Wall clock time and date at job start Tue Mar 31 2020 17:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28453 * 125.18947 * 2 1 4 4 C 1.30859 * 110.92584 * 180.30059 * 3 2 1 5 5 C 1.39677 * 107.86495 * 359.71123 * 4 3 2 6 6 C 1.50699 * 127.32319 * 179.97438 * 5 4 3 7 7 C 1.53003 * 117.49645 * 8.66472 * 6 5 4 8 8 C 1.53001 * 117.49767 * 300.04266 * 6 5 4 9 9 C 1.36595 * 125.19465 * 179.80747 * 2 1 3 10 10 C 1.47168 * 126.88111 * 359.97438 * 9 2 1 11 11 O 1.21628 * 119.99630 * 92.20745 * 10 9 2 12 12 N 1.34774 * 119.99774 * 272.20567 * 10 9 2 13 13 C 1.47020 * 125.65247 * 5.32113 * 12 10 9 14 14 C 1.54328 * 107.27298 * 181.02424 * 13 12 10 15 15 H 1.08998 * 110.71873 * 140.55892 * 14 13 12 16 16 N 1.46497 * 110.71562 * 263.83041 * 14 13 12 17 17 C 1.36943 * 119.99937 * 273.54287 * 16 14 13 18 18 H 1.07995 * 119.99946 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99911 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99791 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00067 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47094 * 90.00210 * 21 19 17 23 23 H 1.48500 * 109.47254 * 210.00168 * 21 19 17 24 24 H 1.48507 * 109.47024 * 330.00278 * 21 19 17 25 25 C 1.55151 * 102.94078 * 22.19302 * 14 13 12 26 26 C 1.52999 * 111.00623 * 82.57444 * 25 14 13 27 27 C 1.52998 * 111.00321 * 206.38697 * 25 14 13 28 28 C 1.47431 * 125.64451 * 185.01449 * 12 10 9 29 29 H 1.08996 * 109.47251 * 274.98080 * 1 2 3 30 30 H 1.08997 * 109.47032 * 34.98344 * 1 2 3 31 31 H 1.09005 * 109.46674 * 154.98338 * 1 2 3 32 32 H 1.08004 * 126.06855 * 179.73965 * 4 3 2 33 33 H 1.08998 * 115.55056 * 154.37497 * 6 5 4 34 34 H 1.08998 * 117.49689 * 359.97438 * 7 6 5 35 35 H 1.08992 * 117.49704 * 145.02400 * 7 6 5 36 36 H 1.08992 * 117.49890 * 214.97741 * 8 6 5 37 37 H 1.09003 * 117.49815 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.88262 * 300.44094 * 13 12 10 39 39 H 1.09000 * 109.88000 * 61.45225 * 13 12 10 40 40 H 0.96997 * 120.00557 * 93.54785 * 16 14 13 41 41 H 0.97004 * 119.99704 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.46930 * 59.99435 * 26 25 14 43 43 H 1.09004 * 109.46959 * 179.97438 * 26 25 14 44 44 H 1.08999 * 109.46735 * 299.99977 * 26 25 14 45 45 H 1.09006 * 109.47197 * 59.99879 * 27 25 14 46 46 H 1.09001 * 109.47282 * 179.97438 * 27 25 14 47 47 H 1.09001 * 109.47349 * 300.00407 * 27 25 14 48 48 H 1.09001 * 110.36632 * 274.74268 * 28 12 10 49 49 H 1.08995 * 110.36579 * 37.06843 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0498 0.0000 4 6 3.4735 0.7274 -0.0064 5 6 3.5613 -0.6666 -0.0043 6 6 4.8147 -1.5032 -0.0102 7 6 6.1483 -0.7791 0.1849 8 6 5.7724 -1.3325 -1.1911 9 6 2.2523 -1.1162 0.0038 10 6 1.7994 -2.5165 0.0090 11 8 1.6504 -3.1113 -1.0414 12 7 1.5497 -3.1396 1.1777 13 6 1.5811 -2.5123 2.5070 14 6 1.2579 -3.6121 3.5403 15 1 1.8768 -3.4988 4.4304 16 7 -0.1645 -3.5924 3.8903 17 6 -0.6130 -2.7676 4.8873 18 1 0.0818 -2.1313 5.4151 19 6 -1.9608 -2.7493 5.2193 20 7 -2.3918 -1.9562 6.1771 21 14 -3.1627 -3.8494 4.3057 22 1 -3.2640 -5.1573 5.0016 23 1 -4.4988 -3.2020 4.2718 24 1 -2.6810 -4.0634 2.9173 25 6 1.6189 -4.9173 2.7831 26 6 3.1201 -5.2014 2.8649 27 6 0.8098 -6.1017 3.3153 28 6 1.1936 -4.5616 1.3342 29 1 -0.3633 0.0892 1.0237 30 1 -0.3633 0.8420 -0.5892 31 1 -0.3633 -0.9313 -0.4346 32 1 4.3048 1.4168 -0.0119 33 1 4.7160 -2.5009 0.4176 34 1 6.1190 0.3025 0.3171 35 1 6.9272 -1.3002 0.7413 36 1 6.3041 -2.2177 -1.5399 37 1 5.4961 -0.6147 -1.9635 38 1 2.5723 -2.1021 2.7000 39 1 0.8350 -1.7194 2.5604 40 1 -0.7887 -4.1636 3.4161 41 1 -3.3337 -1.9432 6.4088 42 1 3.4127 -5.3108 3.9092 43 1 3.3454 -6.1219 2.3263 44 1 3.6713 -4.3742 2.4178 45 1 -0.2540 -5.9038 3.1831 46 1 1.0821 -7.0035 2.7669 47 1 1.0243 -6.2416 4.3748 48 1 0.1199 -4.7001 1.2068 49 1 1.7434 -5.1715 0.6174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995887607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:44 Heat of formation + Delta-G solvation = 91.960941 kcal Electronic energy + Delta-G solvation = -30288.227635 eV Core-core repulsion = 26446.624861 eV Total energy + Delta-G solvation = -3841.602773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53198 -40.05431 -38.01442 -37.33187 -34.18094 -33.42579 -33.09028 -31.19135 -30.81994 -28.39815 -27.22614 -26.98221 -26.50737 -24.00069 -23.57470 -22.56003 -22.22157 -21.23064 -20.06917 -19.26760 -18.97722 -17.70028 -17.39398 -16.43253 -16.05442 -15.74302 -15.55185 -15.10694 -14.74935 -14.52725 -14.30922 -13.99837 -13.75149 -13.60837 -12.93832 -12.90006 -12.88072 -12.76239 -12.59789 -12.29973 -12.19052 -12.09245 -11.87026 -11.75820 -11.64230 -11.36711 -11.10528 -11.04918 -10.75997 -10.73913 -10.65720 -10.39907 -10.38085 -10.10289 -9.98382 -9.69565 -9.14751 -9.10487 -8.52429 -8.51102 -7.46567 -5.91533 -3.29177 1.67528 2.13673 2.59537 2.77250 3.15552 3.25048 3.27754 3.35048 3.88010 4.31782 4.37234 4.44824 4.70189 4.77867 4.79532 4.85932 4.93704 4.96238 5.11831 5.15140 5.17687 5.18677 5.40295 5.40918 5.45153 5.50642 5.52827 5.56480 5.67177 5.74515 5.75999 5.85758 5.87862 5.94280 6.00784 6.01644 6.05626 6.10641 6.15275 6.18998 6.33799 6.39005 6.49401 6.56325 6.58872 6.74533 7.55003 7.82922 8.07103 8.09467 8.26966 9.03813 9.76011 9.94356 11.26111 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.004316 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.110742 B = 6485.576808 C = 7450.366397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.268 5.268 3 N -0.283 5.283 4 C 0.006 3.994 5 C -0.130 4.130 6 C -0.078 4.078 7 C -0.169 4.169 8 C -0.170 4.170 9 C -0.009 4.009 10 C 0.603 3.397 11 O -0.534 6.534 12 N -0.593 5.593 13 C 0.074 3.926 14 C 0.186 3.814 15 H 0.081 0.919 16 N -0.737 5.737 17 C -0.251 4.251 18 H 0.092 0.908 19 C 0.013 3.987 20 N -0.928 5.928 21 Si 0.878 3.122 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.091 4.091 26 C -0.130 4.130 27 C -0.127 4.127 28 C 0.119 3.881 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.182 0.818 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -1.412 -11.407 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.055 5.055 3 N -0.113 5.113 4 C -0.171 4.171 5 C -0.141 4.141 6 C -0.097 4.097 7 C -0.206 4.206 8 C -0.207 4.207 9 C -0.138 4.138 10 C 0.388 3.612 11 O -0.411 6.411 12 N -0.325 5.325 13 C -0.051 4.051 14 C 0.074 3.926 15 H 0.099 0.901 16 N -0.379 5.379 17 C -0.381 4.381 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.574 5.574 21 Si 0.708 3.292 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.092 4.092 26 C -0.187 4.187 27 C -0.185 4.185 28 C -0.003 4.003 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.199 0.801 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.612 -0.591 -11.809 17.287 hybrid contribution -0.645 -1.164 -0.543 1.437 sum 11.967 -1.755 -12.352 17.288 Atomic orbital electron populations 1.22244 0.72785 1.05132 1.05358 1.45500 1.07487 1.01692 1.50852 1.73142 1.03916 1.13551 1.20709 1.23273 0.93408 0.93920 1.06542 1.19671 0.91248 0.93493 1.09701 1.20111 0.87029 0.98743 1.03812 1.22969 0.97327 1.00593 0.99748 1.22997 1.02619 1.03343 0.91735 1.21132 0.91559 0.88814 1.12256 1.16613 0.77563 0.84102 0.82905 1.90820 1.52541 1.66739 1.30960 1.48395 1.66304 1.11389 1.06402 1.23260 1.01104 0.99032 0.81725 1.21180 0.87386 0.89776 0.94219 0.90127 1.42809 1.02475 1.50011 1.42598 1.19036 0.93248 1.16421 1.09383 0.88998 1.24640 0.96656 0.98948 0.98157 1.69690 1.14930 1.40798 1.32024 0.86673 0.81739 0.81120 0.79673 1.20773 1.21612 1.20433 1.22096 0.96248 0.96807 0.94080 1.21677 0.93712 1.01242 1.02099 1.21602 0.99843 0.95549 1.01505 1.22405 1.00255 0.80856 0.96825 0.88756 0.88352 0.89022 0.80119 0.87423 0.88487 0.88463 0.88633 0.88672 0.92015 0.90571 0.80193 0.92876 0.91935 0.92590 0.92627 0.92284 0.93033 0.91452 0.91280 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.21 59.85 0.67 1.75 16 2 N -0.27 -4.06 3.75 -63.88 -0.24 -4.30 16 3 N -0.28 -4.26 11.90 30.59 0.36 -3.90 16 4 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16 5 C -0.13 -1.82 5.94 -104.02 -0.62 -2.44 16 6 C -0.08 -0.91 6.12 -91.77 -0.56 -1.47 16 7 C -0.17 -1.51 10.05 -26.73 -0.27 -1.78 16 8 C -0.17 -1.65 10.23 -26.73 -0.27 -1.93 16 9 C -0.01 -0.14 5.90 -82.06 -0.48 -0.62 16 10 C 0.60 10.14 6.86 -12.64 -0.09 10.05 16 11 O -0.53 -10.34 17.40 5.25 0.09 -10.25 16 12 N -0.59 -9.33 3.31 -171.74 -0.57 -9.90 16 13 C 0.07 1.21 5.89 -3.06 -0.02 1.19 16 14 C 0.19 3.13 2.86 -66.10 -0.19 2.94 16 15 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 16 N -0.74 -15.44 4.42 -51.65 -0.23 -15.67 16 17 C -0.25 -6.45 10.46 -15.06 -0.16 -6.61 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 19 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 20 N -0.93 -27.61 13.97 55.49 0.78 -26.84 16 21 Si 0.88 20.80 27.74 -169.99 -4.71 16.09 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 25 C -0.09 -1.25 0.83 -152.24 -0.13 -1.37 16 26 C -0.13 -1.47 8.58 37.16 0.32 -1.15 16 27 C -0.13 -1.72 8.22 37.16 0.31 -1.41 16 28 C 0.12 1.75 5.80 -2.40 -0.01 1.74 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 32 H 0.18 1.80 7.34 -52.48 -0.39 1.42 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 0.78 7.12 -51.93 -0.37 0.41 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 40 H 0.36 7.64 3.96 -40.82 -0.16 7.48 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 45 H 0.06 0.89 6.38 -51.93 -0.33 0.56 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.07 1.09 7.99 -51.93 -0.41 0.67 16 49 H 0.08 1.06 8.01 -51.93 -0.42 0.64 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -31.75 397.47 -8.29 -40.04 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.96 Total: 9.72 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.80 Total: -0.98 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.10 Total: -60.61 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.75 -8.29 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995887607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.003 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds