Wall clock time and date at job start Tue Mar 31 2020 17:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.89181 * 2 1 4 4 N 1.40089 * 108.20013 * 180.25840 * 3 2 1 5 5 H 0.97002 * 126.03617 * 179.74100 * 4 3 2 6 6 C 1.34950 * 107.92470 * 359.71594 * 4 3 2 7 7 C 1.50706 * 126.12707 * 180.02562 * 6 4 3 8 8 C 1.35315 * 107.74810 * 359.97438 * 6 4 3 9 9 C 1.50696 * 126.04271 * 180.02562 * 8 6 4 10 10 C 1.50692 * 109.47426 * 90.00277 * 9 8 6 11 11 O 1.21286 * 120.00065 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00340 * 180.02562 * 10 9 8 13 13 C 1.44470 * 116.79233 * 0.29057 * 12 10 9 14 14 C 1.53053 * 109.25549 * 218.58322 * 13 12 10 15 15 C 1.52941 * 108.49135 * 306.38980 * 14 13 12 16 16 C 1.52925 * 109.79670 * 65.99488 * 15 14 13 17 17 H 1.09001 * 111.26362 * 66.64687 * 16 15 14 18 18 C 1.44182 * 117.75971 * 179.97438 * 12 10 9 19 19 H 1.09004 * 109.22970 * 27.38660 * 18 12 10 20 20 C 1.54067 * 111.76953 * 266.48830 * 18 12 10 21 21 C 1.54053 * 103.74977 * 207.41415 * 20 18 12 22 22 N 1.46889 * 107.70674 * 17.12234 * 21 20 18 23 23 C 1.36938 * 125.57740 * 182.93938 * 22 21 20 24 24 H 1.08006 * 119.99512 * 173.18846 * 23 22 21 25 25 C 1.38801 * 120.00323 * 353.18759 * 23 22 21 26 26 N 1.31622 * 119.99991 * 6.26621 * 25 23 22 27 27 Si 1.86806 * 120.00128 * 186.26191 * 25 23 22 28 28 H 1.48499 * 109.46792 * 94.98906 * 27 25 23 29 29 H 1.48495 * 109.47133 * 214.98865 * 27 25 23 30 30 H 1.48494 * 109.46914 * 334.98963 * 27 25 23 31 31 H 1.09001 * 109.47299 * 270.21030 * 1 2 3 32 32 H 1.08998 * 109.47242 * 30.21650 * 1 2 3 33 33 H 1.09007 * 109.47020 * 150.21335 * 1 2 3 34 34 H 1.08997 * 109.46738 * 269.97365 * 7 6 4 35 35 H 1.08996 * 109.46758 * 29.97672 * 7 6 4 36 36 H 1.09001 * 109.47072 * 149.97602 * 7 6 4 37 37 H 1.09006 * 109.47278 * 330.00062 * 9 8 6 38 38 H 1.09008 * 109.47167 * 210.00903 * 9 8 6 39 39 H 1.08999 * 109.44020 * 98.75255 * 13 12 10 40 40 H 1.08995 * 109.75808 * 338.60686 * 13 12 10 41 41 H 1.09003 * 109.63179 * 186.68845 * 14 13 12 42 42 H 1.08995 * 109.63640 * 66.08938 * 14 13 12 43 43 H 1.09008 * 109.41815 * 305.89632 * 15 14 13 44 44 H 1.08999 * 109.36304 * 186.06761 * 15 14 13 45 45 H 1.09000 * 110.57264 * 325.98523 * 20 18 12 46 46 H 1.08998 * 110.57097 * 88.69914 * 20 18 12 47 47 H 1.08995 * 109.81112 * 136.67884 * 21 20 18 48 48 H 1.09006 * 109.81154 * 257.57418 * 21 20 18 49 49 H 0.97004 * 119.99585 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 1 4.3907 1.2081 -0.0109 6 6 3.6142 -0.7153 -0.0032 7 6 4.8351 -1.5988 -0.0071 8 6 2.3272 -1.1330 0.0049 9 6 1.8600 -2.5657 0.0110 10 6 1.7119 -3.0397 1.4337 11 8 1.9617 -2.2883 2.3524 12 7 1.3030 -4.2991 1.6854 13 6 1.0319 -5.1369 0.5401 14 6 -0.1968 -6.0030 0.8277 15 6 0.0330 -6.7497 2.1425 16 6 0.0888 -5.7532 3.3012 17 1 -0.8777 -5.2740 3.4573 18 6 1.1785 -4.7018 3.0643 19 1 0.9693 -3.8249 3.6769 20 6 2.4610 -5.3834 3.5784 21 6 1.9561 -6.3222 4.6906 22 7 0.5072 -6.4861 4.5133 23 6 -0.3203 -7.2018 5.3368 24 1 -1.3893 -7.1733 5.1853 25 6 0.2147 -7.9639 6.3662 26 7 1.5029 -7.9028 6.6293 27 14 -0.8936 -9.0760 7.3784 28 1 -0.8593 -10.4510 6.8185 29 1 -0.4175 -9.1021 8.7847 30 1 -2.2850 -8.5590 7.3364 31 1 -0.3634 0.0038 1.0277 32 1 -0.3633 0.8880 -0.5172 33 1 -0.3633 -0.8920 -0.5106 34 1 5.1242 -1.8143 -1.0357 35 1 5.6536 -1.0896 0.5014 36 1 4.6102 -2.5316 0.5101 37 1 2.5907 -3.1884 -0.5053 38 1 0.8984 -2.6365 -0.4976 39 1 1.8918 -5.7789 0.3486 40 1 0.8411 -4.5150 -0.3344 41 1 -0.3369 -6.7201 0.0189 42 1 -1.0791 -5.3691 0.9160 43 1 0.9747 -7.2963 2.0891 44 1 -0.7844 -7.4516 2.3072 45 1 2.9369 -5.9549 2.7815 46 1 3.1520 -4.6438 3.9828 47 1 2.4502 -7.2903 4.6094 48 1 2.1615 -5.8825 5.6667 49 1 1.8767 -8.4352 7.3489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049886607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:35 Heat of formation + Delta-G solvation = 38.216929 kcal Electronic energy + Delta-G solvation = -29841.593635 eV Core-core repulsion = 25997.660346 eV Total energy + Delta-G solvation = -3843.933289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.39502 -41.55970 -39.27976 -36.83994 -34.51156 -34.26498 -33.80308 -33.68949 -31.09758 -30.19776 -29.62411 -28.50634 -27.20079 -26.21269 -25.55930 -23.24531 -22.22976 -21.70269 -21.04637 -20.12179 -19.32915 -18.71748 -18.34929 -18.14619 -16.81472 -16.77051 -16.37366 -16.06159 -15.88464 -15.30244 -14.94903 -14.83895 -14.79773 -14.40287 -14.15204 -14.10310 -14.08418 -13.92338 -13.68915 -13.45185 -13.20255 -13.17257 -13.05328 -12.84605 -12.82272 -12.62139 -12.55065 -12.28635 -12.23180 -12.02565 -11.82400 -11.55455 -11.50376 -11.41321 -11.13598 -10.69282 -10.67556 -10.15037 -9.47838 -9.27766 -8.88745 -7.84816 -5.20411 0.94747 1.45909 1.47580 1.56506 1.65844 1.78089 2.02680 2.25725 2.51572 3.32772 3.57682 3.72448 3.77941 3.79428 3.91493 4.04836 4.09570 4.16709 4.21478 4.24171 4.31794 4.39437 4.44345 4.61589 4.64495 4.66776 4.71772 4.74341 4.76475 4.84904 4.90929 4.94077 5.01766 5.03880 5.11905 5.13356 5.14548 5.27480 5.28928 5.42956 5.45145 5.58314 5.67089 5.74724 5.77553 5.83179 6.20161 6.48246 6.57546 6.78228 7.09636 7.37834 7.76955 8.41852 9.25744 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.002894 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.661546 B = 9673.310895 C = 9942.983611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.078 3.922 3 N -0.338 5.338 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.102 3.898 7 C -0.092 4.092 8 C -0.240 4.240 9 C -0.049 4.049 10 C 0.500 3.500 11 O -0.583 6.583 12 N -0.587 5.587 13 C 0.099 3.901 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.155 3.845 17 H 0.045 0.955 18 C 0.158 3.842 19 H 0.057 0.943 20 C -0.132 4.132 21 C 0.192 3.808 22 N -0.617 5.617 23 C -0.236 4.236 24 H 0.082 0.918 25 C -0.065 4.065 26 N -0.951 5.951 27 Si 0.977 3.023 28 H -0.285 1.285 29 H -0.298 1.298 30 H -0.268 1.268 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.014 0.986 48 H 0.001 0.999 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 10.285 -23.161 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 N -0.162 5.162 4 N -0.185 5.185 5 H 0.292 0.708 6 C -0.027 4.027 7 C -0.151 4.151 8 C -0.251 4.251 9 C -0.089 4.089 10 C 0.290 3.710 11 O -0.462 6.462 12 N -0.318 5.318 13 C -0.022 4.022 14 C -0.161 4.161 15 C -0.159 4.159 16 C 0.048 3.952 17 H 0.063 0.937 18 C 0.052 3.948 19 H 0.075 0.925 20 C -0.172 4.172 21 C 0.067 3.933 22 N -0.342 5.342 23 C -0.365 4.365 24 H 0.100 0.900 25 C -0.258 4.258 26 N -0.600 5.600 27 Si 0.805 3.195 28 H -0.212 1.212 29 H -0.225 1.225 30 H -0.192 1.192 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.019 0.981 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.113 11.790 -22.483 25.577 hybrid contribution 0.172 -1.148 1.816 2.155 sum 3.285 10.642 -20.667 23.477 Atomic orbital electron populations 1.20286 0.85593 1.04648 1.02859 1.22625 0.98004 0.90451 0.97728 1.77175 0.87633 1.23427 1.27951 1.46119 1.07083 1.05264 1.60047 0.70769 1.21366 0.97840 0.85083 0.98455 1.20588 0.91834 0.97699 1.04945 1.19357 0.91693 0.95507 1.18588 1.20067 1.05684 0.91645 0.91481 1.21674 0.75672 0.80707 0.92916 1.90685 1.51163 1.55784 1.48588 1.46847 1.66532 1.12979 1.05470 1.21723 0.98358 0.94499 0.87615 1.21835 0.98108 0.99302 0.96861 1.21875 1.00983 0.98051 0.94996 1.21156 0.94949 0.91501 0.87546 0.93723 1.20518 0.95028 0.96410 0.82852 0.92488 1.22750 0.97433 0.98286 0.98707 1.20701 0.84066 0.94883 0.93669 1.44793 1.04205 1.58679 1.26554 1.19387 0.89832 1.19367 1.07906 0.89972 1.25656 0.97484 1.01842 1.00811 1.70213 1.12298 1.44319 1.33128 0.85078 0.78257 0.78947 0.77182 1.21175 1.22478 1.19222 0.91647 0.90178 0.88054 0.87239 0.90028 0.90220 0.85219 0.85184 0.90714 0.85437 0.87798 0.91105 0.93382 0.93361 0.90488 0.92420 0.96807 0.98070 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.26 71.24 0.73 -0.67 16 2 C 0.08 1.91 7.22 43.10 0.31 2.22 16 3 N -0.34 -8.99 12.70 -47.38 -0.60 -9.59 16 4 N -0.48 -9.93 7.36 -48.00 -0.35 -10.29 16 5 H 0.45 6.41 8.96 -213.33 -1.91 4.49 16 6 C 0.10 2.02 7.21 41.41 0.30 2.32 16 7 C -0.09 -1.15 10.04 71.24 0.72 -0.44 16 8 C -0.24 -5.23 4.59 -20.15 -0.09 -5.33 16 9 C -0.05 -0.80 3.90 29.10 0.11 -0.68 16 10 C 0.50 13.45 7.56 87.65 0.66 14.12 16 11 O -0.58 -22.09 15.32 -3.05 -0.05 -22.14 16 12 N -0.59 -15.59 2.76 -805.51 -2.22 -17.82 16 13 C 0.10 1.68 5.97 86.78 0.52 2.20 16 14 C -0.12 -2.43 6.10 30.59 0.19 -2.25 16 15 C -0.12 -3.87 5.31 30.55 0.16 -3.71 16 16 C 0.16 6.27 3.30 44.83 0.15 6.42 16 17 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 5.88 2.76 45.87 0.13 6.01 16 19 H 0.06 2.51 7.10 -2.39 -0.02 2.49 16 20 C -0.13 -5.31 6.45 31.31 0.20 -5.11 16 21 C 0.19 9.93 5.39 86.66 0.47 10.40 16 22 N -0.62 -31.99 2.94 -671.82 -1.97 -33.96 16 23 C -0.24 -13.29 10.26 84.03 0.86 -12.43 16 24 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 25 C -0.06 -3.74 5.48 84.86 0.47 -3.28 16 26 N -0.95 -58.27 10.34 21.65 0.22 -58.04 16 27 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 30 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.29 7.25 -2.38 -0.02 1.28 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.15 7.77 -2.39 -0.02 1.13 16 37 H 0.13 1.29 7.62 -2.38 -0.02 1.27 16 38 H 0.13 1.35 6.38 -2.38 -0.02 1.33 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 1.05 5.68 -2.39 -0.01 1.04 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.69 8.02 -2.38 -0.02 1.67 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.01 0.78 7.41 -2.39 -0.02 0.76 16 48 H 0.00 0.06 7.48 -2.38 -0.02 0.04 16 49 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -82.51 383.45 1.98 -80.53 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.95 Total: 13.25 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.88 Total: 9.79 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -4.93 Total: -129.69 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -82.51 1.98 -80.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049886607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.747 kcal (2) G-P(sol) polarization free energy of solvation -82.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds