Wall clock time and date at job start Tue Mar 31 2020 18:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31816 * 119.16771 * 2 1 4 4 C 1.32184 * 120.64460 * 179.88633 * 3 2 1 5 5 C 1.39018 * 119.27469 * 0.05154 * 4 3 2 6 6 C 1.37770 * 118.46448 * 0.14770 * 5 4 3 7 7 N 1.31602 * 119.16201 * 180.02562 * 2 1 3 8 8 C 1.50443 * 122.58347 * 179.38350 * 6 5 4 9 9 C 1.52806 * 110.44655 * 17.75436 * 8 6 5 10 10 C 1.53310 * 108.51166 * 308.94409 * 9 8 6 11 11 C 1.50341 * 118.74137 * 180.19522 * 5 4 3 12 12 H 1.08997 * 109.30914 * 77.41714 * 11 5 4 13 13 N 1.46506 * 109.30301 * 317.81886 * 11 5 4 14 14 C 1.34777 * 119.99880 * 85.00399 * 13 11 5 15 15 O 1.21592 * 119.99793 * 359.97438 * 14 13 11 16 16 N 1.34774 * 119.99906 * 179.97438 * 14 13 11 17 17 C 1.46507 * 119.99765 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46773 * 180.02562 * 17 16 14 19 19 C 1.52994 * 109.47090 * 60.00035 * 18 17 16 20 20 C 1.53000 * 109.46978 * 300.00049 * 18 17 16 21 21 C 1.50695 * 109.46637 * 180.02562 * 18 17 16 22 22 H 1.08004 * 120.00546 * 0.27598 * 21 18 17 23 23 C 1.37885 * 119.99721 * 179.97438 * 21 18 17 24 24 N 1.31514 * 120.00035 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 119.99853 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46986 * 90.00256 * 25 23 21 27 27 H 1.48496 * 109.47029 * 210.00273 * 25 23 21 28 28 H 1.48499 * 109.47352 * 330.00102 * 25 23 21 29 29 H 1.08999 * 109.47455 * 89.99031 * 1 2 3 30 30 H 1.08992 * 109.47593 * 209.99974 * 1 2 3 31 31 H 1.09005 * 109.46607 * 329.99816 * 1 2 3 32 32 H 1.08003 * 120.36428 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.30811 * 138.05554 * 8 6 5 34 34 H 1.08997 * 109.30624 * 257.65247 * 8 6 5 35 35 H 1.09000 * 109.63230 * 68.66331 * 9 8 6 36 36 H 1.09001 * 109.62670 * 189.04923 * 9 8 6 37 37 H 1.08999 * 109.63482 * 310.08632 * 10 9 8 38 38 H 1.09001 * 109.63806 * 189.48342 * 10 9 8 39 39 H 0.96999 * 120.00076 * 264.99378 * 13 11 5 40 40 H 0.96999 * 120.00050 * 359.97438 * 16 14 13 41 41 H 1.09000 * 109.46860 * 60.00232 * 17 16 14 42 42 H 1.08997 * 109.47067 * 299.99583 * 17 16 14 43 43 H 1.08998 * 109.46887 * 180.02562 * 19 18 17 44 44 H 1.09005 * 109.47504 * 299.99829 * 19 18 17 45 45 H 1.09002 * 109.47168 * 60.00180 * 19 18 17 46 46 H 1.09005 * 109.47057 * 300.00061 * 20 18 17 47 47 H 1.08996 * 109.47481 * 59.99930 * 20 18 17 48 48 H 1.08996 * 109.46841 * 180.02562 * 20 18 17 49 49 H 0.97000 * 119.99706 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4708 1.1851 0.0023 5 6 4.1816 -0.0096 0.0036 6 6 3.4765 -1.1932 -0.0007 7 7 2.1483 -1.1492 -0.0005 8 6 4.1509 -2.5380 -0.0134 9 6 5.6114 -2.4068 0.4164 10 6 6.2676 -1.3022 -0.4201 11 6 5.6841 0.0431 0.0106 12 1 6.0318 0.2780 1.0166 13 7 6.1365 1.0856 -0.9140 14 6 6.2165 2.3656 -0.4994 15 8 5.9128 2.6550 0.6418 16 7 6.6331 3.3245 -1.3499 17 6 6.7196 4.7159 -0.8994 18 6 7.2148 5.5946 -2.0499 19 6 6.2371 5.4981 -3.2227 20 6 8.5975 5.1167 -2.4979 21 6 7.3043 7.0257 -1.5863 22 1 7.0392 7.2822 -0.5712 23 6 7.7306 8.0068 -2.4563 24 7 8.0587 7.6937 -3.6908 25 14 7.8409 9.7809 -1.8818 26 1 9.1927 10.0370 -1.3228 27 1 7.6004 10.6893 -3.0316 28 1 6.8174 10.0266 -0.8344 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 3.9926 2.1307 0.0027 33 1 3.6322 -3.2078 0.6725 34 1 4.1105 -2.9519 -1.0209 35 1 5.6600 -2.1439 1.4731 36 1 6.1283 -3.3519 0.2500 37 1 6.0594 -1.4703 -1.4767 38 1 7.3444 -1.3053 -0.2510 39 1 6.3785 0.8547 -1.8245 40 1 6.8757 3.0935 -2.2602 41 1 7.4158 4.7846 -0.0635 42 1 5.7344 5.0565 -0.5807 43 1 6.5902 6.1237 -4.0424 44 1 6.1727 4.4628 -3.5579 45 1 5.2520 5.8385 -2.9035 46 1 9.2941 5.1854 -1.6623 47 1 8.5332 4.0815 -2.8330 48 1 8.9504 5.7429 -3.3172 49 1 8.3582 8.3840 -4.3029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838483646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:14 Heat of formation + Delta-G solvation = -17.359827 kcal Electronic energy + Delta-G solvation = -29050.957958 eV Core-core repulsion = 25204.614680 eV Total energy + Delta-G solvation = -3846.343278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59811 -41.06659 -38.76025 -37.96524 -35.74081 -35.06041 -34.15916 -33.23559 -32.66021 -30.39097 -29.06103 -27.56077 -27.44108 -26.66266 -25.63691 -23.93255 -23.66297 -21.98214 -20.99943 -20.59027 -19.51814 -18.85570 -17.80812 -17.75178 -17.26766 -16.79887 -16.57511 -16.22280 -15.95376 -15.51631 -15.33052 -14.81780 -14.78215 -14.67640 -14.60213 -14.35647 -14.01309 -13.81015 -13.74150 -13.27161 -13.19766 -13.09891 -12.90743 -12.69083 -12.64334 -12.59636 -12.39376 -12.24849 -12.14023 -11.93020 -11.60582 -11.48111 -11.41626 -11.35827 -11.14643 -10.70631 -10.45620 -10.37781 -10.23584 -10.15936 -9.74751 -8.02662 -6.18036 -0.21377 -0.00932 1.42089 1.45022 1.53126 1.74618 2.12419 2.45848 2.63174 2.89565 3.08803 3.21166 3.33122 3.43255 3.62829 3.69047 4.03538 4.08954 4.23528 4.31117 4.39754 4.46298 4.48244 4.53994 4.65433 4.66106 4.71514 4.86331 4.89635 4.93950 4.99780 5.02968 5.05965 5.10195 5.17544 5.18023 5.20531 5.31315 5.38110 5.45770 5.50711 5.61604 5.67264 5.67758 5.95587 6.03834 6.15696 6.22403 6.43891 6.86406 7.03985 7.11898 7.49711 7.58259 8.96249 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.002685 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.744777 B =10426.438385 C =11386.498791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.297 3.703 3 N -0.553 5.553 4 C 0.148 3.852 5 C -0.208 4.208 6 C 0.187 3.813 7 N -0.533 5.533 8 C -0.069 4.069 9 C -0.109 4.109 10 C -0.118 4.118 11 C 0.216 3.784 12 H 0.085 0.915 13 N -0.729 5.729 14 C 0.696 3.304 15 O -0.632 6.632 16 N -0.724 5.724 17 C 0.168 3.832 18 C 0.053 3.947 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.529 4.529 22 H 0.044 0.956 23 C 0.029 3.971 24 N -0.899 5.899 25 Si 0.944 3.056 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.277 1.277 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.413 0.587 40 H 0.406 0.594 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.014 0.986 46 H 0.019 0.981 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -24.950 2.604 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 N -0.268 5.268 4 C -0.017 4.017 5 C -0.214 4.214 6 C 0.041 3.959 7 N -0.248 5.248 8 C -0.106 4.106 9 C -0.148 4.148 10 C -0.156 4.156 11 C 0.109 3.891 12 H 0.103 0.897 13 N -0.385 5.385 14 C 0.396 3.604 15 O -0.515 6.515 16 N -0.379 5.379 17 C 0.044 3.956 18 C 0.053 3.947 19 C -0.177 4.177 20 C -0.177 4.177 21 C -0.568 4.568 22 H 0.062 0.938 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.770 3.230 26 H -0.204 1.204 27 H -0.208 1.208 28 H -0.202 1.202 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.250 0.750 40 H 0.242 0.758 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.016 -24.563 3.449 25.777 hybrid contribution 1.020 1.844 -0.394 2.144 sum -5.996 -22.719 3.055 23.695 Atomic orbital electron populations 1.20650 0.83491 1.04858 1.04821 1.23944 0.99759 0.83306 0.90009 1.68334 1.10479 1.31709 1.16322 1.23604 0.89618 0.99657 0.88868 1.21736 0.99851 0.94291 1.05519 1.22022 0.88974 0.96570 0.88301 1.68351 1.09926 1.30160 1.16394 1.20610 0.95632 0.89336 1.05046 1.21585 0.93134 1.00140 0.99906 1.21893 1.01684 0.90217 1.01823 1.19500 0.86442 0.88670 0.94442 0.89713 1.45105 1.72008 1.04707 1.16653 1.16220 0.78105 0.81591 0.84455 1.90885 1.58245 1.82386 1.19941 1.45227 1.70346 1.07255 1.15078 1.21121 0.98556 0.78558 0.97409 1.18335 0.92945 0.92419 0.91026 1.21659 0.97129 0.98482 1.00447 1.21660 0.97506 0.98030 1.00552 1.21289 1.44911 0.93191 0.97420 0.93775 1.25434 0.94841 1.01719 0.95073 1.69904 1.45119 1.33633 1.05097 0.85783 0.78244 0.81129 0.77806 1.20383 1.20839 1.20188 0.88441 0.88119 0.89562 0.83195 0.88087 0.87211 0.91471 0.86596 0.89219 0.88328 0.75041 0.75771 0.94342 0.94886 0.91909 0.94535 0.96635 0.96229 0.94302 0.91965 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.32 71.24 0.74 -0.74 16 2 C 0.30 8.02 7.64 138.80 1.06 9.08 16 3 N -0.55 -18.04 10.34 -187.73 -1.94 -19.98 16 4 C 0.15 4.82 10.30 84.83 0.87 5.69 16 5 C -0.21 -5.21 5.54 -19.90 -0.11 -5.32 16 6 C 0.19 4.02 6.62 42.21 0.28 4.30 16 7 N -0.53 -13.21 10.22 -176.64 -1.80 -15.01 16 8 C -0.07 -0.79 5.95 29.70 0.18 -0.62 16 9 C -0.11 -0.87 5.97 30.63 0.18 -0.69 16 10 C -0.12 -1.23 5.44 30.64 0.17 -1.07 16 11 C 0.22 4.42 2.60 44.08 0.11 4.54 16 12 H 0.09 2.10 7.55 -2.39 -0.02 2.08 16 13 N -0.73 -16.49 4.84 -462.21 -2.24 -18.73 16 14 C 0.70 22.82 7.11 179.06 1.27 24.10 16 15 O -0.63 -26.00 14.25 -4.01 -0.06 -26.05 16 16 N -0.72 -24.38 4.96 -478.51 -2.37 -26.75 16 17 C 0.17 7.15 4.50 86.38 0.39 7.54 16 18 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 19 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 20 C -0.12 -5.23 8.08 71.98 0.58 -4.64 16 21 C -0.53 -28.15 8.01 25.60 0.21 -27.95 16 22 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 23 C 0.03 1.54 5.15 84.66 0.44 1.97 16 24 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 25 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.15 5.66 4.73 -2.91 -0.01 5.65 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 36 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.41 6.75 8.62 -92.71 -0.80 5.95 16 40 H 0.41 11.70 6.18 -92.71 -0.57 11.12 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 44 H 0.04 1.35 6.86 -2.38 -0.02 1.34 16 45 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 48 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 49 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -69.19 381.41 0.34 -68.85 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.39 Total: 26.62 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.92 Total: 13.89 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -8.16 Total: -128.19 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -69.19 0.34 -68.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838483646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.489 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds