Wall clock time and date at job start Tue Mar 31 2020 17:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38819 * 120.41758 * 2 1 4 4 C 1.38784 * 118.50550 * 180.02562 * 3 2 1 5 5 N 1.32125 * 119.16400 * 0.02562 * 4 3 2 6 6 C 1.32439 * 120.77303 * 359.97438 * 5 4 3 7 7 C 1.48531 * 119.18989 * 179.97438 * 6 5 4 8 8 O 1.21471 * 120.00249 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99807 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99851 * 184.47453 * 9 7 6 11 11 C 1.52999 * 109.46956 * 56.88388 * 10 9 7 12 12 N 1.46498 * 109.47270 * 56.64816 * 11 10 9 13 13 C 1.36941 * 120.00210 * 174.99699 * 12 11 10 14 14 H 1.07996 * 119.99459 * 359.97438 * 13 12 11 15 15 C 1.38805 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31623 * 120.00577 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99907 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47266 * 59.99705 * 17 15 13 19 19 H 1.48505 * 109.47384 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47219 * 299.99785 * 17 15 13 21 21 C 1.53005 * 109.46766 * 176.88502 * 10 9 7 22 22 C 1.52998 * 109.47431 * 59.99813 * 21 10 9 23 23 C 1.53001 * 109.46808 * 59.99968 * 22 21 10 24 24 C 1.53006 * 109.47322 * 299.99851 * 23 22 21 25 25 C 1.52997 * 109.47401 * 296.88079 * 10 9 7 26 26 H 1.09004 * 109.46683 * 59.99662 * 25 10 9 27 27 C 1.52991 * 109.47509 * 179.97438 * 25 10 9 28 28 N 1.32099 * 120.41796 * 180.27714 * 2 1 3 29 29 H 1.08994 * 109.47257 * 89.99999 * 1 2 3 30 30 H 1.09000 * 109.47121 * 210.00061 * 1 2 3 31 31 H 1.09002 * 109.46655 * 329.99427 * 1 2 3 32 32 H 1.08001 * 120.75261 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.41655 * 180.02562 * 4 3 2 34 34 H 0.97000 * 119.99785 * 4.47866 * 9 7 6 35 35 H 1.08999 * 109.46685 * 176.64239 * 11 10 9 36 36 H 1.08993 * 109.47339 * 296.63976 * 11 10 9 37 37 H 0.96998 * 119.99944 * 354.98094 * 12 11 10 38 38 H 0.96988 * 120.00521 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.46864 * 299.99477 * 21 10 9 40 40 H 1.08997 * 109.46684 * 180.02562 * 21 10 9 41 41 H 1.08993 * 109.46911 * 300.00225 * 22 21 10 42 42 H 1.08994 * 109.46813 * 179.97438 * 22 21 10 43 43 H 1.09003 * 109.46914 * 179.97438 * 23 22 21 44 44 H 1.09005 * 109.47370 * 59.99751 * 23 22 21 45 45 H 1.08991 * 109.46941 * 300.00402 * 24 23 22 46 46 H 1.08994 * 109.47075 * 180.02562 * 24 23 22 47 47 H 1.08994 * 109.47493 * 180.02562 * 27 25 10 48 48 H 1.08999 * 109.47315 * 300.00739 * 27 25 10 49 49 H 1.09003 * 109.46946 * 59.99839 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1508 -0.0005 5 7 4.2019 -0.0238 -0.0016 6 6 3.5006 -1.1472 -0.0015 7 6 4.2170 -2.4484 -0.0033 8 8 3.5884 -3.4878 -0.0038 9 7 5.5645 -2.4757 -0.0043 10 6 6.2710 -3.7552 -0.1050 11 6 5.8276 -4.4840 -1.3751 12 7 6.0669 -3.6269 -2.5388 13 6 5.8421 -4.1078 -3.8012 14 1 5.4889 -5.1190 -3.9388 15 6 6.0683 -3.2954 -4.9037 16 7 6.4983 -2.0628 -4.7360 17 14 5.7623 -3.9516 -6.6257 18 1 4.3374 -4.3482 -6.7585 19 1 6.0765 -2.8953 -7.6211 20 1 6.6293 -5.1329 -6.8666 21 6 7.7789 -3.5018 -0.1624 22 6 8.2223 -2.7729 1.1076 23 6 7.8958 -3.6334 2.3299 24 6 6.3880 -3.8867 2.3873 25 6 5.9447 -4.6157 1.1172 26 1 4.8704 -4.7960 1.1581 27 6 6.6820 -5.9520 1.0117 28 7 2.1758 -1.1391 -0.0055 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6891 2.1433 0.0004 33 1 4.1745 2.0634 -0.0001 34 1 6.0664 -1.6483 0.0616 35 1 6.3965 -5.4078 -1.4812 36 1 4.7651 -4.7174 -1.3079 37 1 6.3843 -2.7187 -2.4152 38 1 6.6560 -1.4951 -5.5064 39 1 8.0114 -2.8889 -1.0331 40 1 8.3045 -4.4537 -0.2377 41 1 7.6965 -1.8211 1.1825 42 1 9.2965 -2.5929 1.0669 43 1 8.2121 -3.1143 3.2346 44 1 8.4215 -4.5854 2.2549 45 1 5.8623 -2.9349 2.4621 46 1 6.1554 -4.4994 3.2582 47 1 6.4492 -6.5652 1.8822 48 1 6.3658 -6.4711 0.1070 49 1 7.7563 -5.7719 0.9705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318746308.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:40 Heat of formation + Delta-G solvation = 19.666148 kcal Electronic energy + Delta-G solvation = -30363.755408 eV Core-core repulsion = 26519.017697 eV Total energy + Delta-G solvation = -3844.737711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24946 -40.31292 -37.76260 -34.72795 -34.56570 -33.15675 -32.63138 -31.92897 -31.09168 -29.45252 -28.63138 -26.66234 -25.26496 -24.80480 -23.15717 -22.86369 -21.88035 -21.17247 -20.19968 -18.09994 -17.90691 -17.50503 -17.02023 -15.94440 -15.59815 -15.39220 -15.29516 -14.94622 -14.45755 -14.22746 -13.95678 -13.67818 -13.58637 -13.32120 -13.17831 -13.03847 -12.81935 -12.61829 -12.50124 -12.30893 -12.13106 -11.88039 -11.40311 -11.32643 -11.18255 -11.05937 -10.86619 -10.75661 -10.67766 -10.61816 -10.19231 -10.08724 -9.98691 -9.84725 -9.61170 -9.56945 -9.30349 -9.25125 -8.70766 -8.42432 -6.76287 -5.66603 -2.92671 0.52793 1.04304 2.92703 3.11543 3.50020 3.53506 3.55343 3.95843 4.03303 4.25434 4.39740 4.67232 4.81125 4.92055 4.93710 4.95669 4.99515 5.20225 5.29940 5.34537 5.37290 5.40250 5.57760 5.60328 5.62950 5.68382 5.75264 5.76841 5.84256 5.88321 5.90962 6.07289 6.16053 6.25329 6.25408 6.27877 6.29436 6.39645 6.53208 6.60638 6.61141 6.67087 6.82657 6.92800 6.98709 7.19242 7.77995 7.80571 8.11207 8.52775 8.61547 9.63939 10.23241 10.58921 11.56418 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.005757 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.513288 B = 4862.356849 C = 7425.391326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.169 3.831 3 C -0.218 4.218 4 C 0.148 3.852 5 N -0.495 5.495 6 C 0.300 3.700 7 C 0.591 3.409 8 O -0.499 6.499 9 N -0.686 5.686 10 C 0.183 3.817 11 C 0.138 3.862 12 N -0.726 5.726 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.936 5.936 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.101 4.101 26 H 0.090 0.910 27 C -0.147 4.147 28 N -0.470 5.470 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.406 0.594 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.382 0.618 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 6.311 16.936 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.240 4.240 4 C -0.018 4.018 5 N -0.212 5.212 6 C 0.030 3.970 7 C 0.372 3.628 8 O -0.371 6.371 9 N -0.339 5.339 10 C 0.097 3.903 11 C 0.010 3.990 12 N -0.370 5.370 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.212 4.212 16 N -0.585 5.585 17 Si 0.736 3.264 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.120 4.120 26 H 0.108 0.892 27 C -0.205 4.205 28 N -0.186 5.186 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.168 0.832 33 H 0.191 0.809 34 H 0.243 0.757 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.216 0.784 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.537 4.522 16.766 17.722 hybrid contribution -0.307 1.492 -1.183 1.929 sum -3.845 6.014 15.583 17.140 Atomic orbital electron populations 1.20795 0.87506 1.04030 1.03974 1.21849 0.97885 0.87926 0.90152 1.22947 0.96712 1.00525 1.03861 1.23263 0.92148 0.96111 0.90253 1.68315 1.41565 0.98811 1.12539 1.23122 0.87348 0.93289 0.93286 1.17056 0.82433 0.85566 0.77730 1.90726 1.66948 1.31738 1.47694 1.45713 1.04939 1.10387 1.72830 1.20632 0.91377 0.82725 0.95553 1.21178 0.99224 0.93278 0.85340 1.42254 1.80369 1.13845 1.00579 1.19191 1.36201 0.97089 0.83534 0.91418 1.24672 1.02745 0.96161 0.97597 1.69647 1.52831 1.06953 1.29112 0.86302 0.77896 0.77487 0.84753 1.21475 1.21844 1.21339 1.21804 0.93577 1.02222 0.98177 1.21565 1.00695 0.98767 0.94763 1.21576 0.96434 1.00059 0.97588 1.21494 0.95764 1.00196 0.97220 1.21456 1.02079 0.94874 0.93623 0.89183 1.21957 1.00495 0.96262 1.01776 1.68103 1.08799 1.30256 1.11434 0.89427 0.89695 0.90095 0.83241 0.80906 0.75745 0.95090 0.94041 0.78365 0.93763 0.90016 0.90137 0.92194 0.91949 0.92697 0.91708 0.92431 0.92488 0.93097 0.91938 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.22 36.01 0.37 -0.58 16 2 C 0.17 2.21 6.82 -82.26 -0.56 1.65 16 3 C -0.22 -2.29 9.87 -39.16 -0.39 -2.67 16 4 C 0.15 1.75 11.30 -17.22 -0.19 1.55 16 5 N -0.50 -7.78 9.58 -11.12 -0.11 -7.89 16 6 C 0.30 5.48 7.59 -157.08 -1.19 4.29 16 7 C 0.59 11.71 7.27 -12.01 -0.09 11.62 16 8 O -0.50 -11.14 13.13 5.39 0.07 -11.07 16 9 N -0.69 -12.07 3.52 -48.32 -0.17 -12.24 16 10 C 0.18 3.14 0.09 -131.82 -0.01 3.13 16 11 C 0.14 3.02 4.40 -4.04 -0.02 3.00 16 12 N -0.73 -19.02 5.12 -59.92 -0.31 -19.32 16 13 C -0.23 -6.68 9.99 -15.06 -0.15 -6.84 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 16 N -0.94 -28.90 13.06 55.49 0.72 -28.17 16 17 Si 0.90 23.35 29.55 -169.99 -5.02 18.32 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 C -0.12 -1.86 4.38 -26.73 -0.12 -1.97 16 22 C -0.12 -1.49 5.75 -26.73 -0.15 -1.64 16 23 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 24 C -0.11 -1.40 5.29 -26.73 -0.14 -1.54 16 25 C -0.10 -1.52 2.08 -90.62 -0.19 -1.71 16 26 H 0.09 1.59 6.25 -51.93 -0.32 1.26 16 27 C -0.15 -1.98 8.15 37.15 0.30 -1.68 16 28 N -0.47 -8.26 10.07 -7.38 -0.07 -8.34 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.41 6.66 6.53 -40.82 -0.27 6.39 16 35 H 0.03 0.67 6.61 -51.93 -0.34 0.33 16 36 H 0.04 1.02 6.20 -51.93 -0.32 0.70 16 37 H 0.38 10.38 6.56 -40.82 -0.27 10.11 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.48 7.18 -51.93 -0.37 1.10 16 40 H 0.08 1.21 6.43 -51.93 -0.33 0.87 16 41 H 0.06 0.74 6.80 -51.93 -0.35 0.39 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 45 H 0.06 0.79 7.60 -51.93 -0.39 0.39 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.91 6.51 -51.93 -0.34 0.57 16 49 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -35.47 376.82 -9.24 -44.71 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.25 Total: 13.80 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.78 Total: 4.52 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: 0.07 Total: -75.96 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.47 -9.24 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318746308.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.375 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds