Wall clock time and date at job start Tue Mar 31 2020 16:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32135 * 119.90202 * 2 1 4 4 C 1.32078 * 120.07232 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.06319 * 179.97438 * 4 3 2 6 6 C 1.39434 * 119.87324 * 0.02562 * 4 3 2 7 7 C 1.48154 * 120.09621 * 179.97438 * 6 4 3 8 8 O 1.21513 * 120.00228 * 354.00295 * 7 6 4 9 9 N 1.34784 * 119.99902 * 173.99727 * 7 6 4 10 10 C 1.46498 * 119.99957 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45742 * 35.00663 * 10 9 7 12 12 C 1.53032 * 109.46125 * 275.03066 * 10 9 7 13 13 C 1.53186 * 109.31433 * 301.35789 * 12 10 9 14 14 N 1.46931 * 108.77614 * 305.36395 * 13 12 10 15 15 C 1.36935 * 120.63361 * 233.62762 * 14 13 12 16 16 H 1.08004 * 119.99747 * 157.13877 * 15 14 13 17 17 C 1.38809 * 120.00097 * 337.14718 * 15 14 13 18 18 N 1.31613 * 120.00231 * 155.43749 * 17 15 14 19 19 Si 1.86801 * 119.99849 * 335.43071 * 17 15 14 20 20 H 1.48495 * 109.47234 * 95.53814 * 19 17 15 21 21 H 1.48497 * 109.47216 * 215.53878 * 19 17 15 22 22 H 1.48503 * 109.47263 * 335.53985 * 19 17 15 23 23 C 1.46930 * 118.73284 * 53.60948 * 14 13 12 24 24 C 1.53035 * 109.45821 * 154.97221 * 10 9 7 25 25 H 1.08996 * 109.49984 * 178.59395 * 24 10 9 26 26 C 1.53003 * 109.50155 * 298.69305 * 24 10 9 27 27 N 1.33004 * 119.80648 * 0.27044 * 6 4 3 28 28 C 1.31798 * 119.92508 * 359.45564 * 27 6 4 29 29 C 1.50699 * 119.93736 * 180.25318 * 28 27 6 30 30 H 1.09001 * 109.47085 * 89.99964 * 1 2 3 31 31 H 1.08999 * 109.46902 * 209.99959 * 1 2 3 32 32 H 1.09002 * 109.47281 * 329.99758 * 1 2 3 33 33 H 1.09003 * 109.47211 * 263.69724 * 5 4 3 34 34 H 1.09002 * 109.47521 * 23.69427 * 5 4 3 35 35 H 1.08999 * 109.47285 * 143.69206 * 5 4 3 36 36 H 0.97003 * 119.99573 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.50074 * 61.30948 * 12 10 9 38 38 H 1.09004 * 109.49895 * 181.40753 * 12 10 9 39 39 H 1.09003 * 109.58860 * 65.15013 * 13 12 10 40 40 H 1.08997 * 109.59148 * 185.58162 * 13 12 10 41 41 H 0.96998 * 120.00158 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.59026 * 66.18106 * 23 14 13 43 43 H 1.09005 * 109.58553 * 186.60508 * 23 14 13 44 44 H 1.09004 * 109.46916 * 60.00065 * 26 24 10 45 45 H 1.08993 * 109.47164 * 180.02562 * 26 24 10 46 46 H 1.09001 * 109.46963 * 300.00160 * 26 24 10 47 47 H 1.08996 * 109.46941 * 270.29231 * 29 28 27 48 48 H 1.09004 * 109.46953 * 30.29422 * 29 28 27 49 49 H 1.08997 * 109.47294 * 150.29689 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 -0.0001 6 6 4.1846 -0.0576 0.0005 7 6 5.6661 -0.0590 0.0005 8 8 6.2747 0.9870 -0.1094 9 7 6.3390 -1.2205 0.1226 10 6 7.8039 -1.2219 0.1220 11 1 8.1681 -0.3232 0.6200 12 6 8.3132 -1.2472 -1.3209 13 6 7.7712 -2.4935 -2.0277 14 7 8.1331 -3.6793 -1.2392 15 6 8.7960 -4.7276 -1.8197 16 1 9.3750 -5.4048 -1.2093 17 6 8.7239 -4.9196 -3.1925 18 7 9.6824 -5.5702 -3.8173 19 14 7.2664 -4.2547 -4.1533 20 1 7.6138 -2.9292 -4.7255 21 1 6.9274 -5.1946 -5.2519 22 1 6.0992 -4.1118 -3.2464 23 6 7.7705 -3.7188 0.1841 24 6 8.3128 -2.4587 0.8659 25 1 9.4025 -2.4735 0.8444 26 6 7.8307 -2.4160 2.3174 27 7 3.5166 -1.2077 -0.0055 28 6 2.1986 -1.2026 -0.0005 29 6 1.4415 -2.5056 -0.0015 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 4.5169 2.7140 -1.0216 34 1 3.6027 3.2402 0.4121 35 1 5.1364 2.3586 0.6088 36 1 5.8531 -2.0555 0.2100 37 1 7.9700 -0.3544 -1.8436 38 1 9.4029 -1.2735 -1.3217 39 1 6.6863 -2.4253 -2.1080 40 1 8.2094 -2.5689 -3.0228 41 1 9.6318 -5.7047 -4.7765 42 1 6.6856 -3.7505 0.2841 43 1 8.2083 -4.6026 0.6484 44 1 6.7409 -2.4028 2.3380 45 1 8.1937 -3.2968 2.8468 46 1 8.2142 -1.5178 2.8014 47 1 1.2596 -2.8193 -1.0293 48 1 2.0281 -3.2671 0.5125 49 1 0.4891 -2.3728 0.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942404893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:08 Heat of formation + Delta-G solvation = 10.168359 kcal Electronic energy + Delta-G solvation = -30003.464064 eV Core-core repulsion = 26158.314498 eV Total energy + Delta-G solvation = -3845.149566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64667 -41.16167 -39.35923 -36.42237 -35.93857 -35.38798 -34.03620 -33.40298 -32.07284 -31.17305 -29.84926 -27.86615 -27.56636 -26.72493 -24.69791 -23.94178 -23.29398 -23.06833 -21.93545 -20.31956 -19.56025 -18.91988 -18.40048 -17.40984 -17.05172 -16.71162 -16.25389 -16.19977 -15.87974 -15.75135 -15.26752 -15.10934 -14.90459 -14.57239 -14.41555 -14.22655 -14.07114 -13.87557 -13.80874 -13.71847 -13.50925 -13.38761 -13.21799 -13.16397 -12.95184 -12.86164 -12.80790 -12.50595 -12.29561 -12.11931 -11.95860 -11.89717 -11.71329 -11.42829 -11.32100 -11.16757 -10.73055 -10.23949 -10.18129 -9.87493 -9.01327 -8.19308 -5.44150 -0.75506 -0.12157 1.24234 1.34893 1.42946 1.55379 1.94966 2.37541 2.53358 2.79704 2.88346 2.98446 3.21827 3.31346 3.53190 3.68823 3.79980 3.88597 3.97924 4.04938 4.14229 4.18972 4.37903 4.51485 4.51869 4.54508 4.63601 4.67079 4.70809 4.73216 4.76876 4.83284 4.85100 4.87208 4.90377 4.96115 4.99237 5.04940 5.10029 5.18282 5.23725 5.27061 5.41203 5.45888 5.54261 5.81706 6.03762 6.09921 6.34967 6.60617 6.87135 7.02025 7.60422 8.00234 9.00083 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.004023 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.320354 B = 6958.048651 C = 7775.467180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 N -0.458 5.458 4 C 0.126 3.874 5 C -0.098 4.098 6 C -0.002 4.002 7 C 0.573 3.427 8 O -0.545 6.545 9 N -0.691 5.691 10 C 0.165 3.835 11 H 0.094 0.906 12 C -0.139 4.139 13 C 0.131 3.869 14 N -0.615 5.615 15 C -0.242 4.242 16 H 0.064 0.936 17 C -0.030 4.030 18 N -0.950 5.950 19 Si 0.933 3.067 20 H -0.289 1.289 21 H -0.310 1.310 22 H -0.265 1.265 23 C 0.150 3.850 24 C -0.108 4.108 25 H 0.084 0.916 26 C -0.133 4.133 27 N -0.426 5.426 28 C 0.063 3.937 29 C -0.102 4.102 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.410 0.590 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.022 0.978 40 H 0.043 0.957 41 H 0.260 0.740 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.600 12.137 13.085 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.033 4.033 3 N -0.174 5.174 4 C -0.013 4.013 5 C -0.155 4.155 6 C -0.141 4.141 7 C 0.358 3.642 8 O -0.424 6.424 9 N -0.342 5.342 10 C 0.060 3.940 11 H 0.112 0.888 12 C -0.179 4.179 13 C 0.006 3.994 14 N -0.339 5.339 15 C -0.371 4.371 16 H 0.082 0.918 17 C -0.225 4.225 18 N -0.596 5.596 19 Si 0.763 3.237 20 H -0.217 1.217 21 H -0.239 1.239 22 H -0.190 1.190 23 C 0.026 3.974 24 C -0.128 4.128 25 H 0.102 0.898 26 C -0.191 4.191 27 N -0.144 5.144 28 C -0.082 4.082 29 C -0.160 4.160 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.247 0.753 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.013 12.807 12.892 26.301 hybrid contribution -0.251 -0.461 -1.274 1.378 sum -19.264 12.346 11.617 25.661 Atomic orbital electron populations 1.21039 0.84025 1.05909 1.05187 1.23178 1.00626 0.88140 0.91343 1.68392 1.07382 1.29852 1.11779 1.22513 0.90353 0.96771 0.91624 1.20973 0.99761 0.90493 1.04286 1.21859 0.95326 0.90936 1.05999 1.17779 0.85499 0.84162 0.76765 1.90702 1.69040 1.31399 1.51221 1.45979 1.07540 1.09235 1.71416 1.20914 0.78438 0.99562 0.95043 0.88789 1.22295 1.01440 0.97304 0.96883 1.21161 0.96428 0.87134 0.94660 1.44482 1.67413 1.14930 1.07058 1.18935 1.21147 1.05749 0.91272 0.91810 1.25637 0.99745 0.99558 0.97524 1.69982 1.32671 1.47884 1.09109 0.86127 0.83181 0.76074 0.78271 1.21725 1.23855 1.18970 1.21142 0.96952 0.96895 0.82458 1.21807 1.01400 0.93929 0.95677 0.89760 1.21689 1.01117 1.02733 0.93549 1.68159 1.10130 1.28576 1.07492 1.22805 0.89410 0.98828 0.97112 1.20953 1.00156 0.90125 1.04723 0.88013 0.86710 0.89462 0.89879 0.89601 0.88370 0.75252 0.91980 0.90726 0.95996 0.93859 0.93041 0.94939 0.91614 0.92766 0.91235 0.91653 0.88983 0.90346 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.78 71.24 0.70 -0.24 16 2 C 0.11 2.11 6.79 42.63 0.29 2.40 16 3 N -0.46 -10.99 10.34 -170.49 -1.76 -12.75 16 4 C 0.13 3.36 6.82 42.81 0.29 3.65 16 5 C -0.10 -2.29 8.89 71.24 0.63 -1.66 16 6 C 0.00 -0.05 6.75 41.89 0.28 0.23 16 7 C 0.57 17.86 7.71 86.88 0.67 18.53 16 8 O -0.54 -18.15 12.99 -3.75 -0.05 -18.20 16 9 N -0.69 -20.98 3.59 -445.00 -1.60 -22.57 16 10 C 0.16 5.07 2.21 45.01 0.10 5.17 16 11 H 0.09 2.76 7.58 -2.38 -0.02 2.74 16 12 C -0.14 -5.11 5.77 30.67 0.18 -4.93 16 13 C 0.13 5.81 3.97 86.36 0.34 6.15 16 14 N -0.61 -28.42 2.82 -699.08 -1.97 -30.39 16 15 C -0.24 -13.51 10.05 84.03 0.84 -12.67 16 16 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 17 C -0.03 -1.74 5.20 84.86 0.44 -1.30 16 18 N -0.95 -59.83 13.97 21.65 0.30 -59.53 16 19 Si 0.93 47.93 24.38 68.60 1.67 49.61 16 20 H -0.29 -14.61 6.65 99.48 0.66 -13.95 16 21 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 22 H -0.27 -13.15 6.62 99.48 0.66 -12.49 16 23 C 0.15 5.42 5.50 86.36 0.48 5.90 16 24 C -0.11 -3.15 2.67 -10.72 -0.03 -3.18 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16 26 C -0.13 -2.98 9.05 71.98 0.65 -2.33 16 27 N -0.43 -11.62 9.65 -172.53 -1.67 -13.28 16 28 C 0.06 1.32 6.79 42.68 0.29 1.61 16 29 C -0.10 -1.28 9.78 71.24 0.70 -0.59 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.38 5.94 -2.39 -0.01 0.36 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 2.50 5.82 -2.39 -0.01 2.48 16 36 H 0.41 12.49 6.10 -92.71 -0.57 11.93 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.02 0.99 6.78 -2.39 -0.02 0.97 16 40 H 0.04 2.16 4.22 -2.39 -0.01 2.15 16 41 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.03 1.12 6.64 -2.39 -0.02 1.10 16 43 H 0.07 2.38 7.91 -2.38 -0.02 2.37 16 44 H 0.05 1.20 7.54 -2.38 -0.02 1.18 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.12 0.61 5.94 -2.39 -0.01 0.59 16 Total: -1.00 -72.28 376.24 2.10 -70.18 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.31 Total: 20.19 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.85 Total: 16.75 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -6.69 Total: -138.53 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.05 Total: -18.20 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.67 Total: 49.61 kcal Total: -72.28 2.10 -70.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942404893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.346 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds