Wall clock time and date at job start Tue Mar 31 2020 18:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30841 * 125.90101 * 2 1 4 4 N 1.40083 * 108.20833 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.04166 * 180.02562 * 4 3 2 6 6 C 1.34958 * 107.92260 * 359.76151 * 4 3 2 7 7 C 1.35315 * 107.74476 * 0.38763 * 6 4 3 8 8 C 1.50696 * 126.03746 * 179.87567 * 7 6 4 9 9 C 1.50706 * 109.47259 * 264.68785 * 8 7 6 10 10 O 1.21283 * 119.99503 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72770 * 9 8 7 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.88031 * 26.83164 * 12 11 9 14 14 C 1.53955 * 113.66014 * 255.49450 * 12 11 9 15 15 C 1.53954 * 87.29002 * 270.26282 * 14 12 11 16 16 H 1.08996 * 113.66362 * 89.74065 * 15 14 12 17 17 N 1.46502 * 113.65548 * 220.79502 * 15 14 12 18 18 C 1.36942 * 119.99889 * 255.49093 * 17 15 14 19 19 H 1.07999 * 119.99316 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99858 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00216 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99953 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47020 * 120.00056 * 22 20 18 25 25 H 1.48495 * 109.47617 * 240.00154 * 22 20 18 26 26 C 1.52898 * 113.66354 * 158.30367 * 12 11 9 27 27 C 1.52909 * 121.14415 * 323.85115 * 26 12 11 28 28 C 1.53951 * 86.78533 * 209.37634 * 27 26 12 29 29 C 1.52911 * 121.14175 * 215.28460 * 26 12 11 30 30 H 1.09005 * 109.46978 * 270.02517 * 1 2 3 31 31 H 1.09007 * 109.47275 * 30.01797 * 1 2 3 32 32 H 1.08997 * 109.47749 * 150.02262 * 1 2 3 33 33 H 1.08995 * 109.46952 * 89.97386 * 5 4 3 34 34 H 1.09002 * 109.47013 * 209.98131 * 5 4 3 35 35 H 1.09002 * 109.46607 * 329.97766 * 5 4 3 36 36 H 1.07999 * 126.12486 * 180.23710 * 6 4 3 37 37 H 1.09001 * 109.47545 * 144.69126 * 8 7 6 38 38 H 1.08998 * 109.47669 * 24.69068 * 8 7 6 39 39 H 0.96998 * 120.00525 * 359.97438 * 11 9 8 40 40 H 1.09002 * 113.57996 * 24.86116 * 14 12 11 41 41 H 1.08997 * 113.57902 * 155.65841 * 14 12 11 42 42 H 0.96999 * 120.00419 * 75.49852 * 17 15 14 43 43 H 0.96997 * 120.00005 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.66146 * 323.84998 * 27 26 12 45 45 H 1.09002 * 113.66047 * 94.90220 * 27 26 12 46 46 H 1.09002 * 113.57722 * 270.13572 * 28 27 26 47 47 H 1.08997 * 113.58317 * 139.33943 * 28 27 26 48 48 H 1.09001 * 113.66165 * 265.10490 * 29 26 12 49 49 H 1.08996 * 113.65895 * 36.15118 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6141 -0.7154 0.0063 7 6 2.3271 -1.1330 0.0005 8 6 1.8598 -2.5657 0.0011 9 6 1.5864 -3.0056 -1.4141 10 8 1.7548 -2.2319 -2.3328 11 7 1.1604 -4.2605 -1.6594 12 6 0.8951 -4.6883 -3.0352 13 1 1.4816 -4.1377 -3.7708 14 6 -0.6035 -4.7729 -3.3778 15 6 -0.5566 -6.2339 -2.8947 16 1 -0.7672 -6.3501 -1.8316 17 7 -1.3267 -7.1555 -3.7337 18 6 -2.5370 -7.6272 -3.3002 19 1 -2.9239 -7.3195 -2.3400 20 6 -3.2664 -8.5008 -4.0949 21 7 -2.7946 -8.8762 -5.2648 22 14 -4.9171 -9.1448 -3.5032 23 1 -5.2195 -8.5762 -2.1651 24 1 -5.9776 -8.7436 -4.4623 25 1 -4.8668 -10.6262 -3.4122 26 6 0.9361 -6.2049 -3.2251 27 6 1.9333 -7.0716 -2.4553 28 6 1.8931 -8.0329 -3.6570 29 6 1.4725 -6.8261 -4.5153 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8899 -0.5141 32 1 -0.3634 -0.8901 -0.5134 33 1 5.0820 1.7158 1.0291 34 1 5.6097 0.9980 -0.5119 35 1 4.5567 2.4331 -0.5128 36 1 4.4890 -1.3486 0.0118 37 1 0.9468 -2.6500 0.5905 38 1 2.6326 -3.1998 0.4358 39 1 1.0302 -4.8808 -0.9251 40 1 -1.2291 -4.1291 -2.7596 41 1 -0.8137 -4.6723 -4.4426 42 1 -0.9793 -7.4317 -4.5962 43 1 -3.3045 -9.4863 -5.8203 44 1 2.9030 -6.5963 -2.3074 45 1 1.5254 -7.4990 -1.5393 46 1 1.1228 -8.8000 -3.5762 47 1 2.8689 -8.4387 -3.9237 48 1 0.6965 -7.0573 -5.2450 49 1 2.3127 -6.2818 -4.9464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078647146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:20 Heat of formation + Delta-G solvation = 72.278596 kcal Electronic energy + Delta-G solvation = -28622.348811 eV Core-core repulsion = 24779.892548 eV Total energy + Delta-G solvation = -3842.456264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24046 -41.78477 -39.86446 -36.30994 -35.69412 -35.03905 -33.79650 -32.82701 -31.60023 -30.51443 -28.63810 -26.67565 -26.50131 -25.67923 -25.40700 -23.75383 -22.25783 -21.57437 -21.11895 -20.38205 -19.57095 -18.73248 -17.92380 -17.53462 -17.04384 -16.67681 -16.34288 -16.31481 -16.05338 -15.60206 -15.37878 -15.06458 -14.80215 -14.36879 -14.24361 -14.06232 -13.93426 -13.75074 -13.47076 -13.27598 -13.17973 -13.10870 -12.98958 -12.90866 -12.85787 -12.76141 -12.58230 -12.43863 -12.08111 -11.88146 -11.83114 -11.40758 -11.24700 -11.14418 -10.85693 -10.75978 -10.63461 -10.11382 -9.79975 -9.22692 -8.92199 -7.91336 -5.18387 0.98847 1.48543 1.49450 1.58801 1.68103 1.74968 1.82933 2.44289 2.58552 3.40193 3.54324 3.61388 3.73856 3.82078 3.94345 3.98430 4.03981 4.07984 4.18189 4.23752 4.31049 4.37898 4.44796 4.45648 4.52286 4.64687 4.68641 4.71011 4.78277 4.79223 4.83218 4.91868 4.94774 5.01703 5.09369 5.14066 5.14811 5.17399 5.20296 5.23652 5.35180 5.53315 5.64059 5.68129 5.77300 5.78993 6.21547 6.31119 6.77583 6.80805 7.37939 7.47354 8.16045 8.38542 9.32130 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002509 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.581596 B =11157.510403 C =12165.672253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.071 3.929 3 N -0.344 5.344 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.068 3.932 7 C -0.238 4.238 8 C -0.050 4.050 9 C 0.513 3.487 10 O -0.583 6.583 11 N -0.695 5.695 12 C 0.152 3.848 13 H 0.080 0.920 14 C -0.175 4.175 15 C 0.180 3.820 16 H 0.084 0.916 17 N -0.722 5.722 18 C -0.235 4.235 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.295 1.295 26 C -0.110 4.110 27 C -0.106 4.106 28 C -0.131 4.131 29 C -0.116 4.116 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.206 0.794 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.414 0.586 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.376 0.624 43 H 0.249 0.751 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.282 13.893 15.493 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 N -0.168 5.168 4 N -0.166 5.166 5 C -0.045 4.045 6 C -0.078 4.078 7 C -0.250 4.250 8 C -0.091 4.091 9 C 0.301 3.699 10 O -0.463 6.463 11 N -0.346 5.346 12 C 0.046 3.954 13 H 0.098 0.902 14 C -0.217 4.217 15 C 0.070 3.930 16 H 0.101 0.899 17 N -0.360 5.360 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.227 1.227 25 H -0.222 1.222 26 C -0.112 4.112 27 C -0.143 4.143 28 C -0.169 4.169 29 C -0.154 4.154 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.223 0.777 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.251 0.749 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.210 0.790 43 H 0.058 0.942 44 H 0.119 0.881 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.433 15.792 14.976 28.521 hybrid contribution -1.302 -1.520 -0.632 2.099 sum 17.131 14.272 14.344 26.513 Atomic orbital electron populations 1.20200 0.86183 1.02999 1.03688 1.22560 0.97655 0.90825 0.98412 1.77194 0.87969 1.23898 1.27734 1.48643 1.05544 1.05603 1.56777 1.22145 0.82921 0.94793 1.04597 1.22839 0.99881 0.85064 1.00057 1.19612 0.92359 0.95336 1.17651 1.19944 1.05339 0.91957 0.91858 1.21362 0.75217 0.80828 0.92455 1.90693 1.53494 1.53923 1.48156 1.45522 1.67542 1.13504 1.08068 1.21265 0.95252 0.94295 0.84631 0.90222 1.24128 0.96635 1.00455 1.00494 1.21573 0.88865 0.88001 0.94576 0.89850 1.42590 1.19898 1.53010 1.20523 1.19708 0.95918 1.19682 1.01402 0.90454 1.25505 1.02478 1.01689 0.97237 1.69818 1.40155 1.39456 1.12612 0.85145 0.79966 0.77416 0.77684 1.18867 1.22689 1.22226 1.23264 0.96145 0.92725 0.99063 1.22608 0.98800 0.95911 0.96969 1.22660 1.01006 0.96118 0.97099 1.22523 0.99910 0.97529 0.95423 0.88575 0.91686 0.90881 0.89181 0.86998 0.89838 0.77688 0.86300 0.84830 0.74886 0.92517 0.92200 0.78995 0.94236 0.88106 0.90811 0.92550 0.90195 0.93709 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.21 71.23 0.73 -0.77 16 2 C 0.07 1.77 7.22 43.10 0.31 2.08 16 3 N -0.34 -9.24 12.58 -47.39 -0.60 -9.84 16 4 N -0.38 -7.73 4.01 -369.56 -1.48 -9.21 16 5 C 0.10 0.98 11.47 127.77 1.47 2.45 16 6 C 0.07 1.21 11.40 83.54 0.95 2.16 16 7 C -0.24 -4.96 4.59 -20.15 -0.09 -5.05 16 8 C -0.05 -0.77 5.82 29.10 0.17 -0.60 16 9 C 0.51 12.13 7.82 87.66 0.69 12.82 16 10 O -0.58 -19.86 15.67 -3.04 -0.05 -19.91 16 11 N -0.70 -15.21 5.07 -441.15 -2.24 -17.44 16 12 C 0.15 4.41 4.08 45.28 0.18 4.59 16 13 H 0.08 2.58 7.54 -2.39 -0.02 2.57 16 14 C -0.17 -6.23 7.68 31.23 0.24 -5.99 16 15 C 0.18 6.64 4.28 45.28 0.19 6.83 16 16 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 17 N -0.72 -35.02 5.35 -321.55 -1.72 -36.74 16 18 C -0.24 -12.67 9.98 84.03 0.84 -11.83 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.97 -58.92 13.06 21.65 0.28 -58.63 16 22 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 C -0.11 -3.25 0.91 -52.31 -0.05 -3.29 16 27 C -0.11 -2.50 7.43 30.89 0.23 -2.27 16 28 C -0.13 -3.76 8.08 31.23 0.25 -3.51 16 29 C -0.12 -3.61 7.45 30.88 0.23 -3.38 16 30 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.54 7.96 -2.39 -0.02 1.52 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.12 1.39 8.09 -2.39 -0.02 1.37 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.41 6.70 8.54 -92.71 -0.79 5.91 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.38 19.82 5.86 -92.71 -0.54 19.27 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.04 1.71 6.42 -2.39 -0.02 1.69 16 49 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -78.88 403.12 2.66 -76.23 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.37 Total: 37.41 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 6.81 Total: -9.65 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -5.76 Total: -131.87 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.88 2.66 -76.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.506 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds