Wall clock time and date at job start Tue Mar 31 2020 18:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31816 * 119.16771 * 2 1 4 4 C 1.32184 * 120.64460 * 179.88633 * 3 2 1 5 5 C 1.39018 * 119.27469 * 0.05154 * 4 3 2 6 6 C 1.37770 * 118.46448 * 0.14770 * 5 4 3 7 7 N 1.31602 * 119.16201 * 180.02562 * 2 1 3 8 8 C 1.50443 * 122.58347 * 179.38350 * 6 5 4 9 9 C 1.52806 * 110.44655 * 17.75436 * 8 6 5 10 10 C 1.53310 * 108.51166 * 308.94409 * 9 8 6 11 11 C 1.50341 * 118.74137 * 180.19522 * 5 4 3 12 12 H 1.08997 * 109.30914 * 77.41714 * 11 5 4 13 13 N 1.46506 * 109.30301 * 317.81886 * 11 5 4 14 14 C 1.34777 * 119.99880 * 85.00399 * 13 11 5 15 15 O 1.21592 * 119.99793 * 359.97438 * 14 13 11 16 16 N 1.34774 * 119.99906 * 179.97438 * 14 13 11 17 17 C 1.46507 * 119.99765 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46773 * 180.02562 * 17 16 14 19 19 C 1.52994 * 109.47090 * 60.00035 * 18 17 16 20 20 C 1.53000 * 109.46978 * 300.00049 * 18 17 16 21 21 C 1.50695 * 109.46637 * 180.02562 * 18 17 16 22 22 H 1.08004 * 120.00546 * 0.27598 * 21 18 17 23 23 C 1.37885 * 119.99721 * 179.97438 * 21 18 17 24 24 N 1.31514 * 120.00035 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99853 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46986 * 90.00256 * 25 23 21 27 27 H 1.48496 * 109.47029 * 210.00273 * 25 23 21 28 28 H 1.48499 * 109.47352 * 330.00102 * 25 23 21 29 29 H 1.08999 * 109.47455 * 89.99031 * 1 2 3 30 30 H 1.08992 * 109.47593 * 209.99974 * 1 2 3 31 31 H 1.09005 * 109.46607 * 329.99816 * 1 2 3 32 32 H 1.08003 * 120.36428 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.30811 * 138.05554 * 8 6 5 34 34 H 1.08997 * 109.30624 * 257.65247 * 8 6 5 35 35 H 1.09000 * 109.63230 * 68.66331 * 9 8 6 36 36 H 1.09001 * 109.62670 * 189.04923 * 9 8 6 37 37 H 1.08999 * 109.63482 * 310.08632 * 10 9 8 38 38 H 1.09001 * 109.63806 * 189.48342 * 10 9 8 39 39 H 0.96999 * 120.00076 * 264.99378 * 13 11 5 40 40 H 0.96999 * 120.00050 * 359.97438 * 16 14 13 41 41 H 1.09000 * 109.46860 * 60.00232 * 17 16 14 42 42 H 1.08997 * 109.47067 * 299.99583 * 17 16 14 43 43 H 1.08998 * 109.46887 * 180.02562 * 19 18 17 44 44 H 1.09005 * 109.47504 * 299.99829 * 19 18 17 45 45 H 1.09002 * 109.47168 * 60.00180 * 19 18 17 46 46 H 1.09005 * 109.47057 * 300.00061 * 20 18 17 47 47 H 1.08996 * 109.47481 * 59.99930 * 20 18 17 48 48 H 1.08996 * 109.46841 * 180.02562 * 20 18 17 49 49 H 0.97000 * 119.99706 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4708 1.1851 0.0023 5 6 4.1816 -0.0096 0.0036 6 6 3.4765 -1.1932 -0.0007 7 7 2.1483 -1.1492 -0.0005 8 6 4.1509 -2.5380 -0.0134 9 6 5.6114 -2.4068 0.4164 10 6 6.2676 -1.3022 -0.4201 11 6 5.6841 0.0431 0.0106 12 1 6.0318 0.2780 1.0166 13 7 6.1365 1.0856 -0.9140 14 6 6.2165 2.3656 -0.4994 15 8 5.9128 2.6550 0.6418 16 7 6.6331 3.3245 -1.3499 17 6 6.7196 4.7159 -0.8994 18 6 7.2148 5.5946 -2.0499 19 6 6.2371 5.4981 -3.2227 20 6 8.5975 5.1167 -2.4979 21 6 7.3043 7.0257 -1.5863 22 1 7.0392 7.2822 -0.5712 23 6 7.7306 8.0068 -2.4563 24 7 8.0587 7.6937 -3.6908 25 14 7.8409 9.7809 -1.8818 26 1 9.1927 10.0370 -1.3228 27 1 7.6004 10.6893 -3.0316 28 1 6.8174 10.0266 -0.8344 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 3.9926 2.1307 0.0027 33 1 3.6322 -3.2078 0.6725 34 1 4.1105 -2.9519 -1.0209 35 1 5.6600 -2.1439 1.4731 36 1 6.1283 -3.3519 0.2500 37 1 6.0594 -1.4703 -1.4767 38 1 7.3444 -1.3053 -0.2510 39 1 6.3785 0.8547 -1.8245 40 1 6.8757 3.0935 -2.2602 41 1 7.4158 4.7846 -0.0635 42 1 5.7344 5.0565 -0.5807 43 1 6.5902 6.1237 -4.0424 44 1 6.1727 4.4628 -3.5579 45 1 5.2520 5.8385 -2.9035 46 1 9.2941 5.1854 -1.6623 47 1 8.5332 4.0815 -2.8330 48 1 8.9504 5.7429 -3.3172 49 1 8.3582 8.3840 -4.3029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838483646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:15 Heat of formation + Delta-G solvation = 2.170079 kcal Electronic energy + Delta-G solvation = -29050.111077 eV Core-core repulsion = 25204.614680 eV Total energy + Delta-G solvation = -3845.496397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.60984 -39.77361 -37.71127 -36.43661 -34.68298 -33.49578 -32.95591 -32.42906 -30.93135 -29.38925 -28.28960 -25.73849 -25.64591 -25.08084 -24.50485 -23.11030 -22.67812 -20.68713 -20.22299 -18.82580 -18.25434 -17.80857 -16.71363 -16.27515 -15.82822 -15.72450 -15.20004 -14.78303 -14.70934 -14.35930 -14.03499 -13.97390 -13.78602 -13.53960 -13.18094 -12.99621 -12.88995 -12.67282 -12.53049 -12.20438 -12.13677 -11.89193 -11.68641 -11.40723 -11.29088 -11.21008 -10.89804 -10.80824 -10.69553 -10.48486 -10.39947 -10.22606 -9.92541 -9.64772 -9.36357 -9.29924 -9.18647 -9.11851 -8.80471 -8.43945 -8.27932 -6.02960 -4.12871 0.78918 1.02985 2.92971 3.28296 3.35398 3.39919 3.43697 3.65122 3.72057 4.05224 4.27251 4.34302 4.38877 4.52566 4.54355 4.71362 4.79941 5.02086 5.15777 5.16385 5.23930 5.24088 5.35580 5.39026 5.46683 5.52419 5.60198 5.69024 5.77264 5.85200 5.94334 6.17069 6.33643 6.41347 6.46936 6.49777 6.76534 6.80794 6.86722 6.96280 7.01438 7.02619 7.22433 7.37039 7.54586 7.69158 8.00043 8.06492 8.10933 8.33578 8.39791 8.85258 8.91082 9.53076 10.98490 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.002685 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.744777 B =10426.438385 C =11386.498791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.311 3.689 3 N -0.522 5.522 4 C 0.175 3.825 5 C -0.207 4.207 6 C 0.184 3.816 7 N -0.528 5.528 8 C -0.071 4.071 9 C -0.115 4.115 10 C -0.127 4.127 11 C 0.216 3.784 12 H 0.104 0.896 13 N -0.749 5.749 14 C 0.695 3.305 15 O -0.595 6.595 16 N -0.729 5.729 17 C 0.149 3.851 18 C 0.057 3.943 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.506 4.506 22 H 0.058 0.942 23 C 0.066 3.934 24 N -0.886 5.886 25 Si 0.893 3.107 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.397 0.603 40 H 0.395 0.605 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.005 0.995 48 H 0.085 0.915 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -21.803 3.275 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.236 5.236 4 C 0.008 3.992 5 C -0.212 4.212 6 C 0.039 3.961 7 N -0.243 5.243 8 C -0.109 4.109 9 C -0.154 4.154 10 C -0.165 4.165 11 C 0.109 3.891 12 H 0.122 0.878 13 N -0.405 5.405 14 C 0.395 3.605 15 O -0.475 6.475 16 N -0.383 5.383 17 C 0.026 3.974 18 C 0.056 3.944 19 C -0.188 4.188 20 C -0.188 4.188 21 C -0.544 4.544 22 H 0.076 0.924 23 C -0.135 4.135 24 N -0.525 5.525 25 Si 0.721 3.279 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.199 1.199 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.195 0.805 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.230 0.770 40 H 0.229 0.771 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.024 0.976 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.024 0.976 48 H 0.104 0.896 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.381 -21.374 4.154 22.991 hybrid contribution 1.190 0.921 -0.635 1.633 sum -6.192 -20.453 3.520 21.658 Atomic orbital electron populations 1.20534 0.85882 1.03988 1.03736 1.23250 0.98178 0.83641 0.90566 1.68384 1.10159 1.30186 1.14888 1.23840 0.89091 0.99445 0.86802 1.21600 0.99009 0.94851 1.05785 1.21269 0.89261 0.95122 0.90420 1.68205 1.09213 1.30701 1.16204 1.20422 0.94995 0.91907 1.03583 1.21551 0.94155 0.99146 1.00544 1.21862 1.00997 0.92835 1.00791 1.19294 0.87389 0.87043 0.95356 0.87830 1.45285 1.73364 1.06211 1.15639 1.16140 0.78631 0.80512 0.85201 1.90906 1.56896 1.81543 1.18167 1.45561 1.69750 1.08505 1.14481 1.21637 1.00371 0.76728 0.98657 1.18354 0.92185 0.93457 0.90396 1.21821 0.98227 0.97109 1.01609 1.21829 0.98547 0.96594 1.01833 1.20988 1.44582 0.91044 0.97830 0.92376 1.24877 0.94918 0.98842 0.94853 1.69803 1.45029 1.32943 1.04718 0.86572 0.78444 0.84580 0.78293 1.20725 1.21280 1.19852 0.89777 0.89844 0.89634 0.80454 0.89119 0.89189 0.90889 0.89907 0.90791 0.89886 0.76950 0.77053 0.92778 0.92785 0.89644 0.97628 0.95398 0.95437 0.97584 0.89632 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.32 36.00 0.37 -0.43 16 2 C 0.31 4.25 7.64 -157.34 -1.20 3.04 16 3 N -0.52 -8.24 10.34 -10.69 -0.11 -8.35 16 4 C 0.18 2.74 10.30 -17.11 -0.18 2.56 16 5 C -0.21 -2.65 5.54 -104.68 -0.58 -3.23 16 6 C 0.18 2.15 6.62 -82.43 -0.55 1.61 16 7 N -0.53 -6.90 10.22 -7.18 -0.07 -6.97 16 8 C -0.07 -0.54 5.95 -28.11 -0.17 -0.71 16 9 C -0.12 -0.70 5.97 -26.67 -0.16 -0.86 16 10 C -0.13 -0.89 5.44 -26.66 -0.14 -1.04 16 11 C 0.22 2.36 2.60 -69.34 -0.18 2.18 16 12 H 0.10 1.30 7.55 -51.93 -0.39 0.91 16 13 N -0.75 -8.94 4.84 -60.07 -0.29 -9.23 16 14 C 0.69 11.36 7.11 -86.92 -0.62 10.74 16 15 O -0.60 -11.80 14.25 5.28 0.08 -11.73 16 16 N -0.73 -12.39 4.96 -65.22 -0.32 -12.71 16 17 C 0.15 3.09 4.50 -4.04 -0.02 3.07 16 18 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 19 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 20 C -0.13 -2.88 8.08 37.16 0.30 -2.57 16 21 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 22 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 23 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 24 N -0.89 -23.46 9.35 55.43 0.52 -22.94 16 25 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.18 3.14 4.73 -52.48 -0.25 2.89 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.74 8.62 -40.82 -0.35 3.39 16 40 H 0.39 6.03 6.18 -40.82 -0.25 5.78 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 44 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 48 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 49 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -30.47 381.41 -10.37 -40.84 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.62 Total: 8.48 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -3.27 Total: 1.21 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.28 Total: -60.20 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.47 -10.37 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838483646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.009 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds