Wall clock time and date at job start Tue Mar 31 2020 17:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30441 * 125.98967 * 2 1 4 4 N 1.39933 * 108.89863 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.75388 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47078 * 255.02056 * 5 4 3 7 7 C 1.53002 * 109.47343 * 15.02252 * 5 4 3 8 8 C 1.53001 * 109.47037 * 135.01974 * 5 4 3 9 9 C 1.34260 * 108.48863 * 359.97438 * 4 3 2 10 10 C 1.38038 * 107.42057 * 0.02562 * 9 4 3 11 11 C 1.47429 * 126.41583 * 179.97438 * 10 9 4 12 12 O 1.21605 * 119.99934 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99864 * 0.03739 * 11 10 9 14 14 C 1.47862 * 126.94508 * 0.02824 * 13 11 10 15 15 C 1.56018 * 105.10269 * 181.97515 * 14 13 11 16 16 H 1.09006 * 116.24589 * 159.68597 * 15 14 13 17 17 C 1.57083 * 99.60729 * 32.80676 * 15 14 13 18 18 C 1.49291 * 126.94187 * 179.71051 * 13 11 10 19 19 H 1.09001 * 116.15303 * 15.86286 * 18 13 11 20 20 C 1.55487 * 104.35408 * 246.78487 * 18 13 11 21 21 N 1.47870 * 105.16638 * 288.90294 * 20 18 13 22 22 C 1.36946 * 126.94279 * 181.91908 * 21 20 18 23 23 H 1.07997 * 119.99604 * 173.66952 * 22 21 20 24 24 C 1.38816 * 119.99877 * 353.67586 * 22 21 20 25 25 N 1.31619 * 119.99899 * 6.41132 * 24 22 21 26 26 Si 1.86790 * 119.99876 * 186.41625 * 24 22 21 27 27 H 1.48501 * 109.47656 * 94.98139 * 26 24 22 28 28 H 1.48500 * 109.47189 * 214.98164 * 26 24 22 29 29 H 1.48504 * 109.47383 * 334.97966 * 26 24 22 30 30 H 1.08997 * 109.47112 * 90.02732 * 1 2 3 31 31 H 1.08997 * 109.47389 * 210.02487 * 1 2 3 32 32 H 1.08997 * 109.47069 * 330.02789 * 1 2 3 33 33 H 1.08989 * 109.47280 * 60.00034 * 6 5 4 34 34 H 1.09002 * 109.46780 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47266 * 299.99900 * 6 5 4 36 36 H 1.08999 * 109.47338 * 59.99911 * 7 5 4 37 37 H 1.09002 * 109.47228 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.46817 * 299.99729 * 7 5 4 39 39 H 1.08999 * 109.47107 * 60.00223 * 8 5 4 40 40 H 1.09002 * 109.47300 * 180.02562 * 8 5 4 41 41 H 1.08999 * 109.47211 * 299.99824 * 8 5 4 42 42 H 1.07999 * 126.28560 * 180.02562 * 9 4 3 43 43 H 1.08996 * 110.31729 * 300.88682 * 14 13 11 44 44 H 1.09006 * 110.31577 * 63.07014 * 14 13 11 45 45 H 1.08999 * 112.36278 * 64.27490 * 17 15 14 46 46 H 1.09001 * 112.36959 * 191.71004 * 17 15 14 47 47 H 1.08995 * 110.34986 * 169.94482 * 20 18 13 48 48 H 1.08998 * 110.21580 * 47.79800 * 20 18 13 49 49 H 0.97003 * 119.99904 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7787 1.5290 0.0003 6 6 5.4106 1.5389 -1.3931 7 6 4.3437 2.9477 0.3731 8 6 5.8012 1.0245 1.0205 9 6 3.6438 -0.6980 0.0015 10 6 2.3373 -1.1433 0.0009 11 6 1.8915 -2.5486 0.0011 12 8 0.7039 -2.8097 0.0000 13 7 2.8004 -3.5438 0.0026 14 6 4.2723 -3.4031 0.0048 15 6 4.8202 -4.8630 -0.0461 16 1 5.8474 -4.9806 -0.3916 17 6 3.6920 -5.5367 -0.9068 18 6 2.5244 -5.0110 0.0089 19 1 1.5099 -5.3101 -0.2547 20 6 3.0402 -5.4942 1.3939 21 7 4.5142 -5.4137 1.3073 22 6 5.4162 -5.7717 2.2735 23 1 6.4738 -5.7625 2.0549 24 6 4.9711 -6.1466 3.5338 25 7 3.6820 -6.2801 3.7637 26 14 6.2016 -6.4614 4.9034 27 1 6.3641 -5.2291 5.7160 28 1 5.7085 -7.5632 5.7684 29 1 7.5107 -6.8424 4.3148 30 1 -0.3633 -0.0005 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.6823 1.8983 -2.1198 34 1 6.2797 2.1969 -1.3932 35 1 5.7206 0.5282 -1.6587 36 1 3.8934 2.9407 1.3657 37 1 5.2123 3.6061 0.3724 38 1 3.6152 3.3071 -0.3538 39 1 6.1112 0.0138 0.7549 40 1 6.6697 1.6830 1.0206 41 1 5.3509 1.0174 2.0131 42 1 4.5297 -1.3158 0.0025 43 1 4.6005 -2.8449 -0.8720 44 1 4.6036 -2.9061 0.9166 45 1 3.6444 -5.1322 -1.9179 46 1 3.7621 -6.6244 -0.9045 47 1 2.7275 -6.5221 1.5772 48 1 2.6710 -4.8390 2.1829 49 1 3.3710 -6.5417 4.6445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032400490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:17 Heat of formation + Delta-G solvation = 80.424064 kcal Electronic energy + Delta-G solvation = -30154.838072 eV Core-core repulsion = 26312.735022 eV Total energy + Delta-G solvation = -3842.103050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64659 -41.33481 -39.14286 -37.71725 -35.47201 -33.60899 -32.95818 -31.64853 -30.29791 -30.19089 -28.80629 -28.36973 -28.13805 -27.00095 -25.68123 -23.82831 -22.54325 -21.48636 -21.17720 -20.68905 -19.57927 -18.84855 -17.78106 -17.42716 -17.18110 -16.70630 -16.34707 -16.01479 -15.66069 -15.46419 -15.01701 -14.97710 -14.87622 -14.47253 -14.09405 -13.82143 -13.65494 -13.51679 -13.38435 -13.18743 -13.13908 -13.11793 -13.06795 -12.97158 -12.79475 -12.74296 -12.71543 -12.29471 -12.25066 -12.15579 -12.10459 -12.01061 -11.84809 -11.67564 -11.50265 -10.86638 -10.65839 -10.32395 -9.78203 -9.39665 -8.87403 -7.83539 -5.18362 0.52106 1.10910 1.31722 1.47496 1.48467 1.57623 2.07122 2.47048 2.49842 3.23193 3.34132 3.41816 3.61899 3.70464 3.73842 3.77309 3.84800 3.90974 4.02254 4.11259 4.19389 4.26356 4.46986 4.51884 4.57277 4.60042 4.67029 4.69872 4.73093 4.74902 4.79013 4.82817 4.85556 4.90938 4.96905 5.00777 5.07118 5.09023 5.16591 5.22544 5.24467 5.26495 5.48119 5.54571 5.61479 5.68532 5.95228 6.11812 6.55906 6.74510 7.04293 7.28815 7.73273 8.44471 9.28188 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.004037 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.505442 B = 6934.033295 C = 8012.073435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.111 3.889 3 N -0.313 5.313 4 N -0.343 5.343 5 C 0.165 3.835 6 C -0.155 4.155 7 C -0.139 4.139 8 C -0.162 4.162 9 C 0.108 3.892 10 C -0.311 4.311 11 C 0.600 3.400 12 O -0.591 6.591 13 N -0.608 5.608 14 C 0.085 3.915 15 C 0.138 3.862 16 H 0.141 0.859 17 C -0.128 4.128 18 C 0.103 3.897 19 H 0.112 0.888 20 C 0.187 3.813 21 N -0.615 5.615 22 C -0.228 4.228 23 H 0.099 0.901 24 C -0.070 4.070 25 N -0.956 5.956 26 Si 0.973 3.027 27 H -0.294 1.294 28 H -0.304 1.304 29 H -0.258 1.258 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.049 0.951 42 H 0.209 0.791 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.014 0.986 48 H -0.003 1.003 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 16.543 -13.156 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.056 4.056 3 N -0.135 5.135 4 N -0.122 5.122 5 C 0.084 3.916 6 C -0.213 4.213 7 C -0.197 4.197 8 C -0.220 4.220 9 C -0.045 4.045 10 C -0.326 4.326 11 C 0.391 3.609 12 O -0.474 6.474 13 N -0.340 5.340 14 C -0.040 4.040 15 C 0.031 3.969 16 H 0.159 0.841 17 C -0.167 4.167 18 C 0.000 4.000 19 H 0.130 0.870 20 C 0.060 3.940 21 N -0.339 5.339 22 C -0.357 4.357 23 H 0.117 0.883 24 C -0.262 4.262 25 N -0.605 5.605 26 Si 0.802 3.198 27 H -0.222 1.222 28 H -0.231 1.231 29 H -0.182 1.182 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.068 0.932 42 H 0.225 0.775 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.032 0.968 48 H 0.015 0.985 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.687 17.803 -12.913 22.987 hybrid contribution -0.234 -1.491 1.638 2.227 sum 6.453 16.311 -11.275 20.853 Atomic orbital electron populations 1.20252 0.85306 1.03446 1.03765 1.22678 0.97923 0.88930 0.96091 1.77006 0.87137 1.22489 1.26848 1.49138 1.05643 1.04559 1.52828 1.21332 0.81097 0.90262 0.98914 1.22274 1.01879 1.04344 0.92768 1.21912 1.03087 0.92953 1.01733 1.22337 0.98830 1.03575 0.97294 1.23878 0.99153 0.85865 0.95601 1.20210 0.93587 0.93373 1.25411 1.17249 0.84403 0.83876 0.75337 1.90653 1.17383 1.84733 1.54660 1.49019 1.07476 1.05794 1.71688 1.23457 0.78990 1.00721 1.00789 1.23632 0.98785 0.89674 0.84761 0.84115 1.24114 0.93853 1.00894 0.97827 1.24117 0.99655 0.79237 0.96989 0.86981 1.21422 0.84267 0.96421 0.91844 1.45496 1.01382 1.74012 1.13054 1.19552 0.89416 1.36734 0.89977 0.88329 1.25660 0.97437 1.02965 1.00172 1.70185 1.14035 1.54967 1.21312 0.85134 0.78920 0.76420 0.79348 1.22168 1.23143 1.18170 0.89469 0.90884 0.89786 0.92633 0.87221 0.91196 0.93302 0.87709 0.92098 0.90963 0.86745 0.93166 0.77500 0.88242 0.92595 0.87918 0.89937 0.96786 0.98482 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.02 9.92 71.24 0.71 -1.31 16 2 C 0.11 3.64 7.26 43.52 0.32 3.96 16 3 N -0.31 -9.41 11.56 -46.67 -0.54 -9.95 16 4 N -0.34 -8.57 3.41 -306.13 -1.04 -9.61 16 5 C 0.16 2.69 1.23 3.60 0.00 2.69 16 6 C -0.15 -1.79 8.72 71.98 0.63 -1.16 16 7 C -0.14 -2.12 8.07 71.98 0.58 -1.54 16 8 C -0.16 -2.24 8.28 71.98 0.60 -1.64 16 9 C 0.11 2.93 9.21 84.27 0.78 3.70 16 10 C -0.31 -10.69 6.11 -20.15 -0.12 -10.82 16 11 C 0.60 24.01 7.89 86.66 0.68 24.69 16 12 O -0.59 -27.05 15.26 -4.05 -0.06 -27.11 16 13 N -0.61 -22.64 2.95 -772.48 -2.28 -24.92 16 14 C 0.08 2.58 4.38 87.16 0.38 2.96 16 15 C 0.14 4.50 5.53 46.93 0.26 4.76 16 16 H 0.14 3.67 8.14 -2.38 -0.02 3.65 16 17 C -0.13 -3.90 6.83 33.59 0.23 -3.67 16 18 C 0.10 4.05 5.23 46.87 0.24 4.29 16 19 H 0.11 4.41 8.05 -2.39 -0.02 4.39 16 20 C 0.19 9.34 4.75 86.97 0.41 9.75 16 21 N -0.62 -28.76 3.02 -649.60 -1.96 -30.72 16 22 C -0.23 -11.75 10.36 84.03 0.87 -10.88 16 23 H 0.10 4.62 7.84 -2.91 -0.02 4.60 16 24 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 25 N -0.96 -58.38 10.61 21.65 0.23 -58.15 16 26 Si 0.97 44.66 29.56 68.60 2.03 46.69 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 29 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.47 6.55 -2.39 -0.02 2.45 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.07 8.03 -2.39 -0.02 1.05 16 39 H 0.07 0.97 7.34 -2.39 -0.02 0.95 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.21 4.60 3.99 -2.91 -0.01 4.59 16 43 H 0.10 2.15 6.91 -2.39 -0.02 2.13 16 44 H 0.06 1.91 7.21 -2.38 -0.02 1.89 16 45 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.01 0.79 7.64 -2.39 -0.02 0.77 16 48 H 0.00 -0.18 7.53 -2.39 -0.02 -0.20 16 49 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -77.25 384.05 4.35 -72.90 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.94 Total: 18.48 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 7.03 Total: 22.40 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.59 Total: -133.36 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.25 4.35 -72.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032400490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.326 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds