Wall clock time and date at job start Tue Mar 31 2020 18:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39873 * 125.89455 * 2 1 4 4 C 1.35309 * 107.91734 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.12868 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46800 * 84.99559 * 5 4 3 7 7 O 1.21275 * 120.00421 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99398 * 180.02562 * 6 5 4 9 9 C 1.47159 * 136.00584 * 359.63529 * 8 6 5 10 10 C 1.52646 * 87.97404 * 206.71903 * 9 8 6 11 11 C 1.47161 * 135.99459 * 179.97438 * 8 6 5 12 12 C 1.52551 * 113.89603 * 88.16671 * 10 9 8 13 13 C 1.53356 * 109.13066 * 190.30815 * 12 10 9 14 14 N 1.46893 * 108.74677 * 307.76227 * 13 12 10 15 15 C 1.36939 * 120.45962 * 235.60113 * 14 13 12 16 16 H 1.08003 * 119.99928 * 28.46924 * 15 14 13 17 17 C 1.38815 * 119.99689 * 208.46913 * 15 14 13 18 18 N 1.31618 * 119.99941 * 17.65201 * 17 15 14 19 19 Si 1.86805 * 119.99812 * 197.64577 * 17 15 14 20 20 H 1.48500 * 109.46718 * 60.00415 * 19 17 15 21 21 H 1.48499 * 109.46816 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47163 * 300.00745 * 19 17 15 23 23 C 1.46896 * 119.07695 * 55.62274 * 14 13 12 24 24 C 1.52548 * 114.25868 * 220.76377 * 10 9 8 25 25 N 1.34952 * 107.75029 * 359.97438 * 4 3 2 26 26 C 1.46500 * 126.04212 * 180.02562 * 25 4 3 27 27 N 1.30834 * 125.89939 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47648 * 270.02673 * 1 2 3 29 29 H 1.09004 * 109.47499 * 30.03323 * 1 2 3 30 30 H 1.09007 * 109.47071 * 150.02504 * 1 2 3 31 31 H 1.07998 * 126.04331 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.46991 * 204.99387 * 5 4 3 33 33 H 1.09000 * 109.46803 * 324.99516 * 5 4 3 34 34 H 1.09012 * 113.48611 * 321.41338 * 9 8 6 35 35 H 1.09002 * 113.49185 * 91.91187 * 9 8 6 36 36 H 1.09000 * 113.48839 * 268.07791 * 11 8 6 37 37 H 1.08996 * 113.49455 * 38.59173 * 11 8 6 38 38 H 1.08994 * 109.52916 * 310.20757 * 12 10 9 39 39 H 1.09000 * 109.52375 * 70.41588 * 12 10 9 40 40 H 1.09000 * 109.59159 * 187.98558 * 13 12 10 41 41 H 1.08991 * 109.59074 * 67.53830 * 13 12 10 42 42 H 0.97002 * 120.00031 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.59157 * 184.58274 * 23 14 13 44 44 H 1.09004 * 109.58867 * 64.14056 * 23 14 13 45 45 H 1.09000 * 109.52920 * 289.75039 * 24 10 9 46 46 H 1.09002 * 109.53580 * 49.95876 * 24 10 9 47 47 H 1.08990 * 109.47340 * 270.00875 * 26 25 4 48 48 H 1.09001 * 109.46895 * 30.00626 * 26 25 4 49 49 H 1.09004 * 109.46786 * 150.00178 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 6 5.1699 1.9942 1.4139 7 8 4.4851 1.5971 2.3326 8 7 6.2306 2.7889 1.6584 9 6 7.2696 3.4464 0.8499 10 6 8.1790 3.3951 2.0749 11 6 6.8613 3.3750 2.8519 12 6 8.9890 2.1075 2.1896 13 6 9.6579 2.0557 3.5686 14 7 10.3945 3.3084 3.7833 15 6 11.7300 3.2854 4.0849 16 1 12.3484 2.4715 3.7364 17 6 12.2890 4.3084 4.8386 18 7 11.5148 5.1005 5.5497 19 14 14.1399 4.5606 4.8438 20 1 14.6055 4.8381 3.4612 21 1 14.4805 5.7093 5.7212 22 1 14.8051 3.3347 5.3534 23 6 9.6783 4.5860 3.6704 24 6 9.0097 4.6559 2.2921 25 7 3.6088 -0.6340 -0.0004 26 6 4.7899 -1.5007 -0.0003 27 7 2.2742 -1.0598 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3633 -0.8903 -0.5135 31 1 1.9922 2.1599 -0.0004 32 1 5.6752 1.0574 -0.4359 33 1 4.6355 2.4939 -0.5909 34 1 7.6260 2.8355 0.0204 35 1 7.0071 4.4597 0.5458 36 1 6.4867 4.3687 3.0976 37 1 6.8735 2.7040 3.7108 38 1 8.3273 1.2492 2.0731 39 1 9.7534 2.0876 1.4128 40 1 10.3492 1.2139 3.6081 41 1 8.8965 1.9427 4.3401 42 1 11.9055 5.8151 6.0766 43 1 10.3830 5.4106 3.7773 44 1 8.9180 4.6488 4.4490 45 1 9.7750 4.7257 1.5190 46 1 8.3623 5.5316 2.2452 47 1 5.0829 -1.7157 -1.0278 48 1 5.6093 -0.9980 0.5135 49 1 4.5563 -2.4331 0.5137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050589937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:22 Heat of formation + Delta-G solvation = 79.697758 kcal Electronic energy + Delta-G solvation = -28833.111664 eV Core-core repulsion = 24990.977119 eV Total energy + Delta-G solvation = -3842.134545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39715 -41.84777 -39.57322 -37.53875 -35.06937 -34.27997 -33.28463 -32.19544 -31.40697 -30.45955 -29.41980 -27.96911 -26.88096 -26.26130 -25.83065 -23.95867 -22.65671 -21.57600 -20.81721 -19.95117 -19.44646 -18.41855 -17.97365 -17.64495 -16.97371 -16.81848 -16.68412 -16.16446 -15.69002 -15.61539 -15.26376 -14.96844 -14.86451 -14.62567 -14.52104 -14.35989 -14.01350 -13.81523 -13.78370 -13.42434 -13.29614 -13.13908 -13.02311 -12.95549 -12.91369 -12.78089 -12.74471 -12.51872 -12.27691 -12.02498 -11.78731 -11.53390 -11.41056 -11.25769 -11.13649 -10.83552 -10.46983 -10.06639 -9.71889 -9.44922 -8.62759 -7.84325 -5.29858 0.77003 1.49564 1.50826 1.52392 1.57879 1.59108 1.71354 1.99670 2.53845 3.25680 3.37131 3.40146 3.54620 3.58929 3.73564 3.86889 3.99215 4.07743 4.22211 4.29083 4.34913 4.38756 4.45781 4.46663 4.52470 4.59421 4.63252 4.65219 4.70506 4.75122 4.81268 4.82643 4.85383 4.91921 4.95143 5.05422 5.05578 5.17380 5.22652 5.24623 5.38650 5.40159 5.57331 5.68846 5.76266 5.84153 6.06969 6.43122 6.74099 6.75728 7.07216 7.19158 7.90849 8.41318 9.20904 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002264 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.266817 B =12362.397037 C =12687.751264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.057 3.943 3 C -0.275 4.275 4 C 0.098 3.902 5 C -0.062 4.062 6 C 0.539 3.461 7 O -0.589 6.589 8 N -0.639 5.639 9 C 0.119 3.881 10 C -0.079 4.079 11 C 0.108 3.892 12 C -0.090 4.090 13 C 0.142 3.858 14 N -0.607 5.607 15 C -0.261 4.261 16 H 0.065 0.935 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.280 1.280 23 C 0.174 3.826 24 C -0.108 4.108 25 N -0.376 5.376 26 C 0.092 3.908 27 N -0.334 5.334 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.000 1.000 42 H 0.249 0.751 43 H 0.055 0.945 44 H -0.009 1.009 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.092 0.908 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 -4.978 -18.559 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.304 4.304 4 C -0.030 4.030 5 C -0.103 4.103 6 C 0.329 3.671 7 O -0.469 6.469 8 N -0.373 5.373 9 C -0.002 4.002 10 C -0.080 4.080 11 C -0.015 4.015 12 C -0.129 4.129 13 C 0.016 3.984 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.200 1.200 21 H -0.223 1.223 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.147 4.147 25 N -0.159 5.159 26 C -0.049 4.049 27 N -0.158 5.158 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.018 0.982 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.009 0.991 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.945 -6.607 -18.025 24.329 hybrid contribution 1.031 1.011 1.220 1.891 sum -13.914 -5.596 -16.805 22.524 Atomic orbital electron populations 1.20273 0.84584 1.04380 1.03494 1.22876 0.98508 0.90574 0.98847 1.21368 0.91257 1.00433 1.17387 1.20680 0.96870 0.84553 1.00940 1.20269 0.95200 1.01258 0.93536 1.20450 0.77639 0.77540 0.91443 1.90749 1.50913 1.56955 1.48297 1.49697 1.27613 1.47502 1.12530 1.23283 0.82449 0.99415 0.95068 1.21537 0.92670 0.96941 0.96820 1.23066 0.90427 0.97953 0.90045 1.21500 0.98202 0.95187 0.98004 1.20997 0.93821 0.88876 0.94690 1.44298 1.06200 1.01065 1.81528 1.19461 0.85197 1.08474 1.25965 0.91736 1.25775 1.01669 1.00568 0.96589 1.70182 1.35499 1.21602 1.30751 0.85386 0.80864 0.76923 0.77526 1.20016 1.22335 1.20550 1.20641 0.93452 0.88597 0.92488 1.21824 0.98691 0.95651 0.98547 1.48619 1.05773 1.04658 1.56814 1.22099 0.83143 0.94773 1.04861 1.77203 0.87219 1.23918 1.27453 0.90312 0.88365 0.90562 0.82489 0.84820 0.83049 0.87272 0.86777 0.89155 0.93607 0.91656 0.90590 0.93157 0.98247 0.94180 0.92644 0.99052 0.91291 0.90154 0.88085 0.88985 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.45 71.24 0.74 -0.37 16 2 C 0.06 1.40 7.22 43.10 0.31 1.71 16 3 C -0.28 -6.49 10.65 21.99 0.23 -6.25 16 4 C 0.10 2.22 5.42 41.41 0.22 2.45 16 5 C -0.06 -0.98 5.63 29.10 0.16 -0.82 16 6 C 0.54 13.56 8.07 87.66 0.71 14.27 16 7 O -0.59 -21.48 16.81 -3.01 -0.05 -21.54 16 8 N -0.64 -14.58 3.46 -858.58 -2.97 -17.56 16 9 C 0.12 1.92 7.56 83.21 0.63 2.55 16 10 C -0.08 -2.01 0.83 -52.60 -0.04 -2.06 16 11 C 0.11 3.03 7.57 83.32 0.63 3.66 16 12 C -0.09 -2.58 5.25 30.56 0.16 -2.42 16 13 C 0.14 5.63 6.41 86.42 0.55 6.18 16 14 N -0.61 -28.94 2.96 -698.63 -2.07 -31.01 16 15 C -0.26 -13.83 9.56 84.03 0.80 -13.03 16 16 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 17 C -0.05 -2.75 4.89 84.86 0.42 -2.34 16 18 N -0.93 -54.14 11.21 21.65 0.24 -53.89 16 19 Si 0.96 43.66 29.59 68.60 2.03 45.69 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 C 0.17 7.71 5.27 86.42 0.46 8.17 16 24 C -0.11 -3.25 5.31 30.56 0.16 -3.09 16 25 N -0.38 -9.13 4.01 -356.03 -1.43 -10.55 16 26 C 0.09 1.48 11.06 127.77 1.41 2.89 16 27 N -0.33 -9.35 12.58 -47.38 -0.60 -9.95 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.11 8.14 -2.38 -0.02 1.10 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.13 1.32 7.49 -2.39 -0.02 1.30 16 33 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.14 8.10 -2.38 -0.02 1.13 16 35 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.09 2.40 8.06 -2.39 -0.02 2.38 16 37 H 0.05 1.58 7.53 -2.39 -0.02 1.56 16 38 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 41 H 0.00 -0.02 7.60 -2.39 -0.02 -0.04 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.06 2.84 5.97 -2.39 -0.01 2.83 16 44 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.09 1.32 7.55 -2.39 -0.02 1.30 16 49 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.72 394.99 3.65 -75.07 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.93 Total: 12.23 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 7.57 Total: 11.50 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -6.82 Total: -122.96 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.72 3.65 -75.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050589937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.770 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds