Wall clock time and date at job start Tue Mar 31 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35312 * 126.13374 * 2 1 4 4 C 1.50704 * 126.03569 * 0.02562 * 3 2 1 5 5 C 1.50705 * 109.47226 * 84.71355 * 4 3 2 6 6 O 1.21290 * 119.99746 * 0.02562 * 5 4 3 7 7 N 1.34765 * 120.00154 * 179.97438 * 5 4 3 8 8 C 1.47675 * 134.45654 * 179.97438 * 7 5 4 9 9 C 1.53511 * 85.97915 * 204.29954 * 8 7 5 10 10 C 1.47665 * 134.46000 * 359.97438 * 7 5 4 11 11 C 1.52672 * 113.57279 * 91.01775 * 9 8 7 12 12 C 1.53333 * 109.11057 * 73.81521 * 11 9 8 13 13 N 1.46876 * 108.76371 * 52.40684 * 12 11 9 14 14 C 1.36931 * 120.46862 * 124.47177 * 13 12 11 15 15 H 1.08003 * 119.99939 * 331.99362 * 14 13 12 16 16 C 1.38810 * 120.00413 * 151.71146 * 14 13 12 17 17 N 1.31620 * 119.99930 * 342.48821 * 16 14 13 18 18 Si 1.86799 * 120.00312 * 162.48487 * 16 14 13 19 19 H 1.48498 * 109.47121 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47255 * 120.00502 * 18 16 14 21 21 H 1.48504 * 109.47064 * 240.00257 * 18 16 14 22 22 C 1.46880 * 119.06821 * 304.74118 * 13 12 11 23 23 C 1.52670 * 113.56269 * 222.23755 * 9 8 7 24 24 C 1.39866 * 107.92669 * 179.76092 * 3 2 1 25 25 N 1.30838 * 108.19932 * 0.24148 * 24 3 2 26 26 N 1.34954 * 126.12611 * 180.17540 * 2 1 3 27 27 C 1.46500 * 126.03675 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47049 * 89.99545 * 1 2 3 29 29 H 1.08992 * 109.47272 * 210.00066 * 1 2 3 30 30 H 1.09007 * 109.46798 * 330.00249 * 1 2 3 31 31 H 1.09001 * 109.47412 * 324.71552 * 4 3 2 32 32 H 1.08994 * 109.47161 * 204.71099 * 4 3 2 33 33 H 1.09001 * 113.78696 * 90.02994 * 8 7 5 34 34 H 1.08992 * 113.79279 * 318.56795 * 8 7 5 35 35 H 1.09004 * 113.79131 * 41.42874 * 10 7 5 36 36 H 1.09002 * 113.78977 * 269.96765 * 10 7 5 37 37 H 1.09001 * 109.52733 * 313.92494 * 11 9 8 38 38 H 1.08997 * 109.52854 * 193.70528 * 11 9 8 39 39 H 1.08996 * 109.58997 * 292.62013 * 12 11 9 40 40 H 1.08998 * 109.58551 * 172.18874 * 12 11 9 41 41 H 0.97004 * 120.00223 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.59377 * 175.04187 * 22 13 12 43 43 H 1.09004 * 109.59359 * 295.47976 * 22 13 12 44 44 H 1.08993 * 109.53368 * 46.07601 * 23 9 8 45 45 H 1.09001 * 109.52858 * 166.29678 * 23 9 8 46 46 H 1.07993 * 125.90395 * 180.22621 * 24 3 2 47 47 H 1.09005 * 109.46725 * 270.30655 * 27 26 2 48 48 H 1.09000 * 109.47073 * 30.30235 * 27 26 2 49 49 H 1.09001 * 109.47644 * 150.30478 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0928 0.0000 4 6 1.8434 2.5275 0.0005 5 6 1.5655 2.9653 1.4156 6 8 1.7267 2.1888 2.3333 7 7 1.1387 4.2197 1.6613 8 6 0.7790 4.9694 2.8817 9 6 -0.0777 5.8479 1.9594 10 6 0.8435 5.3956 0.8183 11 6 -1.5166 5.3587 1.8139 12 6 -2.2849 5.6683 3.1043 13 7 -2.1147 7.0913 3.4256 14 6 -3.2065 7.8995 3.5987 15 1 -4.1320 7.6730 3.0902 16 6 -3.1255 9.0065 4.4323 17 7 -2.1501 9.0985 5.3112 18 14 -4.4007 10.3657 4.3066 19 1 -5.3852 10.0244 3.2485 20 1 -5.1023 10.5080 5.6076 21 1 -3.7286 11.6449 3.9641 22 6 -0.7569 7.6367 3.5529 23 6 0.0216 7.3390 2.2715 24 6 3.6335 0.6558 0.0056 25 7 3.6333 -0.6525 0.0035 26 7 2.3026 -1.0900 -0.0033 27 6 1.8539 -2.4846 -0.0081 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 0.9333 2.6167 -0.5927 32 1 2.6207 3.1593 -0.4291 33 1 1.6174 5.4966 3.3370 34 1 0.1993 4.3891 3.5994 35 1 0.3149 5.1538 -0.1039 36 1 1.7010 6.0496 0.6599 37 1 -1.5197 4.2832 1.6370 38 1 -1.9918 5.8684 0.9757 39 1 -1.8915 5.0601 3.9187 40 1 -3.3432 5.4501 2.9607 41 1 -2.0937 9.8719 5.8940 42 1 -0.8088 8.7149 3.7048 43 1 -0.2534 7.1700 4.3996 44 1 1.0676 7.6142 2.4066 45 1 -0.4038 7.9128 1.4481 46 1 4.5084 1.2889 0.0104 47 1 1.7370 -2.8322 1.0184 48 1 0.8981 -2.5570 -0.5272 49 1 2.5925 -3.1023 -0.5190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050540766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:16 Heat of formation + Delta-G solvation = 97.495253 kcal Electronic energy + Delta-G solvation = -28925.279527 eV Core-core repulsion = 25083.916740 eV Total energy + Delta-G solvation = -3841.362787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.49621 -40.49833 -38.17166 -35.81417 -33.83765 -33.03594 -32.44062 -30.75202 -30.06463 -29.46921 -27.14631 -26.87102 -26.35249 -25.09837 -24.00872 -22.36105 -21.14020 -20.84890 -19.81339 -18.77266 -18.01193 -16.97993 -16.68089 -16.35736 -15.81346 -15.56804 -15.37363 -14.84828 -14.47354 -14.41783 -13.87212 -13.72363 -13.56268 -13.53166 -13.32062 -13.07474 -12.95880 -12.68348 -12.63742 -12.53017 -12.32800 -12.21414 -11.84656 -11.79098 -11.57781 -11.41643 -11.06141 -10.74970 -10.69005 -10.48144 -10.28814 -10.12732 -9.86676 -9.77250 -9.62498 -9.36634 -9.29040 -8.48942 -8.46323 -8.37468 -6.66931 -5.80002 -3.22435 1.72006 2.35178 2.57460 2.82967 3.14654 3.35942 3.44400 3.46191 4.29564 4.47730 4.48594 4.61928 4.69739 4.79193 4.86322 4.94986 5.03422 5.10999 5.16285 5.17860 5.23733 5.27438 5.37881 5.46387 5.53090 5.56596 5.61791 5.63181 5.66912 5.75911 5.92666 5.99158 6.04342 6.08581 6.14297 6.27440 6.45501 6.52323 6.57520 6.61881 6.67491 6.81383 6.87317 6.95433 7.33223 7.58146 7.64443 7.79161 7.93529 8.37714 8.44768 9.20778 9.84260 10.40477 11.28189 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.002306 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.983556 B =12137.446424 C =12520.051344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.102 3.898 3 C -0.221 4.221 4 C -0.053 4.053 5 C 0.530 3.470 6 O -0.540 6.540 7 N -0.642 5.642 8 C 0.118 3.882 9 C -0.074 4.074 10 C 0.102 3.898 11 C -0.107 4.107 12 C 0.146 3.854 13 N -0.590 5.590 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.170 3.830 23 C -0.127 4.127 24 C 0.063 3.937 25 N -0.302 5.302 26 N -0.376 5.376 27 C 0.102 3.898 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.054 0.946 41 H 0.253 0.747 42 H 0.089 0.911 43 H 0.018 0.982 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.180 0.820 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 -15.369 -14.645 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C -0.233 4.233 4 C -0.094 4.094 5 C 0.319 3.681 6 O -0.417 6.417 7 N -0.378 5.378 8 C -0.004 4.004 9 C -0.075 4.075 10 C -0.021 4.021 11 C -0.146 4.146 12 C 0.020 3.980 13 N -0.313 5.313 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.045 3.955 23 C -0.167 4.167 24 C -0.123 4.123 25 N -0.122 5.122 26 N -0.158 5.158 27 C -0.040 4.040 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.197 0.803 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.495 -17.116 -14.062 23.724 hybrid contribution -0.907 1.471 0.080 1.730 sum 7.588 -15.645 -13.982 22.312 Atomic orbital electron populations 1.20460 0.87416 1.04282 1.02980 1.20762 0.94391 0.87005 1.00416 1.19151 0.92575 0.93901 1.17639 1.19815 1.02825 0.92509 0.94209 1.20394 0.76015 0.80322 0.91350 1.90701 1.51943 1.52277 1.46737 1.50164 1.66386 1.09720 1.11557 1.23233 0.96912 0.90839 0.89411 1.21974 0.95034 0.96604 0.93914 1.23444 0.97782 0.84753 0.96113 1.21749 0.93182 0.98727 1.00932 1.20880 0.97403 0.86943 0.92780 1.44008 1.02288 1.03033 1.81967 1.19217 0.92193 1.05631 1.21069 0.91718 1.25042 0.98169 1.00811 0.95656 1.70045 1.33936 1.29490 1.21095 0.86257 0.81022 0.82307 0.77382 1.20285 1.21803 1.21571 1.20680 0.83432 1.00795 0.90640 1.22056 0.99829 0.92480 1.02329 1.23654 0.97435 0.92057 0.99106 1.77317 0.96559 1.12872 1.25481 1.48304 1.03963 1.05825 1.57755 1.21807 1.00842 0.77966 1.03344 0.90178 0.91042 0.89568 0.88802 0.88489 0.90113 0.90213 0.90408 0.89887 0.93026 0.91771 0.96428 0.92713 0.93692 0.89266 0.96432 0.92834 0.91993 0.80293 0.90840 0.89635 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.59 36.00 0.35 -0.44 16 2 C 0.10 1.17 6.93 -82.26 -0.57 0.60 16 3 C -0.22 -2.70 4.59 -105.05 -0.48 -3.18 16 4 C -0.05 -0.56 5.48 -29.03 -0.16 -0.72 16 5 C 0.53 7.69 8.05 -10.99 -0.09 7.60 16 6 O -0.54 -10.18 16.76 5.55 0.09 -10.09 16 7 N -0.64 -8.85 3.44 -180.20 -0.62 -9.47 16 8 C 0.12 1.82 7.62 -3.14 -0.02 1.79 16 9 C -0.07 -1.10 0.77 -154.43 -0.12 -1.22 16 10 C 0.10 1.17 7.74 -3.17 -0.02 1.15 16 11 C -0.11 -1.70 5.21 -26.73 -0.14 -1.83 16 12 C 0.15 2.93 6.38 -3.66 -0.02 2.90 16 13 N -0.59 -14.04 2.97 -172.51 -0.51 -14.55 16 14 C -0.25 -6.65 9.55 -15.06 -0.14 -6.80 16 15 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 16 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 17 N -0.90 -25.52 11.21 55.49 0.62 -24.89 16 18 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.17 3.79 5.20 -3.91 -0.02 3.77 16 23 C -0.13 -2.13 5.24 -26.97 -0.14 -2.27 16 24 C 0.06 0.79 11.96 -17.37 -0.21 0.58 16 25 N -0.30 -4.08 12.58 30.62 0.39 -3.70 16 26 N -0.38 -4.36 4.01 -63.88 -0.26 -4.61 16 27 C 0.10 0.71 11.09 59.85 0.66 1.38 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.51 7.74 -51.93 -0.40 0.11 16 30 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.09 0.83 8.02 -51.93 -0.42 0.41 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.08 1.38 7.41 -51.93 -0.38 0.99 16 35 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.05 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.37 7.49 -51.93 -0.39 -0.02 16 40 H 0.05 1.09 7.92 -51.93 -0.41 0.67 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.09 2.26 5.98 -51.93 -0.31 1.95 16 43 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.38 7.68 -51.93 -0.40 -0.02 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -34.34 393.91 -8.75 -43.08 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.15 Total: -1.10 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.22 Total: 3.27 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.38 Total: -57.23 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.34 -8.75 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050540766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.580 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds