Wall clock time and date at job start Tue Mar 31 2020 17:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34665 * 126.58675 * 2 1 4 4 N 1.34129 * 108.01831 * 179.97438 * 3 2 1 5 5 C 1.30495 * 109.25803 * 359.72187 * 4 3 2 6 6 N 1.35043 * 108.69710 * 0.44625 * 5 4 3 7 7 C 1.46500 * 126.39935 * 179.82583 * 6 5 4 8 8 C 1.50699 * 109.47234 * 264.68748 * 7 6 5 9 9 O 1.21276 * 119.99768 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00370 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00184 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.02355 * 33.93668 * 11 10 8 13 13 C 1.52528 * 109.03192 * 274.99782 * 11 10 8 14 14 C 1.53847 * 111.65574 * 293.47467 * 13 11 10 15 15 C 1.51438 * 107.03868 * 302.79899 * 14 13 11 16 16 H 1.08997 * 109.87088 * 305.81661 * 15 14 13 17 17 C 1.52335 * 117.45351 * 178.78421 * 15 14 13 18 18 N 1.48240 * 105.86453 * 214.67567 * 17 15 14 19 19 C 1.36934 * 125.78414 * 183.44868 * 18 17 15 20 20 H 1.08003 * 120.00318 * 179.69124 * 19 18 17 21 21 C 1.38811 * 120.00118 * 359.68888 * 19 18 17 22 22 N 1.31625 * 119.99566 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47043 * 60.00036 * 23 21 19 25 25 H 1.48498 * 109.46976 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46878 * 300.00141 * 23 21 19 27 27 C 1.48666 * 108.43057 * 3.18104 * 18 17 15 28 28 C 1.53055 * 103.44313 * 24.38105 * 27 18 17 29 29 H 1.08999 * 110.55801 * 75.66743 * 28 27 18 30 30 C 1.51618 * 116.67274 * 203.03990 * 28 27 18 31 31 H 1.09003 * 109.47249 * 270.04279 * 1 2 3 32 32 H 1.08994 * 109.47162 * 30.04386 * 1 2 3 33 33 H 1.09006 * 109.46688 * 150.04717 * 1 2 3 34 34 H 1.08000 * 125.99437 * 359.96221 * 3 2 1 35 35 H 1.08004 * 125.65333 * 180.29291 * 5 4 3 36 36 H 1.08998 * 109.47641 * 144.68352 * 7 6 5 37 37 H 1.09003 * 109.47198 * 24.68880 * 7 6 5 38 38 H 0.97003 * 119.99904 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.04216 * 172.91602 * 13 11 10 40 40 H 1.08996 * 109.04479 * 54.03566 * 13 11 10 41 41 H 1.09002 * 109.93550 * 183.41763 * 14 13 11 42 42 H 1.08995 * 110.00730 * 62.22292 * 14 13 11 43 43 H 1.08992 * 110.17151 * 95.57294 * 17 15 14 44 44 H 1.09002 * 110.16408 * 333.77219 * 17 15 14 45 45 H 0.97001 * 119.99419 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.62339 * 142.86896 * 27 18 17 47 47 H 1.08997 * 110.62724 * 265.72902 * 27 18 17 48 48 H 1.09000 * 109.94610 * 295.63028 * 30 28 27 49 49 H 1.08997 * 109.94173 * 56.87003 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5812 0.6542 0.0006 5 6 3.5969 -0.6507 0.0069 6 7 2.3230 -1.0990 0.0006 7 6 1.8944 -2.4999 0.0009 8 6 1.6296 -2.9444 -1.4144 9 8 1.7832 -2.1675 -2.3328 10 7 1.2220 -4.2055 -1.6596 11 6 0.9651 -4.6378 -3.0356 12 1 1.6629 -4.1321 -3.7031 13 6 -0.4596 -4.2520 -3.4204 14 6 -1.5005 -5.0367 -2.6033 15 6 -1.2307 -6.5083 -2.8372 16 1 -1.2246 -6.7184 -3.9068 17 6 -2.1180 -7.5096 -2.1086 18 7 -1.2459 -8.6640 -1.7858 19 6 -1.6476 -9.8282 -1.1871 20 1 -0.9309 -10.6141 -0.9992 21 6 -2.9758 -9.9983 -0.8215 22 7 -3.8493 -9.0407 -1.0509 23 14 -3.5237 -11.5861 -0.0041 24 1 -2.7756 -11.7732 1.2650 25 1 -4.9786 -11.5175 0.2851 26 1 -3.2522 -12.7294 -0.9119 27 6 0.1374 -8.3463 -2.2282 28 6 0.1681 -6.8161 -2.2290 29 1 0.2377 -6.4342 -1.2105 30 6 1.2064 -6.1566 -3.1155 31 1 -0.3634 0.0008 1.0277 32 1 -0.3633 0.8895 -0.5145 33 1 -0.3633 -0.8905 -0.5131 34 1 1.9864 2.1118 -0.0006 35 1 4.4820 -1.2696 0.0134 36 1 0.9830 -2.6009 0.5901 37 1 2.6786 -3.1197 0.4357 38 1 1.0995 -4.8271 -0.9251 39 1 -0.6100 -4.4585 -4.4800 40 1 -0.5993 -3.1856 -3.2438 41 1 -2.5055 -4.7846 -2.9418 42 1 -1.3959 -4.8034 -1.5438 43 1 -2.9367 -7.8260 -2.7546 44 1 -2.5102 -7.0672 -1.1929 45 1 -4.7774 -9.1594 -0.7951 46 1 0.8670 -8.7447 -1.5232 47 1 0.3196 -8.7370 -3.2293 48 1 2.2077 -6.4057 -2.7641 49 1 1.0799 -6.4882 -4.1461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980138709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:02 Heat of formation + Delta-G solvation = 29.715707 kcal Electronic energy + Delta-G solvation = -29211.618551 eV Core-core repulsion = 25367.316622 eV Total energy + Delta-G solvation = -3844.301929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.07881 -41.48100 -39.97673 -37.15300 -35.00384 -34.75922 -33.48165 -32.82375 -32.07590 -30.65959 -28.76043 -27.64869 -27.30870 -26.78031 -23.56645 -22.87148 -22.34412 -21.93393 -21.43820 -20.77456 -20.18745 -18.75052 -18.61018 -18.09328 -16.94835 -16.65471 -16.57169 -16.15204 -15.75284 -15.67474 -15.42771 -15.06047 -14.81097 -14.57792 -14.54280 -14.39354 -13.93847 -13.69222 -13.66456 -13.61084 -13.41894 -13.25473 -13.16160 -12.97844 -12.78712 -12.65061 -12.47844 -12.40927 -11.99069 -11.91867 -11.74052 -11.40442 -11.37872 -10.98938 -10.92699 -10.80463 -10.66851 -10.40877 -10.05288 -9.21145 -8.86482 -7.82199 -5.16523 1.00995 1.46454 1.48878 1.50581 1.55133 1.70828 2.20814 2.34235 2.50768 3.35958 3.54151 3.62463 3.65596 3.75153 3.79678 3.83592 3.84991 3.91662 4.13229 4.16435 4.27503 4.36227 4.47381 4.48959 4.54191 4.59992 4.70839 4.73192 4.76217 4.86454 4.87532 4.94480 5.03079 5.03568 5.10920 5.13384 5.18604 5.27490 5.38394 5.43023 5.50038 5.53828 5.58359 5.77181 5.82998 5.84399 6.20460 6.22655 6.50669 7.11553 7.13010 7.16336 7.79131 8.45814 9.27915 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002510 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.089995 B =11151.676666 C =11478.974001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.060 4.060 4 N -0.532 5.532 5 C 0.181 3.819 6 N -0.443 5.443 7 C 0.081 3.919 8 C 0.499 3.501 9 O -0.570 6.570 10 N -0.707 5.707 11 C 0.158 3.842 12 H 0.082 0.918 13 C -0.116 4.116 14 C -0.089 4.089 15 C -0.106 4.106 16 H 0.064 0.936 17 C 0.199 3.801 18 N -0.633 5.633 19 C -0.238 4.238 20 H 0.082 0.918 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.974 3.026 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.280 1.280 27 C 0.134 3.866 28 C -0.087 4.087 29 H 0.078 0.922 30 C -0.098 4.098 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.176 0.824 35 H 0.231 0.769 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.413 0.587 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.003 0.997 44 H 0.005 0.995 45 H 0.244 0.756 46 H 0.047 0.953 47 H 0.024 0.976 48 H 0.093 0.907 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.937 13.651 1.545 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C -0.206 4.206 4 N -0.251 5.251 5 C -0.101 4.101 6 N -0.126 5.126 7 C -0.044 4.044 8 C 0.284 3.716 9 O -0.449 6.449 10 N -0.360 5.360 11 C 0.054 3.946 12 H 0.100 0.900 13 C -0.154 4.154 14 C -0.127 4.127 15 C -0.125 4.125 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.360 5.360 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.803 3.197 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.206 1.206 27 C 0.010 3.990 28 C -0.106 4.106 29 H 0.096 0.904 30 C -0.137 4.137 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.193 0.807 35 H 0.247 0.753 36 H 0.161 0.839 37 H 0.181 0.819 38 H 0.251 0.749 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.111 0.889 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.525 14.467 0.958 19.159 hybrid contribution -1.679 -1.807 0.517 2.520 sum 10.846 12.660 1.476 16.736 Atomic orbital electron populations 1.20273 0.85716 1.03652 1.03583 1.21618 0.95637 0.86782 1.09189 1.22318 0.88540 0.99441 1.10340 1.70196 1.23406 1.10399 1.21056 1.25452 0.88130 0.91663 1.04813 1.45009 1.07120 1.06212 1.54279 1.21997 1.07229 0.80444 0.94743 1.21095 0.76555 0.82283 0.91642 1.90776 1.53146 1.53826 1.47159 1.46150 1.67360 1.12255 1.10281 1.21006 0.95974 0.94667 0.82960 0.89984 1.21811 0.93883 0.99223 1.00500 1.21137 0.98522 0.92832 1.00194 1.21946 0.96438 0.94921 0.99203 0.91782 1.20505 0.90981 0.85949 0.95140 1.45442 1.04889 1.15347 1.70312 1.19426 0.93422 0.93311 1.30531 0.90055 1.25597 0.96349 1.01210 1.02971 1.70183 1.02283 1.33776 1.53851 0.85214 0.76508 0.79395 0.78604 1.20161 1.22364 1.20599 1.21529 0.86079 0.94397 0.96984 1.21905 0.94901 0.94418 0.99388 0.90403 1.21608 0.99148 0.92004 1.00902 0.89151 0.89338 0.92285 0.80687 0.75277 0.83928 0.81921 0.74902 0.90686 0.92391 0.92626 0.91917 0.97858 0.97649 0.94637 0.93437 0.95824 0.88899 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.08 71.24 0.72 -0.39 16 2 C -0.02 -0.36 6.95 40.95 0.28 -0.08 16 3 C -0.06 -1.43 11.79 83.52 0.98 -0.44 16 4 N -0.53 -13.98 11.25 -200.31 -2.25 -16.23 16 5 C 0.18 3.67 12.56 180.26 2.26 5.93 16 6 N -0.44 -8.07 2.24 -518.62 -1.16 -9.23 16 7 C 0.08 0.91 6.28 85.63 0.54 1.45 16 8 C 0.50 8.86 7.84 87.66 0.69 9.55 16 9 O -0.57 -15.72 16.06 -3.02 -0.05 -15.77 16 10 N -0.71 -10.97 4.64 -441.69 -2.05 -13.02 16 11 C 0.16 2.97 2.71 45.17 0.12 3.09 16 12 H 0.08 1.69 7.52 -2.38 -0.02 1.67 16 13 C -0.12 -2.50 5.44 30.72 0.17 -2.33 16 14 C -0.09 -2.33 5.57 30.37 0.17 -2.16 16 15 C -0.11 -3.41 2.32 -10.63 -0.02 -3.43 16 16 H 0.06 2.08 7.98 -2.39 -0.02 2.06 16 17 C 0.20 9.26 5.07 85.82 0.43 9.70 16 18 N -0.63 -30.73 3.45 -693.07 -2.39 -33.12 16 19 C -0.24 -12.88 10.30 84.03 0.87 -12.01 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 22 N -0.95 -56.27 10.36 21.65 0.22 -56.04 16 23 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 C 0.13 4.80 6.90 85.98 0.59 5.40 16 28 C -0.09 -2.31 2.33 -10.33 -0.02 -2.33 16 29 H 0.08 1.96 6.30 -2.39 -0.02 1.95 16 30 C -0.10 -1.84 5.41 30.48 0.16 -1.68 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 0.94 7.95 -2.38 -0.02 0.92 16 34 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.14 1.02 8.02 -2.39 -0.02 1.00 16 37 H 0.16 0.59 8.13 -2.39 -0.02 0.57 16 38 H 0.41 5.04 6.82 -92.71 -0.63 4.41 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.60 7.91 -2.39 -0.02 1.59 16 43 H 0.00 0.17 7.30 -2.39 -0.02 0.15 16 44 H 0.01 0.28 7.60 -2.39 -0.02 0.26 16 45 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -78.76 386.86 3.06 -75.69 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.31 Total: 13.99 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 8.41 Total: 6.91 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -7.63 Total: -127.64 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.05 Total: -15.77 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -78.76 3.06 -75.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980138709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.410 kcal (2) G-P(sol) polarization free energy of solvation -78.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds