Wall clock time and date at job start Tue Mar 31 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39868 * 125.89796 * 2 1 4 4 C 1.35316 * 107.92272 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.13134 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47277 * 84.97480 * 5 4 3 7 7 O 1.21284 * 120.00151 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00406 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00490 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.88165 * 23.65068 * 9 8 6 11 11 C 1.53945 * 113.66065 * 252.18837 * 9 8 6 12 12 C 1.53952 * 87.29345 * 220.79080 * 11 9 8 13 13 H 1.09001 * 113.66613 * 270.25856 * 12 11 9 14 14 N 1.46504 * 113.74376 * 139.21766 * 12 11 9 15 15 C 1.36937 * 120.00109 * 107.77700 * 14 12 11 16 16 H 1.08007 * 119.99865 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00451 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99228 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00313 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46915 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47308 * 120.00132 * 19 17 15 22 22 H 1.48501 * 109.46753 * 240.00049 * 19 17 15 23 23 C 1.52905 * 113.66568 * 154.99720 * 9 8 6 24 24 C 1.52912 * 121.13398 * 13.65631 * 23 9 8 25 25 C 1.53951 * 86.78173 * 209.37825 * 24 23 9 26 26 C 1.52899 * 121.14076 * 265.09392 * 23 9 8 27 27 N 1.34954 * 107.74368 * 0.02562 * 4 3 2 28 28 C 1.46494 * 126.03475 * 179.73518 * 27 4 3 29 29 N 1.30837 * 125.90056 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46725 * 89.99511 * 1 2 3 31 31 H 1.08998 * 109.46883 * 209.99515 * 1 2 3 32 32 H 1.09001 * 109.47204 * 329.99868 * 1 2 3 33 33 H 1.07999 * 126.04291 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47718 * 204.97601 * 5 4 3 35 35 H 1.09004 * 109.47060 * 324.97912 * 5 4 3 36 36 H 0.97001 * 119.99791 * 359.97438 * 8 6 5 37 37 H 1.08997 * 113.58475 * 335.39605 * 11 9 8 38 38 H 1.09007 * 113.58219 * 106.19185 * 11 9 8 39 39 H 0.97000 * 120.00052 * 287.76870 * 14 12 11 40 40 H 0.97001 * 119.99309 * 180.02562 * 18 17 15 41 41 H 1.08997 * 113.66585 * 323.84683 * 24 23 9 42 42 H 1.09005 * 113.66490 * 94.90899 * 24 23 9 43 43 H 1.09001 * 113.58119 * 270.13148 * 25 24 23 44 44 H 1.08996 * 113.58695 * 139.33947 * 25 24 23 45 45 H 1.09005 * 113.66270 * 265.08943 * 26 23 9 46 46 H 1.08996 * 113.66559 * 36.05231 * 26 23 9 47 47 H 1.09007 * 109.47152 * 90.00174 * 28 27 4 48 48 H 1.09004 * 109.47324 * 209.99797 * 28 27 4 49 49 H 1.08997 * 109.47734 * 329.99813 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0013 6 6 5.1683 1.9940 1.4169 7 8 4.4823 1.5969 2.3349 8 7 6.2287 2.7888 1.6629 9 6 6.5530 3.1724 3.0390 10 1 6.1642 2.4711 3.7774 11 6 6.2420 4.6457 3.3593 12 6 7.5675 4.6795 4.1417 13 1 7.4634 4.4032 5.1909 14 7 8.3338 5.9135 3.9508 15 6 8.4175 6.8311 4.9639 16 1 7.9184 6.6452 5.9035 17 6 9.1440 8.0000 4.7834 18 7 9.7527 8.2263 3.6385 19 14 9.2577 9.2519 6.1651 20 1 8.4904 8.7642 7.3392 21 1 10.6805 9.4405 6.5464 22 1 8.6921 10.5466 5.7077 23 6 8.0257 3.5279 3.2462 24 6 8.9548 3.7727 2.0567 25 6 10.0962 3.2606 2.9539 26 6 9.0274 2.4871 3.7473 27 7 3.6088 -0.6341 0.0004 28 6 4.7899 -1.5007 -0.0047 29 7 2.2742 -1.0598 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9923 2.1598 -0.0004 34 1 5.6758 1.0574 -0.4322 35 1 4.6362 2.4939 -0.5884 36 1 6.7776 3.1061 0.9288 37 1 6.2374 5.2913 2.4811 38 1 5.3613 4.7788 3.9877 39 1 8.7819 6.0806 3.1069 40 1 10.2607 9.0430 3.5125 41 1 8.7489 3.1297 1.2011 42 1 9.0501 4.8241 1.7851 43 1 10.5836 4.0466 3.5308 44 1 10.8044 2.6160 2.4334 45 1 9.1807 2.5113 4.8262 46 1 8.8410 1.4824 3.3681 47 1 5.0871 -1.7158 1.0218 48 1 4.5543 -2.4331 -0.5177 49 1 5.6072 -0.9981 -0.5218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078680821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:31 Heat of formation + Delta-G solvation = 94.075208 kcal Electronic energy + Delta-G solvation = -28589.957658 eV Core-core repulsion = 24748.446566 eV Total energy + Delta-G solvation = -3841.511092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48856 -40.58892 -38.91111 -34.91641 -34.27029 -34.15297 -32.75449 -32.06052 -29.97799 -29.68828 -27.82451 -25.56184 -25.54751 -24.55532 -24.18618 -22.45008 -20.81679 -20.51751 -20.29144 -19.41926 -18.03081 -17.44569 -16.95953 -16.73093 -16.04637 -15.58825 -15.39281 -15.01601 -14.70700 -14.54007 -14.22777 -13.91548 -13.72488 -13.68539 -13.13649 -13.06277 -12.86738 -12.69609 -12.54299 -12.41674 -12.21685 -12.13908 -12.01290 -11.84431 -11.54617 -11.26536 -10.95276 -10.83499 -10.75033 -10.65645 -10.21624 -10.08396 -10.04711 -9.92789 -9.70881 -9.49904 -9.16590 -8.89785 -8.70293 -8.56828 -7.01540 -5.84332 -3.12563 1.68038 2.33976 2.58902 2.64445 3.29360 3.39336 3.46263 3.47622 4.19937 4.30491 4.53773 4.63524 4.72414 4.77797 4.82986 4.89645 4.92509 5.02605 5.08500 5.13929 5.20220 5.20380 5.21925 5.41160 5.43854 5.53801 5.64318 5.71529 5.74152 5.84534 5.85584 5.93502 5.95593 6.01856 6.06244 6.17482 6.28650 6.35431 6.47390 6.54847 6.56777 6.58958 6.81395 6.85574 6.88251 7.02560 7.56435 7.62398 7.66367 8.22758 8.34664 9.46566 10.02642 10.37649 11.38007 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002401 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.527831 B =11660.555786 C =12486.378254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.071 3.929 3 C -0.254 4.254 4 C 0.108 3.892 5 C -0.083 4.083 6 C 0.513 3.487 7 O -0.531 6.531 8 N -0.710 5.710 9 C 0.131 3.869 10 H 0.109 0.891 11 C -0.174 4.174 12 C 0.192 3.808 13 H 0.081 0.919 14 N -0.705 5.705 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.126 4.126 27 N -0.368 5.368 28 C 0.100 3.900 29 N -0.297 5.297 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -17.087 -11.232 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C -0.283 4.283 4 C -0.020 4.020 5 C -0.125 4.125 6 C 0.297 3.703 7 O -0.407 6.407 8 N -0.361 5.361 9 C 0.026 3.974 10 H 0.127 0.873 11 C -0.216 4.216 12 C 0.079 3.921 13 H 0.099 0.901 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.122 4.122 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.164 4.164 27 N -0.150 5.150 28 C -0.041 4.041 29 N -0.120 5.120 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.836 -18.611 -10.385 23.071 hybrid contribution 0.628 1.850 0.045 1.955 sum -8.207 -16.760 -10.340 21.335 Atomic orbital electron populations 1.20158 0.86739 1.03313 1.02717 1.22251 0.96875 0.90740 0.99578 1.21040 0.90820 0.99793 1.16643 1.20212 0.95934 0.84243 1.01607 1.20310 0.95299 1.00235 0.96635 1.20260 0.80887 0.78755 0.90374 1.90750 1.49587 1.54401 1.45982 1.45962 1.29688 1.50439 1.09963 1.22298 0.95797 0.96698 0.82563 0.87321 1.24271 1.01258 0.94289 1.01776 1.21054 0.89679 0.85808 0.95527 0.90102 1.42347 1.58826 1.16896 1.16336 1.19345 1.26103 0.97656 0.94210 0.91017 1.24740 1.00341 0.98487 0.97213 1.69662 1.37800 1.26968 1.23577 0.86128 0.77267 0.81520 0.81345 1.20510 1.21879 1.21870 1.23616 0.91357 0.98270 0.98946 1.22423 0.95761 1.01836 0.95354 1.22726 0.95751 0.99867 0.98362 1.22699 0.96551 0.96890 1.00241 1.48262 1.05490 1.03953 1.57284 1.21827 0.83930 0.94835 1.03548 1.77268 0.86090 1.22649 1.26017 0.90677 0.91070 0.90395 0.83712 0.87937 0.86157 0.76554 0.90137 0.92121 0.77784 0.93519 0.91213 0.90264 0.89096 0.92565 0.91506 0.91132 0.90667 0.89266 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.23 16 2 C 0.07 0.89 7.22 -82.41 -0.59 0.29 16 3 C -0.25 -3.13 10.65 -40.01 -0.43 -3.55 16 4 C 0.11 1.27 5.42 -82.26 -0.45 0.82 16 5 C -0.08 -0.73 5.99 -29.04 -0.17 -0.91 16 6 C 0.51 6.41 7.82 -10.99 -0.09 6.33 16 7 O -0.53 -9.08 15.63 5.55 0.09 -9.00 16 8 N -0.71 -8.32 5.25 -53.37 -0.28 -8.60 16 9 C 0.13 1.89 4.12 -67.49 -0.28 1.62 16 10 H 0.11 1.71 7.46 -51.93 -0.39 1.32 16 11 C -0.17 -2.94 7.68 -25.75 -0.20 -3.14 16 12 C 0.19 3.59 4.36 -67.48 -0.29 3.30 16 13 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 14 N -0.71 -16.42 5.33 -52.99 -0.28 -16.70 16 15 C -0.24 -6.42 9.97 -15.06 -0.15 -6.57 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 19 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C -0.12 -1.78 1.06 -154.72 -0.16 -1.94 16 24 C -0.12 -1.62 6.77 -26.28 -0.18 -1.80 16 25 C -0.13 -1.87 8.08 -25.75 -0.21 -2.08 16 26 C -0.13 -1.75 7.84 -26.29 -0.21 -1.95 16 27 N -0.37 -4.44 4.01 -63.89 -0.26 -4.69 16 28 C 0.10 0.79 11.27 59.84 0.67 1.47 16 29 N -0.30 -4.09 12.58 33.67 0.42 -3.67 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.10 0.61 6.95 -51.93 -0.36 0.25 16 35 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 3.78 7.03 -40.82 -0.29 3.49 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.39 9.43 5.92 -40.82 -0.24 9.19 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 41 H 0.07 0.77 7.03 -51.93 -0.36 0.41 16 42 H 0.08 1.30 6.42 -51.93 -0.33 0.97 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.44 6.98 -51.93 -0.36 0.08 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -34.07 398.74 -8.85 -42.92 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.80 Total: 11.91 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.45 Total: -8.77 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.33 Total: -59.90 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.07 -8.85 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078680821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.994 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds