Wall clock time and date at job start Tue Mar 31 2020 17:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38822 * 120.41478 * 2 1 4 4 C 1.38789 * 118.50143 * 179.97438 * 3 2 1 5 5 N 1.32123 * 119.16645 * 359.97438 * 4 3 2 6 6 C 1.32449 * 120.77047 * 0.02562 * 5 4 3 7 7 C 1.48536 * 119.18675 * 179.97438 * 6 5 4 8 8 O 1.21471 * 119.99930 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99970 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99998 * 176.44271 * 9 7 6 11 11 C 1.53007 * 109.46980 * 314.07193 * 10 9 7 12 12 N 1.46494 * 109.47115 * 304.57219 * 11 10 9 13 13 C 1.36935 * 120.00145 * 185.74733 * 12 11 10 14 14 H 1.08007 * 119.99905 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00282 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00169 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99773 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47031 * 90.00170 * 17 15 13 19 19 H 1.48504 * 109.47113 * 209.99859 * 17 15 13 20 20 H 1.48494 * 109.47124 * 329.99928 * 17 15 13 21 21 C 1.52996 * 109.47230 * 194.07084 * 10 9 7 22 22 C 1.52994 * 109.47350 * 300.00061 * 21 10 9 23 23 C 1.53002 * 109.47178 * 300.00017 * 22 21 10 24 24 C 1.52996 * 109.47279 * 59.99508 * 23 22 21 25 25 C 1.52994 * 109.47239 * 74.06900 * 10 9 7 26 26 H 1.08998 * 109.47511 * 179.97438 * 25 10 9 27 27 C 1.53003 * 109.47623 * 300.00213 * 25 10 9 28 28 N 1.32094 * 120.41712 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46735 * 270.02001 * 1 2 3 30 30 H 1.09003 * 109.46771 * 30.01855 * 1 2 3 31 31 H 1.08990 * 109.47086 * 150.02147 * 1 2 3 32 32 H 1.07996 * 120.75522 * 359.97438 * 3 2 1 33 33 H 1.07991 * 120.41691 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00186 * 356.43800 * 9 7 6 35 35 H 1.08999 * 109.46640 * 64.57050 * 11 10 9 36 36 H 1.08998 * 109.46859 * 184.56660 * 11 10 9 37 37 H 0.97004 * 120.00064 * 5.74305 * 12 11 10 38 38 H 0.97004 * 120.00025 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47029 * 59.99984 * 21 10 9 40 40 H 1.09002 * 109.47062 * 179.97438 * 21 10 9 41 41 H 1.08998 * 109.46982 * 180.02562 * 22 21 10 42 42 H 1.09002 * 109.47427 * 59.99746 * 22 21 10 43 43 H 1.09002 * 109.46720 * 300.00162 * 23 22 21 44 44 H 1.08996 * 109.47398 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47314 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47124 * 60.00309 * 24 23 22 47 47 H 1.08997 * 109.46753 * 66.91105 * 27 25 10 48 48 H 1.08992 * 109.47465 * 186.91334 * 27 25 10 49 49 H 1.08996 * 109.46936 * 306.91899 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5970 1.1508 0.0005 5 7 4.2020 -0.0237 0.0016 6 6 3.5006 -1.1472 0.0015 7 6 4.2170 -2.4484 0.0021 8 8 3.5884 -3.4878 0.0026 9 7 5.5645 -2.4758 0.0021 10 6 6.2711 -3.7566 0.0814 11 6 5.6395 -4.6207 1.1748 12 7 5.6393 -3.8835 2.4407 13 6 5.2294 -4.5005 3.5924 14 1 4.9058 -5.5307 3.5673 15 6 5.2297 -3.8021 4.7920 16 7 4.8352 -4.3951 5.8988 17 14 5.7900 -2.0206 4.8354 18 1 4.6250 -1.1296 4.6033 19 1 6.3856 -1.7212 6.1624 20 1 6.8048 -1.7950 3.7751 21 6 7.7432 -3.5071 0.4153 22 6 8.3748 -2.6431 -0.6779 23 6 8.2723 -3.3662 -2.0224 24 6 6.8002 -3.6157 -2.3563 25 6 6.1685 -4.4798 -1.2629 26 1 6.6947 -5.4325 -1.2041 27 6 4.6964 -4.7293 -1.5969 28 7 2.1759 -1.1391 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6891 2.1433 -0.0004 33 1 4.1745 2.0633 0.0010 34 1 6.0664 -1.6474 -0.0504 35 1 4.6144 -4.8661 0.8970 36 1 6.2146 -5.5395 1.2894 37 1 5.9296 -2.9582 2.4631 38 1 4.8351 -3.9069 6.7370 39 1 7.8162 -2.9920 1.3731 40 1 8.2688 -4.4602 0.4748 41 1 9.4237 -2.4658 -0.4402 42 1 7.8491 -1.6901 -0.7370 43 1 8.7980 -4.3192 -1.9633 44 1 8.7227 -2.7508 -2.8012 45 1 6.7272 -4.1313 -3.3139 46 1 6.2744 -2.6627 -2.4153 47 1 4.1982 -3.7767 -1.7768 48 1 4.6266 -5.3502 -2.4900 49 1 4.2157 -5.2387 -0.7618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318746310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:44 Heat of formation + Delta-G solvation = 39.649802 kcal Electronic energy + Delta-G solvation = -30807.381281 eV Core-core repulsion = 26963.510127 eV Total energy + Delta-G solvation = -3843.871154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41481 -40.50900 -37.67987 -34.80064 -34.69189 -33.19942 -32.85946 -32.29207 -31.31566 -29.77654 -28.66645 -26.53803 -25.46644 -25.12552 -23.25542 -22.61711 -21.32403 -21.12336 -20.45242 -18.85483 -17.96663 -17.75640 -17.50727 -16.05643 -15.97945 -15.41778 -15.09723 -14.95033 -14.47692 -14.35959 -14.06539 -13.83353 -13.69359 -13.55510 -13.40224 -13.13734 -12.85088 -12.61296 -12.54744 -12.35499 -11.90603 -11.80419 -11.57804 -11.39969 -11.33110 -11.17793 -10.96218 -10.84252 -10.76845 -10.71012 -10.41405 -10.16109 -10.01376 -9.71692 -9.64163 -9.49338 -9.43875 -9.37403 -8.68646 -8.43627 -7.03218 -5.66364 -2.98256 0.42808 0.93604 2.83940 3.00084 3.38862 3.42732 3.46904 3.85404 3.91941 4.16495 4.30252 4.66584 4.72870 4.80970 4.82203 4.84028 4.85655 5.10072 5.18439 5.21666 5.24892 5.33677 5.48165 5.54640 5.57504 5.60311 5.65370 5.70680 5.71680 5.76479 5.87963 6.01623 6.05911 6.12115 6.15720 6.19946 6.25369 6.33729 6.39130 6.45988 6.56931 6.61197 6.77037 6.82717 7.00165 7.18986 7.68020 7.99607 8.12407 8.51642 8.55292 9.33373 10.05954 10.26920 11.52881 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.007648 B = 0.006558 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.270065 B = 4268.397369 C = 6354.165621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.172 3.828 3 C -0.219 4.219 4 C 0.146 3.854 5 N -0.503 5.503 6 C 0.298 3.702 7 C 0.580 3.420 8 O -0.471 6.471 9 N -0.695 5.695 10 C 0.176 3.824 11 C 0.135 3.865 12 N -0.749 5.749 13 C -0.227 4.227 14 H 0.090 0.910 15 C 0.001 3.999 16 N -0.937 5.937 17 Si 0.880 3.120 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.092 4.092 26 H 0.077 0.923 27 C -0.142 4.142 28 N -0.466 5.466 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.173 0.827 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.358 0.642 38 H 0.257 0.743 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.031 0.969 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 12.067 -19.358 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.025 3.975 3 C -0.241 4.241 4 C -0.020 4.020 5 N -0.221 5.221 6 C 0.028 3.972 7 C 0.361 3.639 8 O -0.341 6.341 9 N -0.349 5.349 10 C 0.091 3.909 11 C 0.008 3.992 12 N -0.395 5.395 13 C -0.357 4.357 14 H 0.108 0.892 15 C -0.194 4.194 16 N -0.586 5.586 17 Si 0.711 3.289 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.112 4.112 26 H 0.096 0.904 27 C -0.199 4.199 28 N -0.182 5.182 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.168 0.832 33 H 0.190 0.810 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.190 0.810 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.050 0.950 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.144 10.188 -19.189 21.727 hybrid contribution 0.224 2.835 0.363 2.867 sum 0.368 13.023 -18.827 22.895 Atomic orbital electron populations 1.20814 0.87355 1.04136 1.04101 1.21893 0.98003 0.87866 0.89778 1.22957 0.96657 1.00618 1.03828 1.23247 0.92239 0.96047 0.90470 1.68311 1.41716 0.98905 1.13161 1.23217 0.87497 0.93254 0.93259 1.16988 0.82605 0.85526 0.78804 1.90815 1.67277 1.30719 1.45295 1.45704 1.05024 1.10031 1.74123 1.20775 0.91525 0.83174 0.95472 1.21339 1.00537 0.93141 0.84196 1.42588 1.80657 1.11899 1.04314 1.19075 1.34696 0.97543 0.84403 0.89207 1.24604 1.02032 0.97211 0.95550 1.69693 1.54410 1.36075 0.98469 0.86603 0.78398 0.87308 0.76577 1.21765 1.21827 1.20449 1.21798 0.93470 1.01502 0.99004 1.21583 1.00610 0.98749 0.94986 1.21540 0.96721 1.00448 0.96823 1.21567 0.95299 1.00053 0.97964 1.21496 0.97627 0.98456 0.93614 0.90433 1.22304 0.94612 1.01962 1.01024 1.68124 1.08675 1.30219 1.11214 0.89304 0.90053 0.89545 0.83171 0.80964 0.76008 0.91257 0.94864 0.80966 0.93316 0.90550 0.90089 0.91817 0.92233 0.91943 0.92446 0.92318 0.92189 0.92466 0.94963 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.22 36.01 0.37 -0.57 16 2 C 0.17 2.17 6.82 -82.26 -0.56 1.61 16 3 C -0.22 -2.15 9.87 -39.16 -0.39 -2.54 16 4 C 0.15 1.58 11.30 -17.22 -0.19 1.39 16 5 N -0.50 -7.36 9.58 -11.12 -0.11 -7.47 16 6 C 0.30 5.17 7.60 -157.07 -1.19 3.98 16 7 C 0.58 10.78 6.04 -12.01 -0.07 10.71 16 8 O -0.47 -9.87 10.20 5.39 0.05 -9.81 16 9 N -0.69 -11.30 3.53 -48.32 -0.17 -11.47 16 10 C 0.18 2.83 0.32 -131.82 -0.04 2.79 16 11 C 0.14 2.82 4.39 -4.04 -0.02 2.80 16 12 N -0.75 -18.69 4.83 -59.91 -0.29 -18.98 16 13 C -0.23 -6.76 10.47 -15.06 -0.16 -6.91 16 14 H 0.09 2.87 8.06 -52.48 -0.42 2.45 16 15 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 16 N -0.94 -30.67 13.97 55.49 0.78 -29.89 16 17 Si 0.88 23.37 27.73 -169.99 -4.71 18.65 16 18 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 19 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 21 C -0.12 -1.73 4.71 -26.74 -0.13 -1.86 16 22 C -0.12 -1.38 5.75 -26.73 -0.15 -1.53 16 23 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 24 C -0.11 -1.29 5.04 -26.73 -0.13 -1.42 16 25 C -0.09 -1.28 2.07 -90.62 -0.19 -1.47 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 C -0.14 -2.20 7.30 37.16 0.27 -1.93 16 28 N -0.47 -7.93 10.07 -7.37 -0.07 -8.01 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.40 5.95 6.28 -40.82 -0.26 5.69 16 35 H 0.07 1.59 4.20 -51.93 -0.22 1.37 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.36 8.80 4.47 -40.82 -0.18 8.61 16 38 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 39 H 0.08 1.28 7.28 -51.93 -0.38 0.90 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.66 6.62 -51.93 -0.34 0.32 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.74 7.60 -51.93 -0.39 0.34 16 47 H 0.06 0.95 5.47 -51.93 -0.28 0.67 16 48 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.08 1.49 5.17 -51.93 -0.27 1.22 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -36.39 373.07 -9.16 -45.54 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.41 Total: 12.21 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.84 Total: 3.60 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: 0.13 Total: -75.82 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.05 Total: -9.81 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.71 Total: 18.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.39 -9.16 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318746310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.192 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds