Wall clock time and date at job start Tue Mar 31 2020 18:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30841 * 125.90101 * 2 1 4 4 N 1.40083 * 108.20833 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.04166 * 180.02562 * 4 3 2 6 6 C 1.34958 * 107.92260 * 359.76151 * 4 3 2 7 7 C 1.35315 * 107.74476 * 0.38763 * 6 4 3 8 8 C 1.50696 * 126.03746 * 179.87567 * 7 6 4 9 9 C 1.50706 * 109.47259 * 264.68785 * 8 7 6 10 10 O 1.21283 * 119.99503 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72770 * 9 8 7 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.88031 * 26.83164 * 12 11 9 14 14 C 1.53955 * 113.66014 * 255.49450 * 12 11 9 15 15 C 1.53954 * 87.29002 * 270.26282 * 14 12 11 16 16 H 1.08996 * 113.66362 * 89.74065 * 15 14 12 17 17 N 1.46502 * 113.65548 * 220.79502 * 15 14 12 18 18 C 1.36942 * 119.99889 * 255.49093 * 17 15 14 19 19 H 1.07999 * 119.99316 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99858 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00216 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99953 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47020 * 120.00056 * 22 20 18 25 25 H 1.48495 * 109.47617 * 240.00154 * 22 20 18 26 26 C 1.52898 * 113.66354 * 158.30367 * 12 11 9 27 27 C 1.52909 * 121.14415 * 323.85115 * 26 12 11 28 28 C 1.53951 * 86.78533 * 209.37634 * 27 26 12 29 29 C 1.52911 * 121.14175 * 215.28460 * 26 12 11 30 30 H 1.09005 * 109.46978 * 270.02517 * 1 2 3 31 31 H 1.09007 * 109.47275 * 30.01797 * 1 2 3 32 32 H 1.08997 * 109.47749 * 150.02262 * 1 2 3 33 33 H 1.08995 * 109.46952 * 89.97386 * 5 4 3 34 34 H 1.09002 * 109.47013 * 209.98131 * 5 4 3 35 35 H 1.09002 * 109.46607 * 329.97766 * 5 4 3 36 36 H 1.07999 * 126.12486 * 180.23710 * 6 4 3 37 37 H 1.09001 * 109.47545 * 144.69126 * 8 7 6 38 38 H 1.08998 * 109.47669 * 24.69068 * 8 7 6 39 39 H 0.96998 * 120.00525 * 359.97438 * 11 9 8 40 40 H 1.09002 * 113.57996 * 24.86116 * 14 12 11 41 41 H 1.08997 * 113.57902 * 155.65841 * 14 12 11 42 42 H 0.96999 * 120.00419 * 75.49852 * 17 15 14 43 43 H 0.96997 * 120.00005 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.66146 * 323.84998 * 27 26 12 45 45 H 1.09002 * 113.66047 * 94.90220 * 27 26 12 46 46 H 1.09002 * 113.57722 * 270.13572 * 28 27 26 47 47 H 1.08997 * 113.58317 * 139.33943 * 28 27 26 48 48 H 1.09001 * 113.66165 * 265.10490 * 29 26 12 49 49 H 1.08996 * 113.65895 * 36.15118 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6141 -0.7154 0.0063 7 6 2.3271 -1.1330 0.0005 8 6 1.8598 -2.5657 0.0011 9 6 1.5864 -3.0056 -1.4141 10 8 1.7548 -2.2319 -2.3328 11 7 1.1604 -4.2605 -1.6594 12 6 0.8951 -4.6883 -3.0352 13 1 1.4816 -4.1377 -3.7708 14 6 -0.6035 -4.7729 -3.3778 15 6 -0.5566 -6.2339 -2.8947 16 1 -0.7672 -6.3501 -1.8316 17 7 -1.3267 -7.1555 -3.7337 18 6 -2.5370 -7.6272 -3.3002 19 1 -2.9239 -7.3195 -2.3400 20 6 -3.2664 -8.5008 -4.0949 21 7 -2.7946 -8.8762 -5.2648 22 14 -4.9171 -9.1448 -3.5032 23 1 -5.2195 -8.5762 -2.1651 24 1 -5.9776 -8.7436 -4.4623 25 1 -4.8668 -10.6262 -3.4122 26 6 0.9361 -6.2049 -3.2251 27 6 1.9333 -7.0716 -2.4553 28 6 1.8931 -8.0329 -3.6570 29 6 1.4725 -6.8261 -4.5153 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5134 33 1 5.0820 1.7158 1.0291 34 1 5.6097 0.9980 -0.5119 35 1 4.5567 2.4331 -0.5128 36 1 4.4890 -1.3486 0.0118 37 1 0.9468 -2.6500 0.5905 38 1 2.6326 -3.1998 0.4358 39 1 1.0302 -4.8808 -0.9251 40 1 -1.2291 -4.1291 -2.7596 41 1 -0.8137 -4.6723 -4.4426 42 1 -0.9793 -7.4317 -4.5962 43 1 -3.3045 -9.4863 -5.8203 44 1 2.9030 -6.5963 -2.3074 45 1 1.5254 -7.4990 -1.5393 46 1 1.1228 -8.8000 -3.5762 47 1 2.8689 -8.4387 -3.9237 48 1 0.6965 -7.0573 -5.2450 49 1 2.3127 -6.2818 -4.9464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078647146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:21 Heat of formation + Delta-G solvation = 95.326610 kcal Electronic energy + Delta-G solvation = -28621.349374 eV Core-core repulsion = 24779.892548 eV Total energy + Delta-G solvation = -3841.456827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43922 -40.51545 -38.74469 -34.98304 -34.31148 -33.97853 -32.47782 -31.77676 -29.98189 -29.70150 -27.78416 -25.46409 -25.18052 -24.41756 -24.09630 -22.23290 -21.21633 -20.64210 -19.95957 -19.52933 -17.92901 -17.25906 -16.81377 -16.69247 -15.83920 -15.61653 -15.21394 -15.02693 -14.76106 -14.29651 -14.17322 -13.88736 -13.66180 -13.51979 -13.27227 -13.07024 -12.72946 -12.51218 -12.44955 -12.27646 -12.21984 -12.01929 -11.88705 -11.70004 -11.62176 -11.32389 -10.89428 -10.80978 -10.60107 -10.58862 -10.14099 -10.10633 -9.79953 -9.75095 -9.57622 -9.37908 -9.30103 -8.84357 -8.59861 -8.45095 -6.96039 -5.79706 -3.07946 1.74948 2.35330 2.56701 2.82783 3.41521 3.45759 3.47560 3.49569 4.26871 4.57006 4.59480 4.80692 4.82055 4.84636 4.88004 5.02720 5.08185 5.08884 5.09132 5.17546 5.25010 5.29105 5.31713 5.47102 5.48248 5.53625 5.71813 5.81992 5.88663 5.91034 5.93485 5.97620 6.01560 6.07793 6.13620 6.23612 6.31376 6.44921 6.56417 6.57419 6.59102 6.71796 6.86109 6.89345 6.96315 7.12026 7.61449 7.68713 7.75012 8.39234 8.45861 9.50835 10.08678 10.43287 11.42664 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002509 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.581596 B =11157.510403 C =12165.672253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.301 5.301 4 N -0.379 5.379 5 C 0.105 3.895 6 C 0.066 3.934 7 C -0.214 4.214 8 C -0.061 4.061 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.707 5.707 12 C 0.131 3.869 13 H 0.091 0.909 14 C -0.174 4.174 15 C 0.192 3.808 16 H 0.074 0.926 17 N -0.709 5.709 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.132 4.132 29 C -0.111 4.111 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.078 0.922 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.197 13.847 12.775 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.124 5.124 4 N -0.161 5.161 5 C -0.037 4.037 6 C -0.080 4.080 7 C -0.226 4.226 8 C -0.102 4.102 9 C 0.297 3.703 10 O -0.411 6.411 11 N -0.357 5.357 12 C 0.026 3.974 13 H 0.109 0.891 14 C -0.216 4.216 15 C 0.080 3.920 16 H 0.092 0.908 17 N -0.348 5.348 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.122 4.122 27 C -0.163 4.163 28 C -0.169 4.169 29 C -0.149 4.149 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.188 0.812 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.233 0.767 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.223 0.777 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.330 15.715 12.181 25.729 hybrid contribution -0.734 -1.622 0.221 1.793 sum 15.596 14.093 12.402 24.406 Atomic orbital electron populations 1.20186 0.86772 1.03706 1.02624 1.22164 0.96801 0.90138 0.98216 1.77284 0.86313 1.22717 1.26063 1.48244 1.05544 1.04633 1.57656 1.21804 0.83714 0.95077 1.03057 1.22208 0.98986 0.84975 1.01854 1.19286 0.91921 0.94713 1.16659 1.19898 1.03239 0.92596 0.94498 1.20667 0.76685 0.81615 0.91343 1.90701 1.51443 1.52685 1.46287 1.45647 1.67987 1.13090 1.08990 1.21662 0.97877 0.94802 0.83094 0.89061 1.24255 0.94185 1.01211 1.01987 1.21279 0.87072 0.88811 0.94882 0.90791 1.42417 1.20024 1.52161 1.20231 1.19313 0.95199 1.21055 1.01657 0.91143 1.24742 0.98986 1.00362 0.96764 1.69661 1.38828 1.38182 1.11257 0.86143 0.84028 0.78397 0.77759 1.20569 1.21901 1.21918 1.23513 0.97999 0.92255 0.98386 1.22640 0.98396 0.97612 0.97656 1.22746 1.00964 0.96962 0.96234 1.22458 1.00093 0.96472 0.95860 0.90555 0.90883 0.90372 0.90965 0.89600 0.89405 0.81217 0.88209 0.88533 0.76706 0.92355 0.89789 0.77715 0.93527 0.90984 0.91719 0.89210 0.92529 0.90297 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.21 36.00 0.37 -0.41 16 2 C 0.09 1.20 7.22 -82.41 -0.59 0.60 16 3 N -0.30 -4.10 12.58 33.67 0.42 -3.67 16 4 N -0.38 -4.13 4.01 -68.16 -0.27 -4.41 16 5 C 0.11 0.64 11.47 59.85 0.69 1.33 16 6 C 0.07 0.67 11.40 -17.22 -0.20 0.48 16 7 C -0.21 -2.47 4.59 -105.06 -0.48 -2.96 16 8 C -0.06 -0.58 5.82 -29.03 -0.17 -0.74 16 9 C 0.51 6.69 7.82 -10.98 -0.09 6.60 16 10 O -0.54 -9.41 15.67 5.56 0.09 -9.32 16 11 N -0.71 -8.75 5.07 -53.37 -0.27 -9.02 16 12 C 0.13 1.99 4.08 -67.48 -0.28 1.72 16 13 H 0.09 1.53 7.54 -51.93 -0.39 1.13 16 14 C -0.17 -3.09 7.68 -25.74 -0.20 -3.29 16 15 C 0.19 3.59 4.28 -67.48 -0.29 3.30 16 16 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 17 N -0.71 -16.88 5.35 -52.99 -0.28 -17.17 16 18 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C -0.12 -1.85 0.91 -154.71 -0.14 -1.99 16 27 C -0.13 -1.70 7.43 -26.28 -0.20 -1.89 16 28 C -0.13 -1.98 8.08 -25.75 -0.21 -2.19 16 29 C -0.11 -1.76 7.45 -26.28 -0.20 -1.95 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 4.03 8.54 -40.82 -0.35 3.68 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.39 9.79 5.86 -40.82 -0.24 9.55 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.45 6.42 -51.93 -0.33 1.11 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 403.12 15.07 6.08 6.08 Total: -1.00 -34.81 403.12 -8.80 -43.60 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -8.03 Total: 12.10 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.22 Total: -8.44 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.32 Total: -60.99 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.81 -8.80 -43.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.928 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds