Wall clock time and date at job start Tue Mar 31 2020 17:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38044 * 126.28654 * 2 1 4 4 C 1.47426 * 126.42342 * 359.97438 * 3 2 1 5 5 O 1.21616 * 119.99158 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00786 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00215 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.46804 * 180.02562 * 7 6 4 9 9 C 1.30994 * 119.99826 * 125.27541 * 8 7 6 10 10 C 1.50702 * 120.00204 * 179.71900 * 9 8 7 11 11 N 1.46500 * 109.46883 * 124.99760 * 10 9 8 12 12 C 1.36943 * 119.99537 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99955 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47335 * 89.99980 * 16 14 12 18 18 H 1.48500 * 109.47006 * 209.99756 * 16 14 12 19 19 H 1.48502 * 109.47092 * 329.99609 * 16 14 12 20 20 C 1.41294 * 107.16804 * 180.24556 * 3 2 1 21 21 N 1.30445 * 108.02325 * 359.61928 * 20 3 2 22 22 N 1.34251 * 126.29281 * 180.02562 * 2 1 3 23 23 C 1.46496 * 125.75602 * 359.96091 * 22 2 1 24 24 C 1.54267 * 110.03486 * 237.90928 * 23 22 2 25 25 C 1.54967 * 104.16013 * 217.13811 * 24 23 22 26 26 C 1.54885 * 102.78072 * 37.88104 * 25 24 23 27 27 C 1.53878 * 110.03713 * 120.68658 * 23 22 2 28 28 H 1.09001 * 109.47186 * 89.97479 * 1 2 3 29 29 H 1.08996 * 109.46990 * 209.97382 * 1 2 3 30 30 H 1.09005 * 109.47559 * 329.97368 * 1 2 3 31 31 H 0.96997 * 119.99865 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.47066 * 59.99906 * 7 6 4 33 33 H 1.09001 * 109.47002 * 300.00046 * 7 6 4 34 34 H 1.08002 * 119.99761 * 304.99301 * 8 7 6 35 35 H 1.08002 * 120.00350 * 359.72370 * 9 8 7 36 36 H 1.08998 * 109.47600 * 245.00508 * 10 9 8 37 37 H 1.09004 * 109.46937 * 5.00335 * 10 9 8 38 38 H 0.96999 * 120.00357 * 0.02562 * 11 10 9 39 39 H 0.96995 * 120.00545 * 179.97438 * 15 14 12 40 40 H 1.07998 * 125.99087 * 179.73592 * 20 3 2 41 41 H 1.08994 * 110.01618 * 359.29643 * 23 22 2 42 42 H 1.09009 * 110.48173 * 335.77668 * 24 23 22 43 43 H 1.08991 * 110.49248 * 98.41964 * 24 23 22 44 44 H 1.09003 * 110.71555 * 279.56898 * 25 24 23 45 45 H 1.09000 * 110.76389 * 156.22312 * 25 24 23 46 46 H 1.08998 * 110.48792 * 203.40944 * 26 25 24 47 47 H 1.09004 * 110.59743 * 80.81744 * 26 25 24 48 48 H 1.08994 * 110.03470 * 238.57294 * 27 23 22 49 49 H 1.09001 * 110.02577 * 359.95621 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.6994 2.7878 -0.0006 6 7 2.7998 3.5108 -0.0010 7 6 2.3643 4.9096 -0.0009 8 6 3.5715 5.8116 -0.0021 9 6 3.7033 6.7282 -0.9286 10 6 4.9074 7.6344 -0.9262 11 7 5.5813 7.5545 -2.2246 12 6 6.7087 8.2961 -2.4576 13 1 7.1013 8.9394 -1.6840 14 6 7.3469 8.2209 -3.6880 15 7 6.8687 7.4364 -4.6305 16 14 8.8852 9.2318 -4.0056 17 1 10.0833 8.4461 -3.6154 18 1 8.9649 9.5718 -5.4490 19 1 8.8304 10.4814 -3.2051 20 6 3.6590 0.6500 -0.0058 21 7 3.6341 -0.6542 -0.0008 22 7 2.3016 -1.0821 -0.0005 23 6 1.8501 -2.4757 -0.0003 24 6 2.4204 -3.2158 1.2272 25 6 2.7370 -4.6379 0.6991 26 6 3.2688 -4.3625 -0.7293 27 6 2.3888 -3.2046 -1.2438 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 3.7460 3.2975 -0.0013 32 1 1.7660 5.1038 0.8892 33 1 1.7653 5.1036 -0.8907 34 1 4.3258 5.7052 0.7635 35 1 2.9490 6.8346 -1.6942 36 1 4.5893 8.6609 -0.7444 37 1 5.5952 7.3226 -0.1401 38 1 5.2288 6.9764 -2.9192 39 1 7.3144 7.3841 -5.4904 40 1 4.5448 1.2677 -0.0113 41 1 0.7610 -2.5150 0.0129 42 1 3.3300 -2.7282 1.5781 43 1 1.6786 -3.2604 2.0245 44 1 1.8332 -5.2463 0.6642 45 1 3.5022 -5.1158 1.3108 46 1 3.1458 -5.2438 -1.3587 47 1 4.3157 -4.0608 -0.6971 48 1 1.5611 -3.5983 -1.8337 49 1 2.9855 -2.5211 -1.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568948599.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:39 Heat of formation + Delta-G solvation = 52.126572 kcal Electronic energy + Delta-G solvation = -27099.948652 eV Core-core repulsion = 23256.618531 eV Total energy + Delta-G solvation = -3843.330121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79217 -39.27264 -38.19392 -36.19581 -34.66437 -33.34567 -32.66478 -31.88104 -30.55903 -29.30233 -28.40863 -27.53897 -26.69008 -24.20342 -22.67701 -22.35740 -21.61729 -21.23710 -20.20082 -19.50006 -19.23129 -17.66506 -17.06925 -16.80457 -15.90884 -15.73030 -15.68979 -15.18575 -14.90090 -14.64161 -14.17191 -14.06456 -13.89373 -13.67739 -13.49470 -13.28738 -13.22099 -13.10633 -12.73762 -12.50111 -12.37862 -12.12022 -11.95041 -11.79126 -11.68320 -11.64348 -11.44187 -11.09853 -11.01206 -10.95308 -10.81902 -10.58493 -10.07008 -9.88312 -9.78476 -9.60509 -9.19844 -8.98914 -8.76940 -8.60164 -6.93411 -5.76785 -3.06315 1.33083 1.99815 2.03714 2.36295 3.43908 3.45859 3.48788 3.50693 3.52159 3.85822 3.97354 4.17320 4.31747 4.47519 4.60460 4.64448 4.73455 4.85712 4.88615 4.92057 5.03774 5.08691 5.09801 5.24444 5.27230 5.28934 5.32633 5.37905 5.50972 5.56290 5.56503 5.63302 5.68022 5.73670 5.81157 5.82559 5.89835 6.04802 6.16327 6.23730 6.45789 6.51899 6.60367 6.65112 6.94844 7.18628 7.35572 7.63978 7.69259 8.33602 8.41561 9.52779 10.09499 10.44748 11.45903 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.001885 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.547919 B =14847.397000 C =16222.920191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.155 3.845 3 C -0.297 4.297 4 C 0.595 3.405 5 O -0.555 6.555 6 N -0.720 5.720 7 C 0.159 3.841 8 C -0.201 4.201 9 C -0.108 4.108 10 C 0.172 3.828 11 N -0.730 5.730 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.014 4.014 15 N -0.932 5.932 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.083 3.917 21 N -0.292 5.292 22 N -0.354 5.354 23 C 0.152 3.848 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.190 0.810 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 -25.411 12.771 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.023 3.977 3 C -0.312 4.312 4 C 0.383 3.617 5 O -0.435 6.435 6 N -0.371 5.371 7 C 0.036 3.964 8 C -0.220 4.220 9 C -0.127 4.127 10 C 0.045 3.955 11 N -0.374 5.374 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.581 5.581 16 Si 0.740 3.260 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.105 4.105 21 N -0.110 5.110 22 N -0.134 5.134 23 C 0.050 3.950 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.159 4.159 27 C -0.170 4.170 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.236 0.764 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.207 0.793 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.768 -26.292 12.787 32.316 hybrid contribution 0.885 1.081 -0.546 1.500 sum -12.883 -25.211 12.241 30.845 Atomic orbital electron populations 1.20691 0.86288 1.04636 1.04158 1.21510 0.94861 0.86374 0.94983 1.19986 0.92924 0.93445 1.24798 1.17196 0.85373 0.83682 0.75462 1.90715 1.16587 1.84400 1.51787 1.45792 1.09858 1.05905 1.75524 1.20284 0.95143 0.78841 1.02145 1.22704 0.99229 0.98630 1.01443 1.23323 0.97948 0.95476 0.95956 1.19829 0.89869 0.95518 0.90251 1.42301 1.30516 1.53565 1.11004 1.19248 1.01757 1.18562 0.97709 0.91073 1.24770 0.99620 1.00244 0.96392 1.69667 1.41646 1.41765 1.05000 0.86160 0.83082 0.79650 0.77114 1.21680 1.21744 1.20718 1.24083 0.97250 0.92077 0.97081 1.77139 0.96134 1.12962 1.24801 1.48682 1.03981 1.05641 1.55112 1.22175 0.99301 0.76111 0.97415 1.22764 1.02293 0.95892 0.96088 1.22483 1.01287 0.95784 0.96410 1.22327 0.99974 0.97531 0.96047 1.22497 1.00340 0.97928 0.96258 0.89553 0.91395 0.87415 0.76415 0.91142 0.91252 0.86780 0.87279 0.95174 0.95674 0.78126 0.93465 0.79318 0.87513 0.89642 0.90803 0.91092 0.90811 0.91173 0.90900 0.90526 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.41 36.00 0.34 -0.49 16 2 C 0.16 1.67 7.01 -81.61 -0.57 1.09 16 3 C -0.30 -3.60 6.13 -105.07 -0.64 -4.25 16 4 C 0.59 8.16 7.81 -12.52 -0.10 8.06 16 5 O -0.56 -8.95 14.84 5.26 0.08 -8.87 16 6 N -0.72 -8.94 5.54 -62.56 -0.35 -9.28 16 7 C 0.16 2.06 6.11 -5.19 -0.03 2.03 16 8 C -0.20 -2.76 9.24 -36.02 -0.33 -3.10 16 9 C -0.11 -1.76 9.24 -36.02 -0.33 -2.10 16 10 C 0.17 3.47 6.70 -5.19 -0.03 3.44 16 11 N -0.73 -18.73 5.59 -61.08 -0.34 -19.07 16 12 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 13 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 14 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 15 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 16 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.08 0.92 11.50 -16.98 -0.20 0.72 16 21 N -0.29 -3.37 11.92 30.86 0.37 -3.00 16 22 N -0.35 -3.51 3.18 -49.09 -0.16 -3.67 16 23 C 0.15 1.04 3.67 -66.81 -0.25 0.79 16 24 C -0.13 -0.81 6.52 -25.03 -0.16 -0.98 16 25 C -0.12 -0.58 6.91 -24.70 -0.17 -0.75 16 26 C -0.12 -0.68 6.83 -25.07 -0.17 -0.85 16 27 C -0.13 -0.86 6.54 -25.61 -0.17 -1.03 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.38 7.07 -51.93 -0.37 0.01 16 30 H 0.11 1.09 6.50 -51.93 -0.34 0.75 16 31 H 0.40 4.28 7.42 -40.82 -0.30 3.97 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 34 H 0.11 1.48 7.84 -52.49 -0.41 1.07 16 35 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 38 H 0.39 10.42 7.66 -40.82 -0.31 10.10 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 40 H 0.19 1.60 7.50 -52.49 -0.39 1.21 16 41 H 0.11 0.52 6.67 -51.93 -0.35 0.17 16 42 H 0.08 0.70 7.70 -51.92 -0.40 0.30 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.71 7.83 -51.93 -0.41 0.30 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -34.21 403.14 -9.54 -43.75 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.85 Total: 9.22 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.07 Total: -4.89 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.25 Total: -62.75 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.21 -9.54 -43.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568948599.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.874 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds