Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35312 * 126.13374 * 2 1 4 4 C 1.50704 * 126.03569 * 0.02562 * 3 2 1 5 5 C 1.50705 * 109.47226 * 84.71355 * 4 3 2 6 6 O 1.21290 * 119.99746 * 0.02562 * 5 4 3 7 7 N 1.34765 * 120.00154 * 179.97438 * 5 4 3 8 8 C 1.47675 * 134.45654 * 179.97438 * 7 5 4 9 9 C 1.53511 * 85.97915 * 204.29954 * 8 7 5 10 10 C 1.47665 * 134.46000 * 359.97438 * 7 5 4 11 11 C 1.52672 * 113.57279 * 91.01775 * 9 8 7 12 12 C 1.53333 * 109.11057 * 73.81521 * 11 9 8 13 13 N 1.46876 * 108.76371 * 52.40684 * 12 11 9 14 14 C 1.36931 * 120.46862 * 124.47177 * 13 12 11 15 15 H 1.08003 * 119.99939 * 331.99362 * 14 13 12 16 16 C 1.38810 * 120.00413 * 151.71146 * 14 13 12 17 17 N 1.31620 * 119.99930 * 342.48821 * 16 14 13 18 18 Si 1.86799 * 120.00312 * 162.48487 * 16 14 13 19 19 H 1.48498 * 109.47121 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47255 * 120.00502 * 18 16 14 21 21 H 1.48504 * 109.47064 * 240.00257 * 18 16 14 22 22 C 1.46880 * 119.06821 * 304.74118 * 13 12 11 23 23 C 1.52670 * 113.56269 * 222.23755 * 9 8 7 24 24 C 1.39866 * 107.92669 * 179.76092 * 3 2 1 25 25 N 1.30838 * 108.19932 * 0.24148 * 24 3 2 26 26 N 1.34954 * 126.12611 * 180.17540 * 2 1 3 27 27 C 1.46500 * 126.03675 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47049 * 89.99545 * 1 2 3 29 29 H 1.08992 * 109.47272 * 210.00066 * 1 2 3 30 30 H 1.09007 * 109.46798 * 330.00249 * 1 2 3 31 31 H 1.09001 * 109.47412 * 324.71552 * 4 3 2 32 32 H 1.08994 * 109.47161 * 204.71099 * 4 3 2 33 33 H 1.09001 * 113.78696 * 90.02994 * 8 7 5 34 34 H 1.08992 * 113.79279 * 318.56795 * 8 7 5 35 35 H 1.09004 * 113.79131 * 41.42874 * 10 7 5 36 36 H 1.09002 * 113.78977 * 269.96765 * 10 7 5 37 37 H 1.09001 * 109.52733 * 313.92494 * 11 9 8 38 38 H 1.08997 * 109.52854 * 193.70528 * 11 9 8 39 39 H 1.08996 * 109.58997 * 292.62013 * 12 11 9 40 40 H 1.08998 * 109.58551 * 172.18874 * 12 11 9 41 41 H 0.97004 * 120.00223 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.59377 * 175.04187 * 22 13 12 43 43 H 1.09004 * 109.59359 * 295.47976 * 22 13 12 44 44 H 1.08993 * 109.53368 * 46.07601 * 23 9 8 45 45 H 1.09001 * 109.52858 * 166.29678 * 23 9 8 46 46 H 1.07993 * 125.90395 * 180.22621 * 24 3 2 47 47 H 1.09005 * 109.46725 * 270.30655 * 27 26 2 48 48 H 1.09000 * 109.47073 * 30.30235 * 27 26 2 49 49 H 1.09001 * 109.47644 * 150.30478 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0928 0.0000 4 6 1.8434 2.5275 0.0005 5 6 1.5655 2.9653 1.4156 6 8 1.7267 2.1888 2.3333 7 7 1.1387 4.2197 1.6613 8 6 0.7790 4.9694 2.8817 9 6 -0.0777 5.8479 1.9594 10 6 0.8435 5.3956 0.8183 11 6 -1.5166 5.3587 1.8139 12 6 -2.2849 5.6683 3.1043 13 7 -2.1147 7.0913 3.4256 14 6 -3.2065 7.8995 3.5987 15 1 -4.1320 7.6730 3.0902 16 6 -3.1255 9.0065 4.4323 17 7 -2.1501 9.0985 5.3112 18 14 -4.4007 10.3657 4.3066 19 1 -5.3852 10.0244 3.2485 20 1 -5.1023 10.5080 5.6076 21 1 -3.7286 11.6449 3.9641 22 6 -0.7569 7.6367 3.5529 23 6 0.0216 7.3390 2.2715 24 6 3.6335 0.6558 0.0056 25 7 3.6333 -0.6525 0.0035 26 7 2.3026 -1.0900 -0.0033 27 6 1.8539 -2.4846 -0.0081 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 0.9333 2.6167 -0.5927 32 1 2.6207 3.1593 -0.4291 33 1 1.6174 5.4966 3.3370 34 1 0.1993 4.3891 3.5994 35 1 0.3149 5.1538 -0.1039 36 1 1.7010 6.0496 0.6599 37 1 -1.5197 4.2832 1.6370 38 1 -1.9918 5.8684 0.9757 39 1 -1.8915 5.0601 3.9187 40 1 -3.3432 5.4501 2.9607 41 1 -2.0937 9.8719 5.8940 42 1 -0.8088 8.7149 3.7048 43 1 -0.2534 7.1700 4.3996 44 1 1.0676 7.6142 2.4066 45 1 -0.4038 7.9128 1.4481 46 1 4.5084 1.2889 0.0104 47 1 1.7370 -2.8322 1.0184 48 1 0.8981 -2.5570 -0.5272 49 1 2.5925 -3.1023 -0.5190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050540766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = 76.041658 kcal Electronic energy + Delta-G solvation = -28926.209825 eV Core-core repulsion = 25083.916740 eV Total energy + Delta-G solvation = -3842.293085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32634 -41.65809 -39.40959 -37.42167 -34.60587 -34.21486 -33.81560 -32.23446 -31.45903 -30.56760 -28.44201 -27.59139 -27.41296 -26.20516 -25.54659 -23.90354 -22.54074 -21.87335 -20.74514 -19.85234 -19.41449 -18.36348 -17.74915 -17.46907 -16.84223 -16.76307 -16.61415 -16.27346 -15.63849 -15.47401 -15.21565 -15.16932 -14.86211 -14.51711 -14.45637 -14.02302 -13.96724 -13.75183 -13.68302 -13.33432 -13.26523 -13.19562 -13.02599 -12.99551 -12.88075 -12.82714 -12.58367 -12.54707 -12.20583 -11.95999 -11.76433 -11.53222 -11.29026 -11.24386 -11.16998 -10.64414 -10.45320 -10.17217 -9.58824 -9.23321 -8.61285 -7.82992 -5.28270 0.90573 1.48573 1.51025 1.61016 1.61119 1.70475 1.77692 2.14568 2.54801 3.29204 3.49371 3.62009 3.67394 3.78741 3.79469 3.93685 4.11460 4.14195 4.25390 4.31049 4.37402 4.43073 4.45682 4.54283 4.57514 4.61975 4.68128 4.68374 4.70048 4.78115 4.79153 4.89914 4.95917 4.98795 4.99317 5.02627 5.08850 5.20919 5.25333 5.26713 5.42672 5.43341 5.59294 5.70289 5.71465 5.85531 6.15658 6.44481 6.74229 6.88413 7.20492 7.29405 7.92474 8.42995 9.22681 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.002306 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.983556 B =12137.446424 C =12520.051344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.244 4.244 4 C -0.040 4.040 5 C 0.528 3.472 6 O -0.593 6.593 7 N -0.640 5.640 8 C 0.110 3.890 9 C -0.076 4.076 10 C 0.122 3.878 11 C -0.091 4.091 12 C 0.142 3.858 13 N -0.608 5.608 14 C -0.257 4.257 15 H 0.066 0.934 16 C -0.052 4.052 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.289 1.289 22 C 0.175 3.825 23 C -0.111 4.111 24 C 0.050 3.950 25 N -0.339 5.339 26 N -0.382 5.382 27 C 0.092 3.908 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.001 0.999 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.054 0.946 43 H -0.010 1.010 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.196 0.804 47 H 0.076 0.924 48 H 0.114 0.886 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -15.698 -17.979 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 C -0.255 4.255 4 C -0.081 4.081 5 C 0.319 3.681 6 O -0.474 6.474 7 N -0.375 5.375 8 C -0.013 4.013 9 C -0.077 4.077 10 C 0.000 4.000 11 C -0.130 4.130 12 C 0.016 3.984 13 N -0.331 5.331 14 C -0.387 4.387 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.225 1.225 21 H -0.216 1.216 22 C 0.049 3.951 23 C -0.151 4.151 24 C -0.135 4.135 25 N -0.160 5.160 26 N -0.165 5.165 27 C -0.048 4.048 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.008 0.992 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.213 0.787 47 H 0.094 0.906 48 H 0.132 0.868 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.217 -17.458 -17.446 26.013 hybrid contribution -0.857 1.479 1.217 2.098 sum 7.360 -15.979 -16.229 23.935 Atomic orbital electron populations 1.20540 0.85390 1.04240 1.04662 1.21321 0.95785 0.87012 0.99335 1.19464 0.92567 0.95005 1.18480 1.19844 1.04791 0.91911 0.91540 1.21136 0.74764 0.79701 0.92462 1.90682 1.54261 1.53726 1.48684 1.50202 1.65852 1.10211 1.11201 1.23164 0.97025 0.91196 0.89904 1.21890 0.94997 0.94798 0.96005 1.23517 0.97650 0.83351 0.95455 1.21551 0.93260 0.99855 0.98354 1.21002 0.98021 0.84764 0.94565 1.44282 1.02253 1.04419 1.82152 1.19538 0.92990 1.05937 1.20277 0.91633 1.25775 1.00243 1.03022 0.95701 1.70203 1.35886 1.29896 1.22185 0.85254 0.78913 0.79458 0.77096 1.18974 1.22479 1.21568 1.20511 0.83509 0.98204 0.92836 1.21824 1.00080 0.94141 0.99032 1.24059 0.98531 0.92128 0.98794 1.77234 0.98194 1.13653 1.26907 1.48671 1.03409 1.07272 1.57157 1.22139 1.02407 0.76197 1.04104 0.87478 0.89967 0.90711 0.86177 0.85890 0.89937 0.93124 0.87082 0.87289 0.91384 0.90722 0.98099 0.93041 0.94245 0.92798 0.99156 0.90521 0.91439 0.78717 0.90590 0.86771 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.59 71.23 0.68 -0.61 16 2 C 0.09 2.00 6.93 41.40 0.29 2.28 16 3 C -0.24 -5.50 4.59 -20.14 -0.09 -5.59 16 4 C -0.04 -0.72 5.48 29.10 0.16 -0.56 16 5 C 0.53 14.21 8.05 87.66 0.71 14.91 16 6 O -0.59 -22.24 16.76 -3.06 -0.05 -22.29 16 7 N -0.64 -15.87 3.44 -842.41 -2.90 -18.77 16 8 C 0.11 3.30 7.62 86.32 0.66 3.96 16 9 C -0.08 -2.06 0.77 -52.04 -0.04 -2.10 16 10 C 0.12 2.20 7.74 86.31 0.67 2.87 16 11 C -0.09 -2.70 5.21 30.60 0.16 -2.54 16 12 C 0.14 5.70 6.38 86.42 0.55 6.25 16 13 N -0.61 -29.32 2.97 -699.71 -2.08 -31.40 16 14 C -0.26 -13.76 9.55 84.03 0.80 -12.95 16 15 H 0.07 3.43 7.89 -2.91 -0.02 3.40 16 16 C -0.05 -2.87 4.90 84.86 0.42 -2.45 16 17 N -0.94 -54.77 11.21 21.65 0.24 -54.53 16 18 Si 0.96 44.06 29.59 68.60 2.03 46.09 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 C 0.18 7.95 5.20 86.26 0.45 8.40 16 23 C -0.11 -3.54 5.24 30.44 0.16 -3.38 16 24 C 0.05 1.20 11.96 85.23 1.02 2.22 16 25 N -0.34 -9.02 12.58 -57.03 -0.72 -9.74 16 26 N -0.38 -8.42 4.01 -356.02 -1.43 -9.84 16 27 C 0.09 1.14 11.09 127.77 1.42 2.56 16 28 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.98 7.74 -2.39 -0.02 0.96 16 30 H 0.07 1.27 7.89 -2.38 -0.02 1.25 16 31 H 0.12 1.53 8.02 -2.39 -0.02 1.51 16 32 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 34 H 0.05 1.80 7.41 -2.39 -0.02 1.78 16 35 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.11 1.54 8.09 -2.39 -0.02 1.52 16 37 H 0.07 1.82 8.01 -2.39 -0.02 1.80 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.00 0.05 7.49 -2.39 -0.02 0.03 16 40 H 0.05 2.04 7.92 -2.39 -0.02 2.03 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.05 2.82 5.98 -2.38 -0.01 2.81 16 43 H -0.01 -0.48 8.08 -2.38 -0.02 -0.50 16 44 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 47 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.11 0.72 7.68 -2.39 -0.02 0.70 16 49 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.88 393.91 4.03 -74.85 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.93 Total: 12.36 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 8.00 Total: 13.27 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -6.88 Total: -124.28 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -78.88 4.03 -74.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050540766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.893 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds