Wall clock time and date at job start Tue Mar 31 2020 16:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32137 * 119.90357 * 2 1 4 4 C 1.32082 * 120.07119 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.06017 * 180.02562 * 4 3 2 6 6 C 1.39435 * 119.87407 * 0.02562 * 4 3 2 7 7 C 1.48155 * 120.09571 * 180.02562 * 6 4 3 8 8 O 1.21516 * 120.00090 * 354.21180 * 7 6 4 9 9 N 1.34777 * 119.99670 * 174.21668 * 7 6 4 10 10 C 1.46506 * 119.99871 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47105 * 34.99568 * 10 9 7 12 12 C 1.53001 * 109.46824 * 275.00071 * 10 9 7 13 13 C 1.53001 * 109.46987 * 180.02562 * 12 10 9 14 14 C 1.52990 * 109.47415 * 59.99361 * 13 12 10 15 15 C 1.53001 * 109.47564 * 300.00285 * 14 13 12 16 16 H 1.09005 * 109.46873 * 300.00168 * 15 14 13 17 17 N 1.46493 * 109.47202 * 179.97438 * 15 14 13 18 18 C 1.36941 * 119.99986 * 85.00177 * 17 15 14 19 19 H 1.08002 * 120.00164 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00291 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99786 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00263 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47439 * 90.00480 * 22 20 18 24 24 H 1.48501 * 109.47107 * 210.00124 * 22 20 18 25 25 H 1.48507 * 109.47223 * 330.00114 * 22 20 18 26 26 C 1.52994 * 109.47083 * 154.99965 * 10 9 7 27 27 N 1.33006 * 119.80877 * 0.27218 * 6 4 3 28 28 C 1.31803 * 119.92055 * 359.44837 * 27 6 4 29 29 C 1.50700 * 119.93394 * 180.27468 * 28 27 6 30 30 H 1.08994 * 109.46965 * 90.00011 * 1 2 3 31 31 H 1.09000 * 109.47037 * 210.00214 * 1 2 3 32 32 H 1.09002 * 109.47163 * 330.00005 * 1 2 3 33 33 H 1.09001 * 109.47222 * 263.26487 * 5 4 3 34 34 H 1.08997 * 109.47290 * 23.26864 * 5 4 3 35 35 H 1.09006 * 109.47200 * 143.26600 * 5 4 3 36 36 H 0.96996 * 120.00587 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46873 * 299.99598 * 12 10 9 38 38 H 1.08991 * 109.47479 * 59.99587 * 12 10 9 39 39 H 1.09005 * 109.47019 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.46730 * 299.99372 * 13 12 10 41 41 H 1.09003 * 109.47032 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47163 * 60.00276 * 14 13 12 43 43 H 0.97001 * 120.00239 * 264.99248 * 17 15 14 44 44 H 0.96992 * 119.99950 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.47474 * 59.99829 * 26 10 9 46 46 H 1.08999 * 109.46899 * 299.99356 * 26 10 9 47 47 H 1.09004 * 109.47024 * 270.28096 * 29 28 27 48 48 H 1.09000 * 109.47460 * 30.27895 * 29 28 27 49 49 H 1.08994 * 109.47421 * 150.27984 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4866 1.1493 0.0005 5 6 4.2376 2.4558 0.0011 6 6 4.1846 -0.0577 0.0005 7 6 5.6662 -0.0591 0.0017 8 8 6.2748 0.9873 -0.1035 9 7 6.3388 -1.2211 0.1193 10 6 7.8039 -1.2225 0.1210 11 1 8.1674 -0.3262 0.6235 12 6 8.3154 -1.2417 -1.3208 13 6 9.8454 -1.2438 -1.3191 14 6 10.3530 -2.4842 -0.5812 15 6 9.8414 -2.4649 0.8606 16 1 10.2053 -1.5688 1.3633 17 7 10.3269 -3.6530 1.5669 18 6 11.5678 -3.6459 2.1459 19 1 12.1888 -2.7646 2.0816 20 6 12.0277 -4.7715 2.8157 21 7 11.2712 -5.8457 2.8937 22 14 13.7207 -4.7620 3.6049 23 1 13.6116 -4.2790 5.0049 24 1 14.2776 -6.1387 3.5983 25 1 14.6190 -3.8610 2.8389 26 6 8.3118 -2.4627 0.8590 27 7 3.5166 -1.2078 -0.0055 28 6 2.1986 -1.2026 -0.0004 29 6 1.4414 -2.5056 -0.0009 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 4.5236 2.7110 -1.0193 34 1 3.6001 3.2412 0.4070 35 1 5.1325 2.3602 0.6161 36 1 5.8530 -2.0564 0.2035 37 1 7.9518 -2.1380 -1.8234 38 1 7.9535 -0.3582 -1.8466 39 1 10.2099 -1.2570 -2.3463 40 1 10.2094 -0.3476 -0.8164 41 1 11.4430 -2.4858 -0.5804 42 1 9.9890 -3.3803 -1.0839 43 1 9.7693 -4.4446 1.6245 44 1 11.5927 -6.6323 3.3614 45 1 7.9482 -3.3589 0.3564 46 1 7.9474 -2.4489 1.8861 47 1 1.2593 -2.8195 -1.0288 48 1 2.0281 -3.2670 0.5129 49 1 0.4892 -2.3727 0.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981212540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:19 Heat of formation + Delta-G solvation = -18.869754 kcal Electronic energy + Delta-G solvation = -28396.457886 eV Core-core repulsion = 24550.049133 eV Total energy + Delta-G solvation = -3846.408753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62280 -40.92603 -39.30928 -36.51133 -36.00146 -35.37909 -34.77197 -32.94064 -31.30119 -30.87120 -29.85343 -29.26535 -27.22951 -25.71251 -24.69549 -23.81984 -23.11606 -22.46271 -21.57425 -20.90328 -19.53746 -19.16929 -18.41036 -17.33703 -17.01196 -16.54175 -16.23786 -16.10499 -15.79287 -15.52102 -15.24216 -15.03564 -14.95294 -14.56503 -14.42972 -14.23093 -13.94904 -13.85258 -13.71419 -13.57747 -13.44150 -13.30764 -13.14331 -12.90209 -12.84892 -12.82352 -12.48745 -12.27508 -12.16508 -12.05561 -11.97665 -11.87927 -11.65725 -11.49773 -11.38910 -11.07350 -10.87259 -10.24104 -10.18905 -9.87638 -9.00063 -7.93687 -5.21670 -0.74958 -0.11100 1.47332 1.48494 1.55092 1.56834 1.87918 2.53994 2.56602 2.78592 2.89264 3.22445 3.39566 3.53224 3.61628 3.80054 3.84108 3.96192 4.03396 4.15464 4.25271 4.29666 4.41396 4.50814 4.54372 4.56251 4.65182 4.65393 4.68920 4.74824 4.75483 4.78652 4.87525 4.97280 4.99950 5.07112 5.08224 5.15694 5.21176 5.24473 5.34440 5.42669 5.47772 5.50295 5.53114 5.65169 6.03641 6.28782 6.34822 6.61248 7.01532 7.35035 8.10658 8.34282 9.29846 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.002345 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.617598 B =11937.664116 C =12710.511062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.110 3.890 3 N -0.460 5.460 4 C 0.125 3.875 5 C -0.099 4.099 6 C -0.001 4.001 7 C 0.574 3.426 8 O -0.545 6.545 9 N -0.696 5.696 10 C 0.158 3.842 11 H 0.079 0.921 12 C -0.116 4.116 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.178 3.822 16 H 0.040 0.960 17 N -0.736 5.736 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.969 3.031 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.270 1.270 26 C -0.115 4.115 27 N -0.421 5.421 28 C 0.065 3.935 29 C -0.101 4.101 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.936 11.756 -9.714 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.033 4.033 3 N -0.176 5.176 4 C -0.014 4.014 5 C -0.156 4.156 6 C -0.140 4.140 7 C 0.359 3.641 8 O -0.423 6.423 9 N -0.345 5.345 10 C 0.054 3.946 11 H 0.097 0.903 12 C -0.154 4.154 13 C -0.143 4.143 14 C -0.167 4.167 15 C 0.070 3.930 16 H 0.058 0.942 17 N -0.376 5.376 18 C -0.367 4.367 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.799 3.201 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.154 4.154 27 N -0.138 5.138 28 C -0.080 4.080 29 C -0.159 4.159 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.117 0.883 48 H 0.097 0.903 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.225 12.586 -9.725 28.980 hybrid contribution 0.910 -0.995 0.677 1.509 sum -23.315 11.591 -9.048 27.564 Atomic orbital electron populations 1.21045 0.84127 1.05787 1.05306 1.23194 1.00618 0.88231 0.91306 1.68392 1.07413 1.30029 1.11782 1.22495 0.90357 0.96825 0.91703 1.20968 0.99593 0.90638 1.04437 1.21799 0.95156 0.90973 1.06122 1.17775 0.85497 0.84099 0.76682 1.90729 1.69088 1.31483 1.51033 1.45896 1.07243 1.09378 1.72019 1.20890 0.78174 0.98693 0.96892 0.90306 1.21813 0.96016 1.02291 0.95315 1.21405 0.94452 0.97632 1.00832 1.22101 0.99923 0.97828 0.96869 1.20289 0.91608 0.89461 0.91669 0.94222 1.42587 1.17250 1.13503 1.64229 1.19595 0.93592 0.98171 1.25385 0.90827 1.25518 1.02156 0.96226 1.02990 1.69808 1.38676 1.04260 1.49307 0.85193 0.80126 0.76417 0.78379 1.21570 1.22246 1.19519 1.21869 0.95975 0.97416 1.00143 1.68148 1.09962 1.28216 1.07497 1.22827 0.89445 0.98788 0.96951 1.20954 0.99956 0.89929 1.05024 0.87695 0.86763 0.89779 0.89405 0.89848 0.88796 0.74949 0.91198 0.91661 0.90468 0.91894 0.93774 0.92980 0.79520 0.94098 0.90985 0.92260 0.88255 0.90303 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.78 71.24 0.70 0.00 16 2 C 0.11 1.79 6.79 42.63 0.29 2.08 16 3 N -0.46 -9.98 10.34 -170.49 -1.76 -11.74 16 4 C 0.12 3.02 6.82 42.81 0.29 3.31 16 5 C -0.10 -2.15 8.88 71.23 0.63 -1.52 16 6 C 0.00 -0.03 6.75 41.89 0.28 0.25 16 7 C 0.57 15.99 7.71 86.88 0.67 16.66 16 8 O -0.55 -16.96 13.00 -3.76 -0.05 -17.00 16 9 N -0.70 -18.11 5.07 -445.11 -2.26 -20.37 16 10 C 0.16 4.45 2.45 44.99 0.11 4.56 16 11 H 0.08 2.44 7.58 -2.39 -0.02 2.42 16 12 C -0.12 -3.00 5.50 30.59 0.17 -2.84 16 13 C -0.10 -2.85 5.92 30.59 0.18 -2.66 16 14 C -0.13 -4.42 5.50 30.59 0.17 -4.25 16 15 C 0.18 6.99 2.77 44.98 0.12 7.11 16 16 H 0.04 1.62 8.08 -2.38 -0.02 1.60 16 17 N -0.74 -36.96 5.12 -323.01 -1.65 -38.62 16 18 C -0.24 -13.10 9.93 84.03 0.83 -12.27 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 21 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 22 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.12 -3.72 4.85 30.58 0.15 -3.57 16 27 N -0.42 -9.54 9.65 -172.53 -1.67 -11.21 16 28 C 0.06 1.10 6.79 42.68 0.29 1.39 16 29 C -0.10 -0.84 9.78 71.24 0.70 -0.14 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.13 5.94 -2.39 -0.01 0.11 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 2.32 5.85 -2.38 -0.01 2.31 16 36 H 0.41 9.89 7.97 -92.71 -0.74 9.15 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 44 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.10 0.57 8.14 -2.38 -0.02 0.56 16 48 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.11 0.25 5.94 -2.39 -0.01 0.24 16 Total: -1.00 -70.55 392.12 0.49 -70.06 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.49 Total: 35.33 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.05 Total: 4.15 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -7.05 Total: -141.07 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -70.55 0.49 -70.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981212540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.186 kcal (2) G-P(sol) polarization free energy of solvation -70.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds