0003 6 6 5.4106 1.5389 -1.3931 7 6 4.3437 2.9477 0.3731 8 6 5.8012 1.0245 1.0205 9 6 3.6438 -0.6980 0.0015 10 6 2.3373 -1.1433 0.0009 11 6 1.8915 -2.5486 0.0011 12 8 0.7039 -2.8097 0.0000 13 7 2.8004 -3.5438 0.0026 14 6 4.2723 -3.4031 0.0048 15 6 4.8202 -4.8630 -0.0461 16 1 5.8474 -4.9806 -0.3916 17 6 3.6920 -5.5367 -0.9068 18 6 2.5244 -5.0110 0.0089 19 1 1.5099 -5.3101 -0.2547 20 6 3.0402 -5.4942 1.3939 21 7 4.5142 -5.4137 1.3073 22 6 5.4162 -5.7717 2.2735 23 1 6.4738 -5.7625 2.0549 24 6 4.9711 -6.1466 3.5338 25 7 3.6820 -6.2801 3.7637 26 14 6.2016 -6.4614 4.9034 27 1 6.3641 -5.2291 5.7160 28 1 5.7085 -7.5632 5.7684 29 1 7.5107 -6.8424 4.3148 30 1 -0.3633 -0.0005 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.6823 1.8983 -2.1198 34 1 6.2797 2.1969 -1.3932 35 1 5.7206 0.5282 -1.6587 36 1 3.8934 2.9407 1.3657 37 1 5.2123 3.6061 0.3724 38 1 3.6152 3.3071 -0.3538 39 1 6.1112 0.0138 0.7549 40 1 6.6697 1.6830 1.0206 41 1 5.3509 1.0174 2.0131 42 1 4.5297 -1.3158 0.0025 43 1 4.6005 -2.8449 -0.8720 44 1 4.6036 -2.9061 0.9166 45 1 3.6444 -5.1322 -1.9179 46 1 3.7621 -6.6244 -0.9045 47 1 2.7275 -6.5221 1.5772 48 1 2.6710 -4.8390 2.1829 49 1 3.3710 -6.5417 4.6445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032400490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:18 Heat of formation + Delta-G solvation = 100.479437 kcal Electronic energy + Delta-G solvation = -30153.968405 eV Core-core repulsion = 26312.735022 eV Total energy + Delta-G solvation = -3841.233384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47658 -39.82778 -37.70804 -36.74862 -33.67578 -32.14308 -31.62265 -30.19538 -28.79038 -28.58639 -27.78344 -27.73942 -27.29179 -25.29612 -24.06514 -22.43347 -21.19831 -20.31022 -19.71588 -19.22091 -18.28277 -17.23807 -16.48696 -16.01545 -15.69730 -15.48425 -14.89402 -14.50673 -14.31719 -14.27386 -13.97960 -13.84593 -13.38120 -13.03535 -12.90313 -12.85786 -12.53849 -12.42478 -12.33702 -12.09906 -12.02088 -11.87773 -11.86142 -11.65820 -11.40276 -11.39165 -11.31736 -11.01606 -10.88414 -10.80764 -10.66054 -10.50971 -10.22055 -10.07970 -9.65573 -9.31178 -9.18245 -8.69106 -8.50092 -7.90183 -6.92666 -5.79204 -3.13140 1.71451 2.30518 2.39444 3.35211 3.39914 3.43315 3.52416 3.90138 4.13233 4.40090 4.42903 4.52999 4.68943 4.76577 4.96369 5.13614 5.14709 5.18281 5.26574 5.33122 5.33663 5.37940 5.44482 5.47632 5.51275 5.55429 5.60967 5.64908 5.74042 5.78515 5.84581 5.85148 5.87347 5.89045 6.08039 6.13702 6.20123 6.31935 6.43248 6.49869 6.59030 6.70525 6.76407 6.97039 7.40746 7.53945 7.72457 7.75827 8.08845 8.21335 8.79246 9.08344 9.69660 10.39495 11.33034 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.004037 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.505442 B = 6934.033295 C = 8012.073435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.126 3.874 3 N -0.305 5.305 4 N -0.353 5.353 5 C 0.178 3.822 6 C -0.160 4.160 7 C -0.142 4.142 8 C -0.164 4.164 9 C 0.092 3.908 10 C -0.278 4.278 11 C 0.607 3.393 12 O -0.557 6.557 13 N -0.604 5.604 14 C 0.079 3.921 15 C 0.140 3.860 16 H 0.106 0.894 17 C -0.151 4.151 18 C 0.102 3.898 19 H 0.115 0.885 20 C 0.172 3.828 21 N -0.596 5.596 22 C -0.235 4.235 23 H 0.080 0.920 24 C -0.002 4.002 25 N -0.915 5.915 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.188 0.812 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 14.734 -10.811 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 N -0.126 5.126 4 N -0.132 5.132 5 C 0.095 3.905 6 C -0.218 4.218 7 C -0.200 4.200 8 C -0.222 4.222 9 C -0.058 4.058 10 C -0.292 4.292 11 C 0.397 3.603 12 O -0.437 6.437 13 N -0.337 5.337 14 C -0.047 4.047 15 C 0.031 3.969 16 H 0.123 0.877 17 C -0.190 4.190 18 C 0.000 4.000 19 H 0.132 0.868 20 C 0.047 3.953 21 N -0.321 5.321 22 C -0.363 4.363 23 H 0.098 0.902 24 C -0.200 4.200 25 N -0.561 5.561 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.048 15.948 -10.515 19.344 hybrid contribution 0.823 -1.018 0.937 1.610 sum 3.872 14.930 -9.577 18.156 Atomic orbital electron populations 1.20291 0.85958 1.03826 1.03135 1.22407 0.97058 0.88876 0.95783 1.77038 0.86120 1.22728 1.26723 1.48663 1.05338 1.04344 1.54898 1.20806 0.82127 0.90569 0.96981 1.22272 1.01309 1.03320 0.94880 1.21899 1.02048 0.92799 1.03226 1.22292 0.98362 1.02592 0.98924 1.23720 0.99670 0.85205 0.97218 1.20271 0.91981 0.94537 1.22438 1.16831 0.84713 0.82798 0.75981 1.90685 1.15917 1.84053 1.53055 1.48965 1.06379 1.06433 1.71922 1.23479 0.80592 1.01226 0.99356 1.23191 0.96521 0.89444 0.87734 0.87651 1.24206 0.96892 1.00950 0.96981 1.24266 0.98553 0.78233 0.98951 0.86756 1.21854 0.83186 0.99694 0.90571 1.45241 1.02025 1.73806 1.10991 1.19027 0.88202 1.39384 0.89671 0.90203 1.24835 0.96072 1.01556 0.97519 1.69937 1.11916 1.52456 1.21748 0.86151 0.80115 0.77458 0.82312 1.21682 1.21728 1.20574 0.90614 0.88589 0.91478 0.91570 0.90242 0.91625 0.91542 0.90964 0.90993 0.91237 0.89883 0.91217 0.79520 0.93053 0.91107 0.91615 0.89818 0.93017 0.93102 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 9.92 36.01 0.36 -0.69 16 2 C 0.13 2.07 7.26 -82.02 -0.60 1.48 16 3 N -0.30 -4.70 11.56 33.90 0.39 -4.31 16 4 N -0.35 -4.74 3.41 -48.11 -0.16 -4.90 16 5 C 0.18 1.72 1.23 -131.82 -0.16 1.55 16 6 C -0.16 -1.24 8.72 37.16 0.32 -0.92 16 7 C -0.14 -1.25 8.07 37.16 0.30 -0.95 16 8 C -0.16 -1.40 8.28 37.16 0.31 -1.09 16 9 C 0.09 1.34 9.21 -16.56 -0.15 1.19 16 10 C -0.28 -4.81 6.11 -105.07 -0.64 -5.46 16 11 C 0.61 11.98 7.89 -12.52 -0.10 11.88 16 12 O -0.56 -12.22 15.26 5.27 0.08 -12.14 16 13 N -0.60 -11.42 2.95 -158.14 -0.47 -11.88 16 14 C 0.08 1.31 4.38 -1.68 -0.01 1.31 16 15 C 0.14 2.51 5.53 -62.55 -0.35 2.16 16 16 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 17 C -0.15 -2.51 6.83 -22.10 -0.15 -2.66 16 18 C 0.10 1.99 5.23 -62.65 -0.33 1.67 16 19 H 0.11 2.17 8.05 -51.93 -0.42 1.76 16 20 C 0.17 4.11 4.75 -1.97 -0.01 4.10 16 21 N -0.60 -14.04 3.02 -156.68 -0.47 -14.51 16 22 C -0.23 -6.12 10.36 -15.05 -0.16 -6.28 16 23 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 24 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 25 N -0.91 -26.50 10.61 55.49 0.59 -25.92 16 26 Si 0.91 21.43 29.56 -169.99 -5.02 16.40 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.53 6.55 -51.93 -0.34 1.19 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.57 8.14 -51.94 -0.42 0.15 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 39 H 0.07 0.59 7.34 -51.93 -0.38 0.21 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.19 2.39 3.99 -52.49 -0.21 2.18 16 43 H 0.05 0.69 6.91 -51.93 -0.36 0.33 16 44 H 0.07 1.28 7.21 -51.93 -0.37 0.90 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.05 1.35 7.64 -51.93 -0.40 0.96 16 48 H 0.05 1.42 7.53 -51.93 -0.39 1.03 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -32.85 384.05 -8.64 -41.49 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.91 Total: 2.85 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.45 Total: 7.13 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.12 Total: -61.52 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.85 -8.64 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032400490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.969 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds