Wall clock time and date at job start Tue Mar 31 2020 16:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32135 * 119.90202 * 2 1 4 4 C 1.32078 * 120.07232 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.06319 * 179.97438 * 4 3 2 6 6 C 1.39434 * 119.87324 * 0.02562 * 4 3 2 7 7 C 1.48154 * 120.09621 * 179.97438 * 6 4 3 8 8 O 1.21513 * 120.00228 * 354.00295 * 7 6 4 9 9 N 1.34784 * 119.99902 * 173.99727 * 7 6 4 10 10 C 1.46498 * 119.99957 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45742 * 35.00663 * 10 9 7 12 12 C 1.53032 * 109.46125 * 275.03066 * 10 9 7 13 13 C 1.53186 * 109.31433 * 301.35789 * 12 10 9 14 14 N 1.46931 * 108.77614 * 305.36395 * 13 12 10 15 15 C 1.36935 * 120.63361 * 233.62762 * 14 13 12 16 16 H 1.08004 * 119.99747 * 157.13877 * 15 14 13 17 17 C 1.38809 * 120.00097 * 337.14718 * 15 14 13 18 18 N 1.31613 * 120.00231 * 155.43749 * 17 15 14 19 19 Si 1.86801 * 119.99849 * 335.43071 * 17 15 14 20 20 H 1.48495 * 109.47234 * 95.53814 * 19 17 15 21 21 H 1.48497 * 109.47216 * 215.53878 * 19 17 15 22 22 H 1.48503 * 109.47263 * 335.53985 * 19 17 15 23 23 C 1.46930 * 118.73284 * 53.60948 * 14 13 12 24 24 C 1.53035 * 109.45821 * 154.97221 * 10 9 7 25 25 H 1.08996 * 109.49984 * 178.59395 * 24 10 9 26 26 C 1.53003 * 109.50155 * 298.69305 * 24 10 9 27 27 N 1.33004 * 119.80648 * 0.27044 * 6 4 3 28 28 C 1.31798 * 119.92508 * 359.45564 * 27 6 4 29 29 C 1.50699 * 119.93736 * 180.25318 * 28 27 6 30 30 H 1.09001 * 109.47085 * 89.99964 * 1 2 3 31 31 H 1.08999 * 109.46902 * 209.99959 * 1 2 3 32 32 H 1.09002 * 109.47281 * 329.99758 * 1 2 3 33 33 H 1.09003 * 109.47211 * 263.69724 * 5 4 3 34 34 H 1.09002 * 109.47521 * 23.69427 * 5 4 3 35 35 H 1.08999 * 109.47285 * 143.69206 * 5 4 3 36 36 H 0.97003 * 119.99573 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.50074 * 61.30948 * 12 10 9 38 38 H 1.09004 * 109.49895 * 181.40753 * 12 10 9 39 39 H 1.09003 * 109.58860 * 65.15013 * 13 12 10 40 40 H 1.08997 * 109.59148 * 185.58162 * 13 12 10 41 41 H 0.96998 * 120.00158 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.59026 * 66.18106 * 23 14 13 43 43 H 1.09005 * 109.58553 * 186.60508 * 23 14 13 44 44 H 1.09004 * 109.46916 * 60.00065 * 26 24 10 45 45 H 1.08993 * 109.47164 * 180.02562 * 26 24 10 46 46 H 1.09001 * 109.46963 * 300.00160 * 26 24 10 47 47 H 1.08996 * 109.46941 * 270.29231 * 29 28 27 48 48 H 1.09004 * 109.46953 * 30.29422 * 29 28 27 49 49 H 1.08997 * 109.47294 * 150.29689 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 -0.0001 6 6 4.1846 -0.0576 0.0005 7 6 5.6661 -0.0590 0.0005 8 8 6.2747 0.9870 -0.1094 9 7 6.3390 -1.2205 0.1226 10 6 7.8039 -1.2219 0.1220 11 1 8.1681 -0.3232 0.6200 12 6 8.3132 -1.2472 -1.3209 13 6 7.7712 -2.4935 -2.0277 14 7 8.1331 -3.6793 -1.2392 15 6 8.7960 -4.7276 -1.8197 16 1 9.3750 -5.4048 -1.2093 17 6 8.7239 -4.9196 -3.1925 18 7 9.6824 -5.5702 -3.8173 19 14 7.2664 -4.2547 -4.1533 20 1 7.6138 -2.9292 -4.7255 21 1 6.9274 -5.1946 -5.2519 22 1 6.0992 -4.1118 -3.2464 23 6 7.7705 -3.7188 0.1841 24 6 8.3128 -2.4587 0.8659 25 1 9.4025 -2.4735 0.8444 26 6 7.8307 -2.4160 2.3174 27 7 3.5166 -1.2077 -0.0055 28 6 2.1986 -1.2026 -0.0005 29 6 1.4415 -2.5056 -0.0015 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 4.5169 2.7140 -1.0216 34 1 3.6027 3.2402 0.4121 35 1 5.1364 2.3586 0.6088 36 1 5.8531 -2.0555 0.2100 37 1 7.9700 -0.3544 -1.8436 38 1 9.4029 -1.2735 -1.3217 39 1 6.6863 -2.4253 -2.1080 40 1 8.2094 -2.5689 -3.0228 41 1 9.6318 -5.7047 -4.7765 42 1 6.6856 -3.7505 0.2841 43 1 8.2083 -4.6026 0.6484 44 1 6.7409 -2.4028 2.3380 45 1 8.1937 -3.2968 2.8468 46 1 8.2142 -1.5178 2.8014 47 1 1.2596 -2.8193 -1.0293 48 1 2.0281 -3.2671 0.5125 49 1 0.4891 -2.3728 0.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942404893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:10 Heat of formation + Delta-G solvation = 32.373401 kcal Electronic energy + Delta-G solvation = -30002.501181 eV Core-core repulsion = 26158.314498 eV Total energy + Delta-G solvation = -3844.186683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69087 -39.88638 -37.95684 -35.32848 -34.54599 -34.40042 -32.62540 -31.55915 -30.55551 -30.25972 -29.08501 -26.67341 -26.22501 -25.14858 -23.84732 -22.62909 -21.86688 -21.55653 -20.81629 -18.92323 -18.51910 -17.55815 -16.68406 -16.11247 -15.71217 -15.41762 -15.12217 -14.90095 -14.53845 -14.30483 -13.81840 -13.79822 -13.57039 -13.47212 -13.45295 -13.31410 -13.11732 -12.91426 -12.57908 -12.42361 -12.38392 -12.25650 -12.11319 -11.79456 -11.73469 -11.63260 -11.54307 -11.24349 -11.00888 -10.65150 -10.54144 -10.22462 -10.04955 -9.95911 -9.71103 -9.46576 -9.22660 -9.16684 -8.77904 -8.56000 -7.04167 -5.96436 -3.26620 0.20094 0.81097 2.65221 3.09858 3.33015 3.48755 3.51767 3.53195 3.70007 3.74130 4.11409 4.39391 4.52971 4.65422 4.81920 4.90498 4.94538 5.01782 5.07555 5.15199 5.22615 5.30727 5.32815 5.39535 5.43394 5.51798 5.59129 5.64281 5.67505 5.73544 5.84672 5.87365 5.94781 5.99315 6.02624 6.15058 6.21980 6.30265 6.36324 6.40231 6.57618 6.63783 6.68832 6.73760 6.92376 6.96946 7.41634 7.68906 7.90549 8.23500 8.29765 8.91906 9.71740 10.07616 11.19148 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.004023 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.320354 B = 6958.048651 C = 7775.467180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.104 3.896 3 N -0.444 5.444 4 C 0.137 3.863 5 C -0.104 4.104 6 C 0.026 3.974 7 C 0.573 3.427 8 O -0.530 6.530 9 N -0.691 5.691 10 C 0.157 3.843 11 H 0.082 0.918 12 C -0.147 4.147 13 C 0.129 3.871 14 N -0.604 5.604 15 C -0.259 4.259 16 H 0.088 0.912 17 C 0.024 3.976 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.291 1.291 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.154 3.846 24 C -0.119 4.119 25 H 0.089 0.911 26 C -0.142 4.142 27 N -0.404 5.404 28 C 0.070 3.930 29 C -0.104 4.104 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.410 0.590 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.262 0.738 42 H 0.020 0.980 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.625 11.153 11.462 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.038 4.038 3 N -0.160 5.160 4 C -0.003 4.003 5 C -0.162 4.162 6 C -0.116 4.116 7 C 0.357 3.643 8 O -0.407 6.407 9 N -0.343 5.343 10 C 0.054 3.946 11 H 0.100 0.900 12 C -0.187 4.187 13 C 0.004 3.996 14 N -0.327 5.327 15 C -0.387 4.387 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.547 5.547 19 Si 0.706 3.294 20 H -0.219 1.219 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.028 3.972 24 C -0.140 4.140 25 H 0.107 0.893 26 C -0.200 4.200 27 N -0.121 5.121 28 C -0.074 4.074 29 C -0.161 4.161 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.248 0.752 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.030 11.779 11.227 22.842 hybrid contribution -1.071 -0.141 -0.847 1.372 sum -17.101 11.639 10.380 23.144 Atomic orbital electron populations 1.20837 0.87433 1.04228 1.03834 1.22406 0.98552 0.88938 0.93919 1.68298 1.07872 1.28806 1.11015 1.22344 0.89719 0.96685 0.91589 1.21048 0.99995 0.90472 1.04656 1.22044 0.95988 0.90112 1.03422 1.17563 0.84789 0.84518 0.77435 1.90716 1.68428 1.31009 1.50593 1.46046 1.07931 1.09162 1.71112 1.21011 0.77996 0.98798 0.96829 0.89950 1.22400 1.01675 0.99263 0.95325 1.21251 0.96779 0.85987 0.95614 1.44374 1.67455 1.15656 1.05237 1.18918 1.22494 1.05788 0.91530 0.89454 1.25129 0.97821 0.98122 0.96380 1.69880 1.30892 1.44962 1.08945 0.87067 0.85853 0.76862 0.79614 1.21916 1.23214 1.19627 1.20932 0.96099 0.95178 0.85016 1.21947 1.01821 0.96142 0.94078 0.89295 1.21766 1.00936 1.01405 0.95915 1.68186 1.08627 1.28638 1.06698 1.22124 0.90043 0.96963 0.98266 1.20792 0.99207 0.92232 1.03882 0.89522 0.89564 0.89954 0.89533 0.91168 0.87358 0.75201 0.92156 0.90480 0.95827 0.91047 0.92809 0.96268 0.91451 0.93081 0.92430 0.93070 0.89700 0.89778 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.78 36.01 0.35 -0.33 16 2 C 0.10 1.13 6.79 -82.28 -0.56 0.58 16 3 N -0.44 -5.72 10.34 -5.24 -0.05 -5.77 16 4 C 0.14 1.88 6.82 -82.04 -0.56 1.32 16 5 C -0.10 -1.25 8.89 36.01 0.32 -0.93 16 6 C 0.03 0.38 6.75 -82.84 -0.56 -0.18 16 7 C 0.57 9.14 7.71 -12.18 -0.09 9.04 16 8 O -0.53 -8.96 12.99 5.35 0.07 -8.89 16 9 N -0.69 -10.91 3.59 -54.62 -0.20 -11.11 16 10 C 0.16 2.54 2.21 -67.90 -0.15 2.39 16 11 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 12 C -0.15 -2.73 5.77 -26.62 -0.15 -2.88 16 13 C 0.13 2.87 3.97 -3.71 -0.01 2.86 16 14 N -0.60 -14.01 2.82 -172.32 -0.49 -14.50 16 15 C -0.26 -7.14 10.05 -15.06 -0.15 -7.29 16 16 H 0.09 2.54 8.03 -52.48 -0.42 2.12 16 17 C 0.02 0.70 5.20 -17.43 -0.09 0.61 16 18 N -0.90 -27.66 13.97 55.49 0.78 -26.89 16 19 Si 0.88 22.68 24.38 -169.99 -4.14 18.54 16 20 H -0.29 -7.44 6.65 56.52 0.38 -7.06 16 21 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 22 H -0.27 -6.93 6.62 56.52 0.37 -6.56 16 23 C 0.15 2.87 5.50 -3.71 -0.02 2.85 16 24 C -0.12 -1.85 2.67 -90.50 -0.24 -2.09 16 25 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 26 C -0.14 -1.79 9.05 37.16 0.34 -1.45 16 27 N -0.40 -5.77 9.65 -5.89 -0.06 -5.83 16 28 C 0.07 0.81 6.79 -82.43 -0.56 0.25 16 29 C -0.10 -0.82 9.78 36.01 0.35 -0.47 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.36 5.94 -51.93 -0.31 0.06 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.39 5.82 -51.93 -0.30 1.09 16 36 H 0.41 6.52 6.10 -40.82 -0.25 6.27 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.02 0.54 6.78 -51.93 -0.35 0.19 16 40 H 0.07 1.77 4.22 -51.93 -0.22 1.55 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.02 0.35 6.64 -51.93 -0.34 0.01 16 43 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 44 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.41 5.94 -51.93 -0.31 0.11 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -32.61 376.24 -7.76 -40.37 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.54 Total: 4.15 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.79 Total: 4.26 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.02 Total: -64.09 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.61 -7.76 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942404893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.740 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds