Wall clock time and date at job start Tue Mar 31 2020 17:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34665 * 126.58675 * 2 1 4 4 N 1.34129 * 108.01831 * 179.97438 * 3 2 1 5 5 C 1.30495 * 109.25803 * 359.72187 * 4 3 2 6 6 N 1.35043 * 108.69710 * 0.44625 * 5 4 3 7 7 C 1.46500 * 126.39935 * 179.82583 * 6 5 4 8 8 C 1.50699 * 109.47234 * 264.68748 * 7 6 5 9 9 O 1.21276 * 119.99768 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00370 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00184 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.02355 * 33.93668 * 11 10 8 13 13 C 1.52528 * 109.03192 * 274.99782 * 11 10 8 14 14 C 1.53847 * 111.65574 * 293.47467 * 13 11 10 15 15 C 1.51438 * 107.03868 * 302.79899 * 14 13 11 16 16 H 1.08997 * 109.87088 * 305.81661 * 15 14 13 17 17 C 1.52335 * 117.45351 * 178.78421 * 15 14 13 18 18 N 1.48240 * 105.86453 * 214.67567 * 17 15 14 19 19 C 1.36934 * 125.78414 * 183.44868 * 18 17 15 20 20 H 1.08003 * 120.00318 * 179.69124 * 19 18 17 21 21 C 1.38811 * 120.00118 * 359.68888 * 19 18 17 22 22 N 1.31625 * 119.99566 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47043 * 60.00036 * 23 21 19 25 25 H 1.48498 * 109.46976 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46878 * 300.00141 * 23 21 19 27 27 C 1.48666 * 108.43057 * 3.18104 * 18 17 15 28 28 C 1.53055 * 103.44313 * 24.38105 * 27 18 17 29 29 H 1.08999 * 110.55801 * 75.66743 * 28 27 18 30 30 C 1.51618 * 116.67274 * 203.03990 * 28 27 18 31 31 H 1.09003 * 109.47249 * 270.04279 * 1 2 3 32 32 H 1.08994 * 109.47162 * 30.04386 * 1 2 3 33 33 H 1.09006 * 109.46688 * 150.04717 * 1 2 3 34 34 H 1.08000 * 125.99437 * 359.96221 * 3 2 1 35 35 H 1.08004 * 125.65333 * 180.29291 * 5 4 3 36 36 H 1.08998 * 109.47641 * 144.68352 * 7 6 5 37 37 H 1.09003 * 109.47198 * 24.68880 * 7 6 5 38 38 H 0.97003 * 119.99904 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.04216 * 172.91602 * 13 11 10 40 40 H 1.08996 * 109.04479 * 54.03566 * 13 11 10 41 41 H 1.09002 * 109.93550 * 183.41763 * 14 13 11 42 42 H 1.08995 * 110.00730 * 62.22292 * 14 13 11 43 43 H 1.08992 * 110.17151 * 95.57294 * 17 15 14 44 44 H 1.09002 * 110.16408 * 333.77219 * 17 15 14 45 45 H 0.97001 * 119.99419 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.62339 * 142.86896 * 27 18 17 47 47 H 1.08997 * 110.62724 * 265.72902 * 27 18 17 48 48 H 1.09000 * 109.94610 * 295.63028 * 30 28 27 49 49 H 1.08997 * 109.94173 * 56.87003 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5969 -0.6507 0.0069 6 7 2.3230 -1.0990 0.0006 7 6 1.8944 -2.4999 0.0009 8 6 1.6296 -2.9444 -1.4144 9 8 1.7832 -2.1675 -2.3328 10 7 1.2220 -4.2055 -1.6596 11 6 0.9651 -4.6378 -3.0356 12 1 1.6629 -4.1321 -3.7031 13 6 -0.4596 -4.2520 -3.4204 14 6 -1.5005 -5.0367 -2.6033 15 6 -1.2307 -6.5083 -2.8372 16 1 -1.2246 -6.7184 -3.9068 17 6 -2.1180 -7.5096 -2.1086 18 7 -1.2459 -8.6640 -1.7858 19 6 -1.6476 -9.8282 -1.1871 20 1 -0.9309 -10.6141 -0.9992 21 6 -2.9758 -9.9983 -0.8215 22 7 -3.8493 -9.0407 -1.0509 23 14 -3.5237 -11.5861 -0.0041 24 1 -2.7756 -11.7732 1.2650 25 1 -4.9786 -11.5175 0.2851 26 1 -3.2522 -12.7294 -0.9119 27 6 0.1374 -8.3463 -2.2282 28 6 0.1681 -6.8161 -2.2290 29 1 0.2377 -6.4342 -1.2105 30 6 1.2064 -6.1566 -3.1155 31 1 -0.3634 0.0008 1.0277 32 1 -0.3633 0.8895 -0.5145 33 1 -0.3633 -0.8905 -0.5131 34 1 1.9864 2.1118 -0.0006 35 1 4.4820 -1.2696 0.0134 36 1 0.9830 -2.6009 0.5901 37 1 2.6786 -3.1197 0.4357 38 1 1.0995 -4.8271 -0.9251 39 1 -0.6100 -4.4585 -4.4800 40 1 -0.5993 -3.1856 -3.2438 41 1 -2.5055 -4.7846 -2.9418 42 1 -1.3959 -4.8034 -1.5438 43 1 -2.9367 -7.8260 -2.7546 44 1 -2.5102 -7.0672 -1.1929 45 1 -4.7774 -9.1594 -0.7951 46 1 0.8670 -8.7447 -1.5232 47 1 0.3196 -8.7370 -3.2293 48 1 2.2077 -6.4057 -2.7641 49 1 1.0799 -6.4882 -4.1461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980138709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:03 Heat of formation + Delta-G solvation = 50.245020 kcal Electronic energy + Delta-G solvation = -29210.728333 eV Core-core repulsion = 25367.316622 eV Total energy + Delta-G solvation = -3843.411711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31620 -40.46508 -38.84579 -35.81341 -34.23333 -33.37983 -32.13570 -31.92622 -30.88279 -29.16521 -27.84440 -26.58623 -26.28284 -25.11145 -22.12254 -22.00711 -21.56023 -20.77388 -20.03531 -19.85485 -19.08795 -17.82968 -17.35763 -16.79675 -15.86875 -15.77516 -15.31151 -14.97621 -14.70170 -14.41590 -14.21052 -13.93034 -13.81041 -13.66436 -13.31127 -13.23182 -12.97032 -12.88023 -12.70906 -12.56922 -12.29341 -12.28474 -12.06035 -11.52983 -11.27115 -11.13289 -10.92233 -10.83104 -10.75206 -10.52072 -10.11048 -10.09478 -9.99994 -9.93166 -9.61819 -9.58654 -9.49136 -9.11993 -8.65891 -8.42291 -6.88777 -5.75291 -3.08570 1.77684 2.26456 2.38479 3.00970 3.11309 3.36347 3.41002 3.42135 4.28134 4.32261 4.44073 4.52003 4.56449 4.60851 4.72093 4.77255 4.92319 4.95612 5.20170 5.24170 5.25848 5.31685 5.46083 5.53710 5.55603 5.59558 5.62042 5.65634 5.71409 5.85550 6.02107 6.03546 6.13035 6.16826 6.18480 6.25019 6.34587 6.46676 6.51740 6.55155 6.60263 6.73432 6.90435 6.95329 7.24790 7.49452 7.57900 7.77336 7.90603 7.93599 8.17975 9.15642 9.76282 10.43708 11.36490 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002510 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.089995 B =11151.676666 C =11478.974001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.011 4.011 3 C -0.032 4.032 4 N -0.492 5.492 5 C 0.187 3.813 6 N -0.441 5.441 7 C 0.082 3.918 8 C 0.495 3.505 9 O -0.524 6.524 10 N -0.715 5.715 11 C 0.152 3.848 12 H 0.083 0.917 13 C -0.125 4.125 14 C -0.098 4.098 15 C -0.115 4.115 16 H 0.063 0.937 17 C 0.189 3.811 18 N -0.609 5.609 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.141 3.859 28 C -0.107 4.107 29 H 0.069 0.931 30 C -0.111 4.111 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.167 0.833 35 H 0.202 0.798 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.020 0.980 48 H 0.069 0.931 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.167 13.946 0.940 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C -0.179 4.179 4 N -0.210 5.210 5 C -0.095 4.095 6 N -0.125 5.125 7 C -0.045 4.045 8 C 0.278 3.722 9 O -0.400 6.400 10 N -0.369 5.369 11 C 0.049 3.951 12 H 0.101 0.899 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.135 4.135 16 H 0.082 0.918 17 C 0.065 3.935 18 N -0.336 5.336 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.016 3.984 28 C -0.127 4.127 29 H 0.087 0.913 30 C -0.150 4.150 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.219 0.781 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.240 0.760 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.038 0.962 48 H 0.087 0.913 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.723 14.787 0.344 18.269 hybrid contribution -1.134 -1.848 0.737 2.290 sum 9.589 12.938 1.081 16.140 Atomic orbital electron populations 1.20224 0.87306 1.03629 1.02461 1.21228 0.94545 0.86670 1.10092 1.21990 0.88400 0.98337 1.09165 1.70245 1.22468 1.08763 1.19476 1.24851 0.86907 0.91853 1.05883 1.44850 1.07444 1.05282 1.54909 1.21707 1.04782 0.81531 0.96502 1.20656 0.77794 0.82808 0.90917 1.90783 1.51085 1.52642 1.45457 1.46248 1.67944 1.12162 1.10557 1.21162 0.96887 0.95020 0.82073 0.89890 1.21907 0.93925 0.99991 1.00550 1.21218 0.98030 0.94731 0.99568 1.22151 0.96540 0.94723 1.00044 0.91809 1.20796 0.90922 0.84860 0.96947 1.45085 1.02254 1.15733 1.70547 1.19011 0.93165 0.92125 1.31292 0.90598 1.24784 0.96020 0.98135 1.01571 1.69949 1.02560 1.32028 1.52466 0.86218 0.77532 0.82862 0.79256 1.21238 1.21613 1.21204 1.21297 0.88721 0.91414 0.96987 1.22032 0.95264 0.97252 0.98145 0.91308 1.21675 0.99328 0.92562 1.01404 0.90907 0.89902 0.91808 0.81538 0.78117 0.86128 0.85709 0.76025 0.91230 0.92019 0.91896 0.92254 0.93243 0.94432 0.93754 0.94392 0.96180 0.91265 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.08 36.01 0.36 -0.29 16 2 C -0.01 -0.12 6.95 -81.60 -0.57 -0.69 16 3 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 4 N -0.49 -6.57 11.25 -14.67 -0.17 -6.74 16 5 C 0.19 2.05 12.56 -90.38 -1.13 0.91 16 6 N -0.44 -4.51 2.24 -115.28 -0.26 -4.77 16 7 C 0.08 0.60 6.28 -5.19 -0.03 0.57 16 8 C 0.49 5.13 7.84 -10.99 -0.09 5.05 16 9 O -0.52 -7.73 16.06 5.56 0.09 -7.65 16 10 N -0.72 -6.80 4.64 -53.54 -0.25 -7.05 16 11 C 0.15 1.67 2.71 -67.65 -0.18 1.49 16 12 H 0.08 0.99 7.52 -51.93 -0.39 0.60 16 13 C -0.13 -1.49 5.44 -26.53 -0.14 -1.64 16 14 C -0.10 -1.34 5.57 -27.08 -0.15 -1.49 16 15 C -0.12 -1.90 2.32 -90.36 -0.21 -2.11 16 16 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16 17 C 0.19 4.28 5.07 -3.42 -0.02 4.26 16 18 N -0.61 -14.72 3.45 -170.41 -0.59 -15.30 16 19 C -0.23 -6.13 10.30 -15.06 -0.16 -6.28 16 20 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.34 10.36 55.49 0.58 -25.76 16 23 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.14 2.65 6.90 -2.82 -0.02 2.63 16 28 C -0.11 -1.56 2.33 -89.90 -0.21 -1.77 16 29 H 0.07 0.98 6.30 -51.93 -0.33 0.65 16 30 C -0.11 -1.25 5.41 -26.91 -0.15 -1.40 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.57 7.95 -51.93 -0.41 0.15 16 34 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.20 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.12 0.67 8.02 -51.93 -0.42 0.26 16 37 H 0.12 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.40 3.30 6.82 -40.82 -0.28 3.02 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 43 H 0.05 1.28 7.30 -51.93 -0.38 0.90 16 44 H 0.04 0.94 7.60 -51.93 -0.39 0.54 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.89 8.04 -51.93 -0.42 0.48 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -34.59 386.86 -10.83 -45.42 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.04 Total: 1.16 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.00 Total: -1.69 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.68 Total: -59.62 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.59 -10.83 -45.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980138709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.664 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds