Wall clock time and date at job start Tue Mar 31 2020 17:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39875 * 126.04019 * 2 1 4 4 N 1.30837 * 108.20533 * 180.02562 * 3 2 1 5 5 N 1.40087 * 108.20156 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.03404 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47544 * 305.03058 * 6 5 4 8 8 O 1.21285 * 119.99624 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00385 * 179.97438 * 7 6 5 10 10 C 1.48656 * 125.78018 * 359.97438 * 9 7 6 11 11 C 1.53061 * 103.44516 * 155.64322 * 10 9 7 12 12 H 1.09002 * 110.55172 * 284.33363 * 11 10 9 13 13 C 1.51617 * 116.67978 * 156.95591 * 11 10 9 14 14 C 1.53995 * 106.93147 * 184.52245 * 13 11 10 15 15 C 1.52523 * 112.49582 * 56.04893 * 14 13 11 16 16 C 1.53842 * 111.66727 * 306.49778 * 15 14 13 17 17 H 1.09004 * 109.93756 * 297.81738 * 16 15 14 18 18 N 1.46502 * 109.94251 * 176.58475 * 16 15 14 19 19 C 1.36938 * 120.00227 * 87.40143 * 18 16 15 20 20 H 1.08002 * 119.99816 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99845 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99814 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47287 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46898 * 120.00355 * 23 21 19 26 26 H 1.48501 * 109.47009 * 240.00210 * 23 21 19 27 27 C 1.51435 * 107.04265 * 57.19642 * 16 15 14 28 28 H 1.09007 * 110.21962 * 54.38336 * 27 16 15 29 29 C 1.48242 * 125.78551 * 179.97438 * 9 7 6 30 30 C 1.34949 * 107.92654 * 0.26625 * 5 4 3 31 31 H 1.08996 * 109.47097 * 89.97365 * 1 2 3 32 32 H 1.08999 * 109.46995 * 209.97338 * 1 2 3 33 33 H 1.08995 * 109.46907 * 329.97417 * 1 2 3 34 34 H 1.08001 * 125.89561 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.47319 * 185.02516 * 6 5 4 36 36 H 1.09010 * 109.47009 * 65.02967 * 6 5 4 37 37 H 1.08995 * 110.62967 * 37.14751 * 10 9 7 38 38 H 1.09002 * 110.75812 * 274.19358 * 10 9 7 39 39 H 1.08998 * 109.94585 * 301.96921 * 13 11 10 40 40 H 1.08996 * 109.94337 * 63.22132 * 13 11 10 41 41 H 1.08997 * 108.20104 * 295.53825 * 14 13 11 42 42 H 1.08999 * 108.99654 * 177.10772 * 14 13 11 43 43 H 1.09006 * 109.04279 * 185.93755 * 15 14 13 44 44 H 1.08995 * 108.98659 * 67.02372 * 15 14 13 45 45 H 0.97000 * 119.99364 * 267.40215 * 18 16 15 46 46 H 0.96992 * 120.00539 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.16708 * 295.89606 * 29 9 7 48 48 H 1.08998 * 110.16794 * 57.69327 * 29 9 7 49 49 H 1.07994 * 126.12507 * 179.73734 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1310 0.0000 4 7 3.5755 0.7303 -0.0006 5 7 3.5844 -0.6705 -0.0003 6 6 4.7746 -1.5247 -0.0013 7 6 5.6572 -1.1553 -1.1656 8 8 5.3245 -0.2663 -1.9206 9 7 6.8162 -1.8128 -1.3680 10 6 7.3471 -2.9175 -0.5268 11 6 8.2694 -3.6800 -1.4812 12 1 7.6858 -4.2807 -2.1788 13 6 9.3641 -4.5158 -0.8474 14 6 10.2171 -5.0837 -1.9969 15 6 10.7703 -3.9922 -2.9074 16 6 9.6558 -3.0689 -3.4291 17 1 8.9496 -3.6417 -4.0303 18 7 10.2362 -1.9892 -4.2315 19 6 10.4574 -2.1738 -5.5702 20 1 10.2036 -3.1152 -6.0347 21 6 11.0068 -1.1505 -6.3304 22 7 11.3156 -0.0030 -5.7645 23 14 11.3092 -1.4026 -8.1565 24 1 10.8798 -2.7699 -8.5452 25 1 10.5315 -0.4014 -8.9298 26 1 12.7562 -1.2365 -8.4461 27 6 8.9538 -2.4921 -2.2176 28 1 9.6758 -2.0122 -1.5568 29 6 7.7776 -1.5569 -2.4670 30 6 2.3031 -1.0941 -0.0056 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3633 0.8897 0.5142 34 1 1.9951 2.1578 0.0004 35 1 4.4728 -2.5682 -0.0909 36 1 5.3236 -1.3840 0.9298 37 1 6.5374 -3.5596 -0.1803 38 1 7.9110 -2.5228 0.3185 39 1 10.0005 -3.8857 -0.2262 40 1 8.9237 -5.3100 -0.2447 41 1 9.5917 -5.7546 -2.5857 42 1 11.0477 -5.6502 -1.5759 43 1 11.2728 -4.4574 -3.7555 44 1 11.4928 -3.3970 -2.3490 45 1 10.4637 -1.1436 -3.8143 46 1 11.6998 0.7119 -6.2955 47 1 7.3167 -1.7806 -3.4291 48 1 8.1104 -0.5193 -2.4412 49 1 1.9725 -2.1222 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992639691.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:09 Heat of formation + Delta-G solvation = 57.174151 kcal Electronic energy + Delta-G solvation = -28695.145068 eV Core-core repulsion = 24852.033827 eV Total energy + Delta-G solvation = -3843.111242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36990 -40.37767 -38.59339 -35.58922 -34.01931 -33.83161 -31.78355 -31.55660 -30.74035 -29.20138 -28.37836 -26.83524 -25.85558 -24.50168 -23.28451 -21.61117 -20.85072 -20.55099 -20.42440 -19.74948 -19.20109 -17.39291 -17.12304 -16.88773 -15.92078 -15.51146 -15.14777 -14.96482 -14.40637 -14.24434 -14.21775 -14.08050 -13.65996 -13.55607 -13.23520 -13.11488 -13.00619 -12.83393 -12.64571 -12.53615 -12.20933 -12.18170 -12.04104 -11.87841 -11.51304 -11.02892 -10.92181 -10.84117 -10.59188 -10.54561 -10.31561 -10.24738 -10.15661 -10.04848 -9.81794 -9.52628 -9.38874 -8.90830 -8.61111 -8.43581 -6.98256 -5.77400 -3.06811 1.74276 2.24003 2.55473 2.74424 2.93892 3.43112 3.48515 3.51051 4.12515 4.34261 4.39694 4.55909 4.60365 4.73785 4.75941 4.87486 4.90479 5.11727 5.14647 5.25482 5.29097 5.30543 5.42307 5.52732 5.53849 5.54621 5.65684 5.66816 5.77078 5.80705 5.83293 5.89361 6.00482 6.00919 6.02099 6.09982 6.21305 6.29063 6.36468 6.47782 6.55234 6.56587 6.59160 6.82139 6.83714 7.04191 7.47643 7.63810 7.69502 8.12777 8.40392 9.52049 10.08046 10.42438 11.45027 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.002759 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.895509 B =10145.994261 C =11807.050429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.241 4.241 3 C 0.042 3.958 4 N -0.262 5.262 5 N -0.362 5.362 6 C 0.122 3.878 7 C 0.510 3.490 8 O -0.508 6.508 9 N -0.622 5.622 10 C 0.105 3.895 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.101 4.101 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.196 3.804 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.102 4.102 28 H 0.078 0.922 29 C 0.128 3.872 30 C 0.050 3.950 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.181 0.819 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 -9.399 17.964 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.253 4.253 3 C -0.145 4.145 4 N -0.082 5.082 5 N -0.145 5.145 6 C -0.003 4.003 7 C 0.296 3.704 8 O -0.382 6.382 9 N -0.358 5.358 10 C -0.018 4.018 11 C -0.126 4.126 12 H 0.103 0.897 13 C -0.139 4.139 14 C -0.153 4.153 15 C -0.178 4.178 16 C 0.085 3.915 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.122 4.122 28 H 0.097 0.903 29 C 0.007 3.993 30 C -0.095 4.095 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.198 0.802 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.477 -8.627 17.354 24.191 hybrid contribution -0.334 -0.153 -0.935 1.005 sum -14.811 -8.780 16.419 23.792 Atomic orbital electron populations 1.20029 0.89348 1.01922 1.01519 1.20120 0.97003 0.91919 1.16221 1.23844 0.90040 0.99817 1.00813 1.77526 1.20914 0.88121 1.21605 1.47977 1.04351 1.04899 1.57259 1.21442 0.85366 0.93995 0.99530 1.20073 0.81121 0.82654 0.86583 1.90826 1.71606 1.29482 1.46296 1.49214 1.20361 1.36100 1.30116 1.22173 0.97375 0.88146 0.94071 1.22081 0.96159 0.96691 0.97620 0.89679 1.21335 0.95928 0.98875 0.97748 1.21555 0.98741 0.98583 0.96397 1.22314 1.00120 0.96925 0.98460 1.19935 0.92421 0.89914 0.89191 0.93075 1.42407 1.74621 1.13000 1.06180 1.19248 1.34480 0.98557 0.84818 0.91168 1.24740 1.01857 0.96141 0.98057 1.69659 1.48941 1.04240 1.35003 0.86157 0.77454 0.77234 0.85578 1.20587 1.21864 1.21902 1.22163 0.95964 0.94455 0.99578 0.90322 1.21614 0.88180 1.00138 0.89323 1.22268 0.83817 1.00023 1.03381 0.92165 0.92320 0.91939 0.80196 0.86060 0.87006 0.90867 0.90855 0.91794 0.91752 0.92740 0.92663 0.91888 0.92696 0.78196 0.93517 0.90768 0.90788 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.37 36.01 0.37 -0.14 16 2 C -0.24 -2.55 6.10 -105.05 -0.64 -3.19 16 3 C 0.04 0.53 11.96 -17.36 -0.21 0.32 16 4 N -0.26 -4.03 11.64 30.63 0.36 -3.67 16 5 N -0.36 -4.58 3.40 -62.55 -0.21 -4.80 16 6 C 0.12 1.23 6.02 -5.19 -0.03 1.20 16 7 C 0.51 7.58 7.89 -10.98 -0.09 7.49 16 8 O -0.51 -10.34 16.05 5.55 0.09 -10.25 16 9 N -0.62 -8.42 3.38 -170.87 -0.58 -8.99 16 10 C 0.10 0.97 6.34 -2.82 -0.02 0.96 16 11 C -0.11 -1.16 2.43 -89.89 -0.22 -1.38 16 12 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 13 C -0.10 -0.98 5.79 -26.91 -0.16 -1.13 16 14 C -0.11 -1.35 5.81 -26.46 -0.15 -1.51 16 15 C -0.14 -2.21 5.49 -26.54 -0.15 -2.36 16 16 C 0.20 3.58 2.52 -68.28 -0.17 3.41 16 17 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 18 N -0.72 -17.33 5.05 -53.76 -0.27 -17.60 16 19 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 23 Si 0.90 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.10 -1.53 1.83 -90.36 -0.17 -1.69 16 28 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 29 C 0.13 2.16 6.51 -3.43 -0.02 2.14 16 30 C 0.05 0.51 11.36 -17.22 -0.20 0.31 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.18 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.12 0.73 7.81 -51.93 -0.41 0.32 16 36 H 0.11 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.07 0.45 7.55 -51.93 -0.39 0.06 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.02 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.38 9.96 7.81 -40.82 -0.32 9.64 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 48 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -35.97 394.42 -9.30 -45.27 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.24 Total: 6.70 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.09 Total: -2.66 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.02 Total: -62.45 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.97 -9.30 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992639691.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.444 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds