Wall clock time and date at job start Tue Mar 31 2020 18:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39873 * 125.89455 * 2 1 4 4 C 1.35309 * 107.91734 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.12868 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46800 * 84.99559 * 5 4 3 7 7 O 1.21275 * 120.00421 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99398 * 180.02562 * 6 5 4 9 9 C 1.47159 * 136.00584 * 359.63529 * 8 6 5 10 10 C 1.52646 * 87.97404 * 206.71903 * 9 8 6 11 11 C 1.47161 * 135.99459 * 179.97438 * 8 6 5 12 12 C 1.52551 * 113.89603 * 88.16671 * 10 9 8 13 13 C 1.53356 * 109.13066 * 190.30815 * 12 10 9 14 14 N 1.46893 * 108.74677 * 307.76227 * 13 12 10 15 15 C 1.36939 * 120.45962 * 235.60113 * 14 13 12 16 16 H 1.08003 * 119.99928 * 28.46924 * 15 14 13 17 17 C 1.38815 * 119.99689 * 208.46913 * 15 14 13 18 18 N 1.31618 * 119.99941 * 17.65201 * 17 15 14 19 19 Si 1.86805 * 119.99812 * 197.64577 * 17 15 14 20 20 H 1.48500 * 109.46718 * 60.00415 * 19 17 15 21 21 H 1.48499 * 109.46816 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47163 * 300.00745 * 19 17 15 23 23 C 1.46896 * 119.07695 * 55.62274 * 14 13 12 24 24 C 1.52548 * 114.25868 * 220.76377 * 10 9 8 25 25 N 1.34952 * 107.75029 * 359.97438 * 4 3 2 26 26 C 1.46500 * 126.04212 * 180.02562 * 25 4 3 27 27 N 1.30834 * 125.89939 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47648 * 270.02673 * 1 2 3 29 29 H 1.09004 * 109.47499 * 30.03323 * 1 2 3 30 30 H 1.09007 * 109.47071 * 150.02504 * 1 2 3 31 31 H 1.07998 * 126.04331 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.46991 * 204.99387 * 5 4 3 33 33 H 1.09000 * 109.46803 * 324.99516 * 5 4 3 34 34 H 1.09012 * 113.48611 * 321.41338 * 9 8 6 35 35 H 1.09002 * 113.49185 * 91.91187 * 9 8 6 36 36 H 1.09000 * 113.48839 * 268.07791 * 11 8 6 37 37 H 1.08996 * 113.49455 * 38.59173 * 11 8 6 38 38 H 1.08994 * 109.52916 * 310.20757 * 12 10 9 39 39 H 1.09000 * 109.52375 * 70.41588 * 12 10 9 40 40 H 1.09000 * 109.59159 * 187.98558 * 13 12 10 41 41 H 1.08991 * 109.59074 * 67.53830 * 13 12 10 42 42 H 0.97002 * 120.00031 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.59157 * 184.58274 * 23 14 13 44 44 H 1.09004 * 109.58867 * 64.14056 * 23 14 13 45 45 H 1.09000 * 109.52920 * 289.75039 * 24 10 9 46 46 H 1.09002 * 109.53580 * 49.95876 * 24 10 9 47 47 H 1.08990 * 109.47340 * 270.00875 * 26 25 4 48 48 H 1.09001 * 109.46895 * 30.00626 * 26 25 4 49 49 H 1.09004 * 109.46786 * 150.00178 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 6 5.1699 1.9942 1.4139 7 8 4.4851 1.5971 2.3326 8 7 6.2306 2.7889 1.6584 9 6 7.2696 3.4464 0.8499 10 6 8.1790 3.3951 2.0749 11 6 6.8613 3.3750 2.8519 12 6 8.9890 2.1075 2.1896 13 6 9.6579 2.0557 3.5686 14 7 10.3945 3.3084 3.7833 15 6 11.7300 3.2854 4.0849 16 1 12.3484 2.4715 3.7364 17 6 12.2890 4.3084 4.8386 18 7 11.5148 5.1005 5.5497 19 14 14.1399 4.5606 4.8438 20 1 14.6055 4.8381 3.4612 21 1 14.4805 5.7093 5.7212 22 1 14.8051 3.3347 5.3534 23 6 9.6783 4.5860 3.6704 24 6 9.0097 4.6559 2.2921 25 7 3.6088 -0.6340 -0.0004 26 6 4.7899 -1.5007 -0.0003 27 7 2.2742 -1.0598 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3633 -0.8903 -0.5135 31 1 1.9922 2.1599 -0.0004 32 1 5.6752 1.0574 -0.4359 33 1 4.6355 2.4939 -0.5909 34 1 7.6260 2.8355 0.0204 35 1 7.0071 4.4597 0.5458 36 1 6.4867 4.3687 3.0976 37 1 6.8735 2.7040 3.7108 38 1 8.3273 1.2492 2.0731 39 1 9.7534 2.0876 1.4128 40 1 10.3492 1.2139 3.6081 41 1 8.8965 1.9427 4.3401 42 1 11.9055 5.8151 6.0766 43 1 10.3830 5.4106 3.7773 44 1 8.9180 4.6488 4.4490 45 1 9.7750 4.7257 1.5190 46 1 8.3623 5.5316 2.2452 47 1 5.0829 -1.7157 -1.0278 48 1 5.6093 -0.9980 0.5135 49 1 4.5563 -2.4331 0.5137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050589937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:23 Heat of formation + Delta-G solvation = 101.017177 kcal Electronic energy + Delta-G solvation = -28832.187184 eV Core-core repulsion = 24990.977119 eV Total energy + Delta-G solvation = -3841.210065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50773 -40.75808 -38.38550 -35.95390 -34.25830 -32.69016 -32.25821 -30.72839 -29.91372 -29.68513 -28.29017 -26.73469 -25.87698 -25.48063 -24.16683 -22.45296 -21.15184 -20.61490 -19.83556 -18.94202 -18.08155 -17.18704 -16.84512 -16.46181 -15.84618 -15.77995 -15.26823 -14.88919 -14.65062 -14.13168 -14.01878 -13.73044 -13.69625 -13.60420 -13.53558 -13.14543 -13.06876 -12.71344 -12.64039 -12.47575 -12.27649 -12.22709 -12.07473 -11.88462 -11.62252 -11.48275 -11.11017 -10.75788 -10.66107 -10.54266 -10.39011 -10.15437 -10.01717 -9.87005 -9.67991 -9.46785 -9.16658 -8.65497 -8.57946 -8.49627 -6.71066 -5.83445 -3.26256 1.65919 2.34178 2.56197 2.60543 2.94858 3.35149 3.41489 3.42176 4.20535 4.32486 4.36579 4.45768 4.52602 4.66311 4.89934 4.93796 4.99852 5.04797 5.12309 5.16374 5.23185 5.33626 5.40763 5.44261 5.45198 5.50711 5.52189 5.59390 5.68296 5.72162 5.75690 5.88596 5.99986 6.01753 6.04845 6.20315 6.38061 6.50789 6.54116 6.58051 6.59494 6.75046 6.86019 6.89764 7.27503 7.59499 7.62172 7.75263 7.75483 8.10745 8.41305 9.17031 9.80237 10.36500 11.24712 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002264 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.266817 B =12362.397037 C =12687.751264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.070 3.930 3 C -0.255 4.255 4 C 0.107 3.893 5 C -0.074 4.074 6 C 0.540 3.460 7 O -0.532 6.532 8 N -0.643 5.643 9 C 0.099 3.901 10 C -0.075 4.075 11 C 0.115 3.885 12 C -0.105 4.105 13 C 0.147 3.853 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.171 3.829 24 C -0.124 4.124 25 N -0.367 5.367 26 C 0.100 3.900 27 N -0.296 5.296 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.619 -5.214 -15.151 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 C -0.284 4.284 4 C -0.020 4.020 5 C -0.115 4.115 6 C 0.328 3.672 7 O -0.409 6.409 8 N -0.378 5.378 9 C -0.023 4.023 10 C -0.076 4.076 11 C -0.007 4.007 12 C -0.145 4.145 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.045 3.955 24 C -0.164 4.164 25 N -0.149 5.149 26 C -0.042 4.042 27 N -0.119 5.119 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.960 -6.826 -14.568 21.969 hybrid contribution 1.041 1.136 0.046 1.542 sum -13.919 -5.690 -14.522 20.904 Atomic orbital electron populations 1.20154 0.86727 1.03044 1.02966 1.22249 0.96876 0.90724 0.99662 1.21011 0.90802 0.99727 1.16891 1.20234 0.95889 0.84326 1.01594 1.20187 0.95198 1.00048 0.96103 1.19772 0.78470 0.78538 0.90402 1.90763 1.48954 1.54921 1.46215 1.49683 1.27489 1.47839 1.12821 1.23248 0.85385 0.97321 0.96392 1.21649 0.93202 0.98755 0.94005 1.23091 0.89317 0.98139 0.90120 1.21707 0.97902 0.93701 1.01150 1.20880 0.94430 0.90447 0.92250 1.44018 1.06527 0.99404 1.81306 1.19131 0.83680 1.08754 1.26825 0.91794 1.25047 0.97784 1.00332 0.96407 1.70018 1.34015 1.20972 1.29547 0.86383 0.85561 0.77445 0.77455 1.21021 1.21655 1.20910 1.20794 0.94863 0.90308 0.89572 1.22072 0.98286 0.93394 1.02678 1.48291 1.05530 1.03949 1.57093 1.21844 0.84024 0.95197 1.03099 1.77273 0.86109 1.22642 1.25852 0.90559 0.90500 0.91089 0.83801 0.87895 0.86370 0.90725 0.89645 0.89838 0.90350 0.93184 0.91664 0.92642 0.96426 0.93532 0.89138 0.96342 0.91828 0.92765 0.90677 0.89702 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.45 36.01 0.38 -0.23 16 2 C 0.07 0.89 7.22 -82.41 -0.59 0.30 16 3 C -0.26 -3.19 10.65 -40.01 -0.43 -3.61 16 4 C 0.11 1.33 5.42 -82.26 -0.45 0.89 16 5 C -0.07 -0.73 5.63 -29.03 -0.16 -0.90 16 6 C 0.54 7.49 8.07 -10.98 -0.09 7.41 16 7 O -0.53 -9.84 16.81 5.56 0.09 -9.74 16 8 N -0.64 -8.39 3.46 -185.31 -0.64 -9.03 16 9 C 0.10 1.07 7.56 -8.38 -0.06 1.01 16 10 C -0.08 -1.07 0.83 -155.16 -0.13 -1.20 16 11 C 0.12 1.69 7.57 -8.20 -0.06 1.63 16 12 C -0.11 -1.63 5.25 -26.78 -0.14 -1.77 16 13 C 0.15 2.89 6.41 -3.64 -0.02 2.87 16 14 N -0.59 -13.84 2.96 -172.17 -0.51 -14.35 16 15 C -0.25 -6.66 9.56 -15.06 -0.14 -6.81 16 16 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 17 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 18 N -0.90 -25.25 11.21 55.49 0.62 -24.62 16 19 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.17 3.71 5.27 -3.64 -0.02 3.69 16 24 C -0.12 -2.01 5.31 -26.78 -0.14 -2.15 16 25 N -0.37 -4.69 4.01 -63.89 -0.26 -4.95 16 26 C 0.10 0.90 11.06 59.85 0.66 1.56 16 27 N -0.30 -4.19 12.58 33.67 0.42 -3.77 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.10 0.79 7.49 -51.93 -0.39 0.40 16 33 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 35 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 37 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 38 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 41 H 0.02 0.37 7.60 -51.93 -0.39 -0.03 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.09 2.25 5.97 -51.93 -0.31 1.94 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.71 7.55 -51.93 -0.39 0.31 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -33.92 394.99 -8.99 -42.91 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.16 Total: -1.02 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.49 Total: 2.67 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.36 Total: -56.72 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.92 -8.99 -42.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050589937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.927 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds