Wall clock time and date at job start Tue Mar 31 2020 16:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39874 * 125.90032 * 2 1 4 4 C 1.35312 * 107.92019 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.12760 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47279 * 95.01733 * 5 4 3 7 7 C 1.48179 * 110.99869 * 190.00013 * 6 5 4 8 8 C 1.52856 * 85.78798 * 136.84918 * 7 6 5 9 9 C 1.48186 * 111.00104 * 289.66746 * 6 5 4 10 10 C 1.52860 * 121.46032 * 211.04968 * 8 7 6 11 11 N 1.47800 * 85.71948 * 211.19418 * 10 8 7 12 12 C 1.34784 * 134.35821 * 203.77401 * 11 10 8 13 13 O 1.21277 * 119.99523 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00049 * 0.02684 * 12 11 10 15 15 C 1.52995 * 109.46968 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47356 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99442 * 0.02562 * 16 15 14 18 18 C 1.37867 * 120.00366 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00281 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00004 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47118 * 90.00029 * 20 18 16 22 22 H 1.48503 * 109.47014 * 209.99411 * 20 18 16 23 23 H 1.48495 * 109.47079 * 329.99599 * 20 18 16 24 24 C 1.47799 * 91.28030 * 23.78826 * 11 10 8 25 25 N 1.34948 * 107.74896 * 0.22284 * 4 3 2 26 26 C 1.46502 * 126.03881 * 179.77275 * 25 4 3 27 27 N 1.30832 * 125.89940 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47167 * 89.99452 * 1 2 3 29 29 H 1.08997 * 109.47168 * 209.99763 * 1 2 3 30 30 H 1.09003 * 109.46871 * 329.99680 * 1 2 3 31 31 H 1.07999 * 126.03869 * 359.95018 * 3 2 1 32 32 H 1.08997 * 109.46708 * 335.01926 * 5 4 3 33 33 H 1.08997 * 109.47158 * 215.01964 * 5 4 3 34 34 H 1.09004 * 113.82229 * 22.63435 * 7 6 5 35 35 H 1.08997 * 113.93389 * 251.07290 * 7 6 5 36 36 H 1.08998 * 113.82337 * 108.93551 * 9 6 5 37 37 H 1.08997 * 113.81889 * 337.36819 * 9 6 5 38 38 H 1.08998 * 113.82647 * 325.39369 * 10 8 7 39 39 H 1.08998 * 113.83191 * 96.98957 * 10 8 7 40 40 H 1.09000 * 109.46733 * 299.99726 * 14 12 11 41 41 H 1.09002 * 109.47238 * 60.00179 * 14 12 11 42 42 H 1.08998 * 109.47444 * 300.00214 * 15 14 12 43 43 H 1.09003 * 109.47485 * 60.00082 * 15 14 12 44 44 H 0.97003 * 120.00136 * 179.97438 * 19 18 16 45 45 H 1.09000 * 113.83988 * 222.00858 * 24 11 10 46 46 H 1.09005 * 113.82838 * 90.40827 * 24 11 10 47 47 H 1.08994 * 109.46910 * 90.00588 * 26 25 4 48 48 H 1.08998 * 109.46832 * 210.00621 * 26 25 4 49 49 H 1.08998 * 109.47150 * 330.00552 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8351 1.5989 0.0002 6 7 5.3026 1.7888 1.3799 7 6 6.3486 2.8362 1.4467 8 6 5.6122 3.3335 2.6905 9 6 4.3630 2.6406 2.1464 10 6 5.6009 4.8135 3.0725 11 7 5.5276 4.3382 4.4701 12 6 5.0831 4.8724 5.6250 13 8 5.1494 4.2334 6.6536 14 6 4.5037 6.2634 5.6380 15 6 4.0780 6.6252 7.0623 16 6 3.4991 8.0166 7.0755 17 1 3.4404 8.5857 6.1594 18 6 3.0436 8.5626 8.2567 19 7 2.5389 9.7770 8.2683 20 14 3.1445 7.5780 9.8409 21 1 4.4443 7.8449 10.5077 22 1 2.0344 7.9767 10.7431 23 1 3.0351 6.1297 9.5315 24 6 6.1362 3.0441 4.0968 25 7 3.6088 -0.6341 -0.0041 26 6 4.7900 -1.5008 -0.0099 27 7 2.2742 -1.0598 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9924 2.1598 -0.0008 32 1 4.5834 2.5662 -0.4345 33 1 5.6230 1.1297 -0.5890 34 1 6.3246 3.5363 0.6115 35 1 7.3475 2.4511 1.6512 36 1 3.7951 2.0992 2.9030 37 1 3.7406 3.2817 1.5221 38 1 6.5265 5.3371 2.8333 39 1 4.7100 5.3471 2.7414 40 1 5.2550 6.9731 5.2916 41 1 3.6363 6.3020 4.9791 42 1 3.3266 5.9154 7.4083 43 1 4.9451 6.5866 7.7217 44 1 2.2181 10.1610 9.0993 45 1 5.6673 2.1831 4.5731 46 1 7.2239 3.0322 4.1678 47 1 5.0853 -1.7193 1.0163 48 1 4.5551 -2.4314 -0.5265 49 1 5.6082 -0.9964 -0.5239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271254708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:50 Heat of formation + Delta-G solvation = 113.837232 kcal Electronic energy + Delta-G solvation = -27938.089422 eV Core-core repulsion = 24097.435275 eV Total energy + Delta-G solvation = -3840.654146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79849 -41.12840 -38.85348 -36.75110 -34.29862 -33.47338 -32.21708 -31.30877 -29.92916 -29.24811 -27.42735 -26.71080 -26.52114 -25.66942 -25.26063 -23.04909 -20.88848 -20.70439 -19.56526 -18.87143 -18.54222 -17.18233 -17.01378 -16.53561 -16.17972 -15.98830 -15.91106 -15.25573 -14.97841 -14.77953 -14.30420 -14.16382 -13.98540 -13.79266 -13.69627 -13.33496 -13.16692 -12.80993 -12.69825 -12.63480 -12.57137 -12.44983 -12.39108 -12.23350 -11.72068 -11.52507 -11.36134 -11.03490 -10.99296 -10.95274 -10.77612 -10.16006 -10.04234 -9.77486 -9.49889 -9.25323 -9.20285 -9.12595 -8.75248 -8.56022 -8.49514 -6.02887 -4.01617 1.53453 2.23116 2.48324 2.90740 3.09367 3.38501 3.43932 3.45056 3.56608 3.93920 3.99940 4.15441 4.19836 4.42043 4.51491 4.55008 4.73739 4.81219 4.85790 4.93064 4.98185 5.03929 5.05991 5.13677 5.18132 5.30910 5.31710 5.32729 5.34381 5.37557 5.41587 5.52401 5.59161 5.61596 5.64669 5.72958 5.78314 5.92655 5.96150 6.10602 6.17596 6.42923 6.47886 6.69382 6.72912 7.36453 7.43722 7.48913 7.77035 7.90725 8.49057 8.62444 8.99739 9.60276 11.09861 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.002238 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.103660 B =12510.257233 C =13411.345711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.072 3.928 3 C -0.265 4.265 4 C 0.094 3.906 5 C 0.082 3.918 6 N -0.475 5.475 7 C 0.021 3.979 8 C -0.128 4.128 9 C 0.038 3.962 10 C 0.118 3.882 11 N -0.652 5.652 12 C 0.534 3.466 13 O -0.538 6.538 14 C -0.114 4.114 15 C 0.001 3.999 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.137 3.863 25 N -0.363 5.363 26 C 0.105 3.895 27 N -0.298 5.298 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.019 0.981 44 H 0.263 0.737 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -19.663 -24.494 32.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.295 4.295 4 C -0.034 4.034 5 C -0.048 4.048 6 N -0.197 5.197 7 C -0.108 4.108 8 C -0.129 4.129 9 C -0.090 4.090 10 C -0.006 4.006 11 N -0.390 5.390 12 C 0.326 3.674 13 O -0.414 6.414 14 C -0.154 4.154 15 C -0.037 4.037 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.014 3.986 25 N -0.144 5.144 26 C -0.036 4.036 27 N -0.121 5.121 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.527 -21.830 -23.391 32.654 hybrid contribution -0.050 1.275 0.418 1.343 sum 6.477 -20.555 -22.973 31.499 Atomic orbital electron populations 1.20182 0.86655 1.03458 1.02853 1.22295 0.96958 0.90700 0.99394 1.21133 0.90925 0.99822 1.17661 1.20745 0.96264 0.84626 1.01753 1.21217 0.93115 0.97640 0.92823 1.68681 1.06647 1.34788 1.09623 1.23812 0.97573 0.92824 0.96623 1.23426 0.97968 0.96366 0.95177 1.23648 0.94141 0.93896 0.97323 1.22987 1.02627 0.94832 0.80168 1.50230 1.63060 1.17947 1.07795 1.21307 0.76424 0.89103 0.80599 1.90664 1.56317 1.63051 1.31374 1.21610 1.00739 0.89936 1.03104 1.19386 0.96862 0.97133 0.90304 1.21094 1.40505 0.98310 0.96289 0.90948 1.24965 0.94457 0.94732 0.99068 1.69911 1.41911 1.14974 1.27446 0.86801 0.77775 0.81682 0.83351 1.20233 1.21404 1.18519 1.22629 0.98242 0.88165 0.89529 1.48333 1.05458 1.04128 1.56517 1.21802 0.83700 0.94455 1.03681 1.77325 0.86247 1.22719 1.25801 0.90615 0.90982 0.90283 0.83756 0.91152 0.89388 0.90149 0.88485 0.88872 0.90037 0.89351 0.89575 0.89803 0.89774 0.95809 0.96311 0.92713 0.89992 0.89772 0.90431 0.89643 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 36.01 0.38 -0.17 16 2 C 0.07 0.76 7.22 -82.41 -0.59 0.17 16 3 C -0.27 -2.55 10.49 -40.01 -0.42 -2.97 16 4 C 0.09 0.85 6.00 -82.26 -0.49 0.36 16 5 C 0.08 0.51 4.99 -4.97 -0.02 0.49 16 6 N -0.47 -3.44 6.25 -245.93 -1.54 -4.98 16 7 C 0.02 0.11 7.76 -3.19 -0.02 0.09 16 8 C -0.13 -1.03 1.40 -155.42 -0.22 -1.25 16 9 C 0.04 0.32 7.12 -3.19 -0.02 0.30 16 10 C 0.12 1.08 8.39 -3.40 -0.03 1.05 16 11 N -0.65 -9.14 3.61 -184.59 -0.67 -9.81 16 12 C 0.53 10.24 8.06 -10.98 -0.09 10.15 16 13 O -0.54 -12.60 16.71 5.56 0.09 -12.51 16 14 C -0.11 -2.28 5.38 -27.89 -0.15 -2.43 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 16 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 17 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 20 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 24 C 0.14 1.51 8.61 -3.41 -0.03 1.48 16 25 N -0.36 -3.59 4.01 -63.89 -0.26 -3.85 16 26 C 0.11 0.66 11.27 59.85 0.67 1.33 16 27 N -0.30 -3.57 12.58 33.67 0.42 -3.15 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.07 0.36 7.71 -51.93 -0.40 -0.04 16 33 H 0.09 0.43 7.23 -51.93 -0.38 0.05 16 34 H 0.08 0.32 7.80 -51.93 -0.40 -0.09 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 43 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.34 7.14 -51.93 -0.37 -0.03 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -37.80 403.51 -9.55 -47.35 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -8.22 Total: -4.99 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.57 Total: -4.96 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -1.26 Total: -49.12 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.80 -9.55 -47.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271254708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.185 kcal (2) G-P(sol) polarization free energy of solvation -37.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds