Wall clock time and date at job start Tue Mar 31 2020 17:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.89181 * 2 1 4 4 N 1.40089 * 108.20013 * 180.25840 * 3 2 1 5 5 H 0.97002 * 126.03617 * 179.74100 * 4 3 2 6 6 C 1.34950 * 107.92470 * 359.71594 * 4 3 2 7 7 C 1.50706 * 126.12707 * 180.02562 * 6 4 3 8 8 C 1.35315 * 107.74810 * 359.97438 * 6 4 3 9 9 C 1.50696 * 126.04271 * 180.02562 * 8 6 4 10 10 C 1.50692 * 109.47426 * 90.00277 * 9 8 6 11 11 O 1.21286 * 120.00065 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00340 * 180.02562 * 10 9 8 13 13 C 1.44470 * 116.79233 * 0.29057 * 12 10 9 14 14 C 1.53053 * 109.25549 * 218.58322 * 13 12 10 15 15 C 1.52941 * 108.49135 * 306.38980 * 14 13 12 16 16 C 1.52925 * 109.79670 * 65.99488 * 15 14 13 17 17 H 1.09001 * 111.26362 * 66.64687 * 16 15 14 18 18 C 1.44182 * 117.75971 * 179.97438 * 12 10 9 19 19 H 1.09004 * 109.22970 * 27.38660 * 18 12 10 20 20 C 1.54067 * 111.76953 * 266.48830 * 18 12 10 21 21 C 1.54053 * 103.74977 * 207.41415 * 20 18 12 22 22 N 1.46889 * 107.70674 * 17.12234 * 21 20 18 23 23 C 1.36938 * 125.57740 * 182.93938 * 22 21 20 24 24 H 1.08006 * 119.99512 * 173.18846 * 23 22 21 25 25 C 1.38801 * 120.00323 * 353.18759 * 23 22 21 26 26 N 1.31622 * 119.99991 * 6.26621 * 25 23 22 27 27 Si 1.86806 * 120.00128 * 186.26191 * 25 23 22 28 28 H 1.48499 * 109.46792 * 94.98906 * 27 25 23 29 29 H 1.48495 * 109.47133 * 214.98865 * 27 25 23 30 30 H 1.48494 * 109.46914 * 334.98963 * 27 25 23 31 31 H 1.09001 * 109.47299 * 270.21030 * 1 2 3 32 32 H 1.08998 * 109.47242 * 30.21650 * 1 2 3 33 33 H 1.09007 * 109.47020 * 150.21335 * 1 2 3 34 34 H 1.08997 * 109.46738 * 269.97365 * 7 6 4 35 35 H 1.08996 * 109.46758 * 29.97672 * 7 6 4 36 36 H 1.09001 * 109.47072 * 149.97602 * 7 6 4 37 37 H 1.09006 * 109.47278 * 330.00062 * 9 8 6 38 38 H 1.09008 * 109.47167 * 210.00903 * 9 8 6 39 39 H 1.08999 * 109.44020 * 98.75255 * 13 12 10 40 40 H 1.08995 * 109.75808 * 338.60686 * 13 12 10 41 41 H 1.09003 * 109.63179 * 186.68845 * 14 13 12 42 42 H 1.08995 * 109.63640 * 66.08938 * 14 13 12 43 43 H 1.09008 * 109.41815 * 305.89632 * 15 14 13 44 44 H 1.08999 * 109.36304 * 186.06761 * 15 14 13 45 45 H 1.09000 * 110.57264 * 325.98523 * 20 18 12 46 46 H 1.08998 * 110.57097 * 88.69914 * 20 18 12 47 47 H 1.08995 * 109.81112 * 136.67884 * 21 20 18 48 48 H 1.09006 * 109.81154 * 257.57418 * 21 20 18 49 49 H 0.97004 * 119.99585 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 1 4.3907 1.2081 -0.0109 6 6 3.6142 -0.7153 -0.0032 7 6 4.8351 -1.5988 -0.0071 8 6 2.3272 -1.1330 0.0049 9 6 1.8600 -2.5657 0.0110 10 6 1.7119 -3.0397 1.4337 11 8 1.9617 -2.2883 2.3524 12 7 1.3030 -4.2991 1.6854 13 6 1.0319 -5.1369 0.5401 14 6 -0.1968 -6.0030 0.8277 15 6 0.0330 -6.7497 2.1425 16 6 0.0888 -5.7532 3.3012 17 1 -0.8777 -5.2740 3.4573 18 6 1.1785 -4.7018 3.0643 19 1 0.9693 -3.8249 3.6769 20 6 2.4610 -5.3834 3.5784 21 6 1.9561 -6.3222 4.6906 22 7 0.5072 -6.4861 4.5133 23 6 -0.3203 -7.2018 5.3368 24 1 -1.3893 -7.1733 5.1853 25 6 0.2147 -7.9639 6.3662 26 7 1.5029 -7.9028 6.6293 27 14 -0.8936 -9.0760 7.3784 28 1 -0.8593 -10.4510 6.8185 29 1 -0.4175 -9.1021 8.7847 30 1 -2.2850 -8.5590 7.3364 31 1 -0.3634 0.0038 1.0277 32 1 -0.3633 0.8880 -0.5172 33 1 -0.3633 -0.8920 -0.5106 34 1 5.1242 -1.8143 -1.0357 35 1 5.6536 -1.0896 0.5014 36 1 4.6102 -2.5316 0.5101 37 1 2.5907 -3.1884 -0.5053 38 1 0.8984 -2.6365 -0.4976 39 1 1.8918 -5.7789 0.3486 40 1 0.8411 -4.5150 -0.3344 41 1 -0.3369 -6.7201 0.0189 42 1 -1.0791 -5.3691 0.9160 43 1 0.9747 -7.2963 2.0891 44 1 -0.7844 -7.4516 2.3072 45 1 2.9369 -5.9549 2.7815 46 1 3.1520 -4.6438 3.9828 47 1 2.4502 -7.2903 4.6094 48 1 2.1615 -5.8825 5.6667 49 1 1.8767 -8.4352 7.3489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049886607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:36 Heat of formation + Delta-G solvation = 61.067597 kcal Electronic energy + Delta-G solvation = -29840.602755 eV Core-core repulsion = 25997.660346 eV Total energy + Delta-G solvation = -3842.942409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52736 -40.30752 -37.82520 -35.39055 -33.56131 -33.14669 -32.50373 -32.16732 -29.67948 -28.82967 -28.30434 -27.66045 -26.24684 -24.35227 -24.28071 -21.95955 -20.88168 -20.21433 -20.00251 -19.09964 -17.99511 -17.43425 -17.11007 -16.86490 -15.56912 -15.32244 -15.02226 -14.74766 -14.31127 -14.13502 -13.85355 -13.65399 -13.56164 -13.45339 -13.33913 -13.08757 -12.85208 -12.55407 -12.47653 -12.41297 -12.14120 -12.04368 -11.90188 -11.68719 -11.41515 -11.04320 -10.92960 -10.74803 -10.64989 -10.57701 -10.41849 -10.07283 -10.02944 -9.63168 -9.53907 -9.46116 -9.28917 -8.57523 -8.42467 -8.21211 -6.83877 -5.71336 -3.04971 1.77163 2.57167 2.76521 2.87901 3.38516 3.40859 3.46605 3.48137 4.49121 4.49782 4.54902 4.73854 4.84440 4.97236 5.02963 5.13932 5.17115 5.23457 5.31239 5.32379 5.42202 5.44904 5.49189 5.59014 5.62121 5.64243 5.68213 5.74428 5.82913 5.88312 5.92582 6.04087 6.06483 6.13156 6.27166 6.33374 6.42012 6.57215 6.60872 6.64175 6.79675 7.04811 7.16835 7.19667 7.57910 7.62291 7.64185 7.69898 7.84374 8.26359 8.50279 9.22072 9.82152 10.47932 11.40061 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.002894 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.661546 B = 9673.310895 C = 9942.983611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.095 3.905 3 N -0.300 5.300 4 N -0.477 5.477 5 H 0.436 0.564 6 C 0.102 3.898 7 C -0.094 4.094 8 C -0.215 4.215 9 C -0.060 4.060 10 C 0.501 3.499 11 O -0.531 6.531 12 N -0.589 5.589 13 C 0.107 3.893 14 C -0.133 4.133 15 C -0.129 4.129 16 C 0.160 3.840 17 H 0.053 0.947 18 C 0.139 3.861 19 H 0.090 0.910 20 C -0.149 4.149 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.005 4.005 26 N -0.918 5.918 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 10.660 -19.432 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 N -0.123 5.123 4 N -0.185 5.185 5 H 0.280 0.720 6 C -0.026 4.026 7 C -0.153 4.153 8 C -0.227 4.227 9 C -0.101 4.101 10 C 0.288 3.712 11 O -0.407 6.407 12 N -0.321 5.321 13 C -0.017 4.017 14 C -0.171 4.171 15 C -0.169 4.169 16 C 0.052 3.948 17 H 0.071 0.929 18 C 0.035 3.965 19 H 0.108 0.892 20 C -0.189 4.189 21 C 0.055 3.945 22 N -0.321 5.321 23 C -0.356 4.356 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.565 5.565 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.612 12.150 -18.679 22.574 hybrid contribution 0.008 -1.339 0.637 1.483 sum 3.619 10.811 -18.042 21.343 Atomic orbital electron populations 1.20200 0.86884 1.02953 1.03365 1.22129 0.96827 0.90139 0.98099 1.77248 0.86409 1.22253 1.26390 1.46047 1.07285 1.04731 1.60461 0.72049 1.20789 0.96808 0.84934 1.00111 1.20478 0.92965 0.98757 1.03092 1.19041 0.91326 0.94777 1.17548 1.19986 1.03048 0.92369 0.94678 1.20828 0.77314 0.81626 0.91453 1.90693 1.48993 1.54455 1.46521 1.46820 1.66587 1.12146 1.06525 1.21313 0.98370 0.94064 0.87911 1.21862 0.97235 0.98883 0.99161 1.22083 1.02247 0.99051 0.93510 1.20938 0.95043 0.90796 0.88033 0.92890 1.21084 0.96687 0.98547 0.80197 0.89159 1.22966 0.96868 0.99217 0.99837 1.21042 0.83800 0.95759 0.93940 1.44522 1.04206 1.58440 1.24921 1.19016 0.89185 1.19661 1.07708 0.90440 1.24818 0.96081 1.00075 0.99220 1.69991 1.10563 1.43409 1.32568 0.86129 0.79532 0.80921 0.79382 1.21662 1.21805 1.20625 0.90197 0.90964 0.90556 0.90122 0.90957 0.89513 0.88661 0.88301 0.92183 0.90201 0.91258 0.91701 0.92003 0.91905 0.92663 0.92121 0.93783 0.93635 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.26 36.01 0.37 -0.39 16 2 C 0.09 1.23 7.22 -82.40 -0.59 0.63 16 3 N -0.30 -4.08 12.70 33.67 0.43 -3.65 16 4 N -0.48 -5.26 7.36 33.48 0.25 -5.02 16 5 H 0.44 3.34 8.96 -182.60 -1.64 1.70 16 6 C 0.10 1.13 7.21 -82.26 -0.59 0.54 16 7 C -0.09 -0.74 10.04 36.01 0.36 -0.37 16 8 C -0.22 -2.63 4.59 -105.06 -0.48 -3.11 16 9 C -0.06 -0.62 3.90 -29.04 -0.11 -0.74 16 10 C 0.50 7.35 7.56 -10.99 -0.08 7.27 16 11 O -0.53 -10.14 15.32 5.55 0.09 -10.05 16 12 N -0.59 -8.61 2.76 -168.53 -0.47 -9.08 16 13 C 0.11 1.18 5.97 -5.10 -0.03 1.15 16 14 C -0.13 -1.61 6.10 -26.73 -0.16 -1.77 16 15 C -0.13 -2.19 5.31 -26.80 -0.14 -2.33 16 16 C 0.16 3.22 3.30 -67.18 -0.22 3.00 16 17 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 18 C 0.14 2.59 2.76 -68.47 -0.19 2.40 16 19 H 0.09 1.91 7.10 -51.93 -0.37 1.54 16 20 C -0.15 -2.95 6.45 -25.62 -0.17 -3.12 16 21 C 0.18 4.39 5.39 -3.28 -0.02 4.38 16 22 N -0.60 -14.90 2.94 -163.70 -0.48 -15.38 16 23 C -0.23 -6.23 10.26 -15.06 -0.15 -6.38 16 24 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 25 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 26 N -0.92 -26.87 10.34 55.49 0.57 -26.30 16 27 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.61 7.25 -51.92 -0.38 0.24 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.76 7.77 -51.93 -0.40 0.36 16 37 H 0.10 0.77 7.62 -51.93 -0.40 0.37 16 38 H 0.10 0.82 6.38 -51.92 -0.33 0.49 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.63 5.68 -51.93 -0.29 0.33 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.14 8.02 -51.92 -0.42 0.72 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.04 1.18 7.41 -51.93 -0.38 0.80 16 48 H 0.05 1.25 7.48 -51.93 -0.39 0.86 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -34.78 383.45 -10.37 -45.14 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.19 Total: 0.69 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.31 Total: 0.91 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.30 Total: -59.42 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.78 -10.37 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049886607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.210 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds