Wall clock time and date at job start Tue Mar 31 2020 16:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32137 * 119.90357 * 2 1 4 4 C 1.32082 * 120.07119 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.06017 * 180.02562 * 4 3 2 6 6 C 1.39435 * 119.87407 * 0.02562 * 4 3 2 7 7 C 1.48155 * 120.09571 * 180.02562 * 6 4 3 8 8 O 1.21516 * 120.00090 * 354.21180 * 7 6 4 9 9 N 1.34777 * 119.99670 * 174.21668 * 7 6 4 10 10 C 1.46506 * 119.99871 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47105 * 34.99568 * 10 9 7 12 12 C 1.53001 * 109.46824 * 275.00071 * 10 9 7 13 13 C 1.53001 * 109.46987 * 180.02562 * 12 10 9 14 14 C 1.52990 * 109.47415 * 59.99361 * 13 12 10 15 15 C 1.53001 * 109.47564 * 300.00285 * 14 13 12 16 16 H 1.09005 * 109.46873 * 300.00168 * 15 14 13 17 17 N 1.46493 * 109.47202 * 179.97438 * 15 14 13 18 18 C 1.36941 * 119.99986 * 85.00177 * 17 15 14 19 19 H 1.08002 * 120.00164 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00291 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99786 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00263 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47439 * 90.00480 * 22 20 18 24 24 H 1.48501 * 109.47107 * 210.00124 * 22 20 18 25 25 H 1.48507 * 109.47223 * 330.00114 * 22 20 18 26 26 C 1.52994 * 109.47083 * 154.99965 * 10 9 7 27 27 N 1.33006 * 119.80877 * 0.27218 * 6 4 3 28 28 C 1.31803 * 119.92055 * 359.44837 * 27 6 4 29 29 C 1.50700 * 119.93394 * 180.27468 * 28 27 6 30 30 H 1.08994 * 109.46965 * 90.00011 * 1 2 3 31 31 H 1.09000 * 109.47037 * 210.00214 * 1 2 3 32 32 H 1.09002 * 109.47163 * 330.00005 * 1 2 3 33 33 H 1.09001 * 109.47222 * 263.26487 * 5 4 3 34 34 H 1.08997 * 109.47290 * 23.26864 * 5 4 3 35 35 H 1.09006 * 109.47200 * 143.26600 * 5 4 3 36 36 H 0.96996 * 120.00587 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46873 * 299.99598 * 12 10 9 38 38 H 1.08991 * 109.47479 * 59.99587 * 12 10 9 39 39 H 1.09005 * 109.47019 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.46730 * 299.99372 * 13 12 10 41 41 H 1.09003 * 109.47032 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47163 * 60.00276 * 14 13 12 43 43 H 0.97001 * 120.00239 * 264.99248 * 17 15 14 44 44 H 0.96992 * 119.99950 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.47474 * 59.99829 * 26 10 9 46 46 H 1.08999 * 109.46899 * 299.99356 * 26 10 9 47 47 H 1.09004 * 109.47024 * 270.28096 * 29 28 27 48 48 H 1.09000 * 109.47460 * 30.27895 * 29 28 27 49 49 H 1.08994 * 109.47421 * 150.27984 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4866 1.1493 0.0005 5 6 4.2376 2.4558 0.0011 6 6 4.1846 -0.0577 0.0005 7 6 5.6662 -0.0591 0.0017 8 8 6.2748 0.9873 -0.1035 9 7 6.3388 -1.2211 0.1193 10 6 7.8039 -1.2225 0.1210 11 1 8.1674 -0.3262 0.6235 12 6 8.3154 -1.2417 -1.3208 13 6 9.8454 -1.2438 -1.3191 14 6 10.3530 -2.4842 -0.5812 15 6 9.8414 -2.4649 0.8606 16 1 10.2053 -1.5688 1.3633 17 7 10.3269 -3.6530 1.5669 18 6 11.5678 -3.6459 2.1459 19 1 12.1888 -2.7646 2.0816 20 6 12.0277 -4.7715 2.8157 21 7 11.2712 -5.8457 2.8937 22 14 13.7207 -4.7620 3.6049 23 1 13.6116 -4.2790 5.0049 24 1 14.2776 -6.1387 3.5983 25 1 14.6190 -3.8610 2.8389 26 6 8.3118 -2.4627 0.8590 27 7 3.5166 -1.2078 -0.0055 28 6 2.1986 -1.2026 -0.0004 29 6 1.4414 -2.5056 -0.0009 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.5236 2.7110 -1.0193 34 1 3.6001 3.2412 0.4070 35 1 5.1325 2.3602 0.6161 36 1 5.8530 -2.0564 0.2035 37 1 7.9518 -2.1380 -1.8234 38 1 7.9535 -0.3582 -1.8466 39 1 10.2099 -1.2570 -2.3463 40 1 10.2094 -0.3476 -0.8164 41 1 11.4430 -2.4858 -0.5804 42 1 9.9890 -3.3803 -1.0839 43 1 9.7693 -4.4446 1.6245 44 1 11.5927 -6.6323 3.3614 45 1 7.9482 -3.3589 0.3564 46 1 7.9474 -2.4489 1.8861 47 1 1.2593 -2.8195 -1.0288 48 1 2.0281 -3.2670 0.5129 49 1 0.4892 -2.3727 0.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981212540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:20 Heat of formation + Delta-G solvation = 2.781461 kcal Electronic energy + Delta-G solvation = -28395.519019 eV Core-core repulsion = 24550.049133 eV Total energy + Delta-G solvation = -3845.469886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.80703 -39.82119 -37.99523 -35.50225 -34.68640 -34.59159 -33.29809 -31.12852 -30.53696 -29.81925 -28.91357 -27.78505 -26.41846 -24.02837 -23.72072 -22.78559 -21.86756 -21.35278 -20.41365 -19.52690 -18.59404 -17.68847 -16.92262 -16.22062 -16.01242 -15.54071 -15.16774 -14.83778 -14.41312 -14.27731 -13.91688 -13.79595 -13.71984 -13.54579 -13.47696 -13.28605 -13.12441 -13.02445 -12.69732 -12.57520 -12.48699 -12.23833 -12.11073 -12.05801 -11.87560 -11.13905 -10.98753 -10.93474 -10.87388 -10.71623 -10.35129 -10.32765 -10.19010 -10.13392 -9.80896 -9.64340 -9.32916 -9.29775 -8.93197 -8.85069 -6.95606 -5.76309 -3.04889 0.07575 0.68349 2.51141 2.91106 3.39759 3.44054 3.49423 3.50802 3.57079 3.60754 3.99073 4.26468 4.54008 4.58479 4.69292 4.83741 4.95323 4.98996 5.04961 5.08905 5.17119 5.29075 5.33124 5.42063 5.49142 5.50607 5.53348 5.60943 5.64410 5.69304 5.73624 5.86555 5.88330 5.97687 6.02543 6.13598 6.15389 6.31860 6.34079 6.52181 6.53827 6.62285 6.73486 6.82940 6.97376 7.13234 7.28215 7.51872 7.71367 8.06878 8.42471 9.53574 10.10988 10.45722 11.46467 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.002345 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.617598 B =11937.664116 C =12710.511062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.106 3.894 3 N -0.444 5.444 4 C 0.139 3.861 5 C -0.106 4.106 6 C 0.023 3.977 7 C 0.575 3.425 8 O -0.525 6.525 9 N -0.700 5.700 10 C 0.148 3.852 11 H 0.090 0.910 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.130 4.130 27 N -0.406 5.406 28 C 0.068 3.932 29 C -0.103 4.103 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.408 0.592 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.967 11.332 -8.818 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.036 4.036 3 N -0.160 5.160 4 C -0.001 4.001 5 C -0.163 4.163 6 C -0.118 4.118 7 C 0.359 3.641 8 O -0.402 6.402 9 N -0.350 5.350 10 C 0.043 3.957 11 H 0.108 0.892 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.074 3.926 16 H 0.067 0.933 17 N -0.365 5.365 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.168 4.168 27 N -0.123 5.123 28 C -0.075 4.075 29 C -0.161 4.161 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.244 0.756 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.269 12.108 -8.804 26.833 hybrid contribution 0.472 -0.885 0.420 1.087 sum -21.797 11.223 -8.384 25.910 Atomic orbital electron populations 1.20849 0.87373 1.04373 1.03840 1.22431 0.98612 0.88922 0.93640 1.68320 1.07868 1.28824 1.10940 1.22368 0.89721 0.96727 0.91308 1.21062 1.00069 0.90518 1.04653 1.22016 0.95884 0.90171 1.03720 1.17574 0.84791 0.84484 0.77289 1.90745 1.68421 1.30897 1.50096 1.46036 1.07894 1.09083 1.71956 1.21131 0.77351 1.00450 0.96723 0.89151 1.21884 0.96683 1.01707 0.95963 1.21482 0.94058 0.99503 1.00214 1.22294 1.01232 0.96180 0.98047 1.20082 0.89501 0.91843 0.91211 0.93324 1.42403 1.18021 1.12362 1.63672 1.19246 0.92677 0.98369 1.26452 0.91136 1.24741 0.98517 0.96266 1.01539 1.69660 1.36984 1.03742 1.47857 0.86201 0.84057 0.76677 0.79341 1.21757 1.21826 1.20752 1.22087 0.98417 0.96105 1.00233 1.68153 1.08635 1.28602 1.06894 1.22119 0.90028 0.96982 0.98395 1.20787 0.99349 0.92190 1.03738 0.89485 0.89507 0.89867 0.89488 0.91024 0.87315 0.75586 0.91993 0.92126 0.92475 0.92114 0.91855 0.92645 0.78321 0.93557 0.91599 0.91262 0.89775 0.89766 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.78 36.01 0.35 -0.19 16 2 C 0.11 0.98 6.79 -82.28 -0.56 0.42 16 3 N -0.44 -5.05 10.34 -5.24 -0.05 -5.10 16 4 C 0.14 1.68 6.82 -82.04 -0.56 1.12 16 5 C -0.11 -1.13 8.88 36.00 0.32 -0.81 16 6 C 0.02 0.30 6.75 -82.84 -0.56 -0.26 16 7 C 0.57 7.94 7.71 -12.19 -0.09 7.85 16 8 O -0.52 -8.04 13.00 5.35 0.07 -7.97 16 9 N -0.70 -9.18 5.07 -54.65 -0.28 -9.46 16 10 C 0.15 2.10 2.45 -67.93 -0.17 1.93 16 11 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 12 C -0.12 -1.69 5.50 -26.73 -0.15 -1.84 16 13 C -0.11 -1.63 5.92 -26.74 -0.16 -1.79 16 14 C -0.14 -2.41 5.50 -26.74 -0.15 -2.56 16 15 C 0.18 3.57 2.77 -67.96 -0.19 3.39 16 16 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 17 N -0.72 -17.86 5.12 -53.45 -0.27 -18.14 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C -0.13 -2.08 4.85 -26.76 -0.13 -2.21 16 27 N -0.41 -4.75 9.65 -5.88 -0.06 -4.81 16 28 C 0.07 0.64 6.79 -82.42 -0.56 0.09 16 29 C -0.10 -0.58 9.78 36.01 0.35 -0.23 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.25 5.94 -51.93 -0.31 -0.06 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 1.29 5.85 -51.93 -0.30 0.99 16 36 H 0.41 4.94 7.97 -40.82 -0.33 4.62 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.38 10.03 7.80 -40.82 -0.32 9.72 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.28 5.94 -51.93 -0.31 -0.03 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -32.17 392.12 -9.31 -41.49 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.84 Total: 10.33 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.49 Total: -2.27 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.06 Total: -64.88 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.17 -9.31 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981212540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.267 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds