Wall clock time and date at job start Tue Mar 31 2020 17:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33312 * 126.11046 * 2 1 4 4 C 1.30854 * 109.68745 * 180.27351 * 3 2 1 5 5 N 1.34498 * 109.16222 * 359.76720 * 4 3 2 6 6 C 1.46492 * 126.47170 * 179.97438 * 5 4 3 7 7 C 1.36659 * 126.10186 * 179.88065 * 2 1 3 8 8 C 1.46760 * 126.85033 * 359.97438 * 7 2 1 9 9 O 1.21683 * 120.00096 * 279.27860 * 8 7 2 10 10 N 1.34773 * 120.00054 * 99.27201 * 8 7 2 11 11 C 1.47375 * 125.74772 * 354.81198 * 10 8 7 12 12 C 1.55437 * 106.74555 * 181.09475 * 11 10 8 13 13 H 1.09003 * 112.50393 * 213.26859 * 12 11 10 14 14 C 1.52986 * 106.45112 * 89.99314 * 12 11 10 15 15 C 1.52601 * 111.01897 * 197.04631 * 14 12 11 16 16 C 1.53310 * 108.45761 * 62.28187 * 15 14 12 17 17 C 1.52812 * 108.15651 * 296.15818 * 16 15 14 18 18 H 1.09002 * 109.04708 * 179.63174 * 17 16 15 19 19 N 1.46499 * 109.04144 * 298.57789 * 17 16 15 20 20 C 1.36939 * 120.00081 * 276.04551 * 19 17 16 21 21 H 1.08002 * 120.00084 * 359.72408 * 20 19 17 22 22 C 1.38808 * 119.99790 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00256 * 359.72127 * 22 20 19 24 24 Si 1.86803 * 119.99854 * 179.72418 * 22 20 19 25 25 H 1.48506 * 109.46812 * 59.99848 * 24 22 20 26 26 H 1.48498 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47185 * 300.00327 * 24 22 20 28 28 C 1.50858 * 111.61002 * 59.10698 * 17 16 15 29 29 H 1.08994 * 109.65653 * 184.93812 * 28 17 16 30 30 C 1.47938 * 125.74722 * 174.85176 * 10 8 7 31 31 H 1.08999 * 109.47422 * 270.12165 * 1 2 3 32 32 H 1.08997 * 109.46847 * 30.11862 * 1 2 3 33 33 H 1.08995 * 109.47169 * 150.11757 * 1 2 3 34 34 H 1.07998 * 125.41967 * 179.74133 * 4 3 2 35 35 H 1.09007 * 109.47379 * 274.99220 * 6 5 4 36 36 H 1.09004 * 109.47718 * 34.99300 * 6 5 4 37 37 H 1.08998 * 109.47209 * 154.99694 * 6 5 4 38 38 H 1.09000 * 110.00589 * 61.76813 * 11 10 8 39 39 H 1.09007 * 110.04241 * 300.43748 * 11 10 8 40 40 H 1.08993 * 109.17266 * 76.64252 * 14 12 11 41 41 H 1.09007 * 109.16594 * 317.43486 * 14 12 11 42 42 H 1.09001 * 109.63547 * 302.59768 * 15 14 12 43 43 H 1.08994 * 109.81305 * 182.08162 * 15 14 12 44 44 H 1.09001 * 109.72548 * 176.48575 * 16 15 14 45 45 H 1.09007 * 109.76116 * 55.84111 * 16 15 14 46 46 H 0.96996 * 120.00053 * 96.04353 * 19 17 16 47 47 H 0.97006 * 119.99743 * 180.02562 * 23 22 20 48 48 H 1.09001 * 110.57038 * 323.02420 * 30 10 8 49 49 H 1.09009 * 110.56781 * 85.88898 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5478 0.7071 -0.0059 5 7 3.6121 -0.6364 -0.0047 6 6 4.8304 -1.4499 -0.0105 7 6 2.3123 -1.1042 0.0023 8 6 1.8820 -2.5073 0.0057 9 8 1.5416 -3.0367 1.0471 10 7 1.8638 -3.2094 -1.1445 11 6 2.1441 -2.6699 -2.4870 12 6 1.9732 -3.8472 -3.4874 13 1 2.6564 -3.7779 -4.3340 14 6 0.5074 -3.8345 -3.9252 15 6 0.1155 -5.1636 -4.5643 16 6 0.2698 -6.2709 -3.5152 17 6 1.7471 -6.3648 -3.1358 18 1 1.8725 -7.1446 -2.3846 19 7 2.5246 -6.7188 -4.3260 20 6 2.6460 -8.0307 -4.6994 21 1 2.1722 -8.8048 -4.1139 22 6 3.3831 -8.3660 -5.8267 23 7 3.9608 -7.4227 -6.5399 24 14 3.5551 -10.1563 -6.3317 25 1 2.2102 -10.7263 -6.5996 26 1 4.3842 -10.2465 -7.5603 27 1 4.2068 -10.9190 -5.2369 28 6 2.2624 -5.0599 -2.5814 29 1 3.3352 -5.1351 -2.4039 30 6 1.5583 -4.6512 -1.2722 31 1 -0.3634 0.0022 1.0276 32 1 -0.3633 0.8889 -0.5157 33 1 -0.3633 -0.8910 -0.5120 34 1 4.3970 1.3743 -0.0113 35 1 5.1767 -1.5784 -1.0361 36 1 5.6034 -0.9509 0.5741 37 1 4.6178 -2.4257 0.4261 38 1 3.1644 -2.2889 -2.5303 39 1 1.4387 -1.8735 -2.7244 40 1 0.3563 -3.0319 -4.6470 41 1 -0.1244 -3.6557 -3.0551 42 1 0.7687 -5.3690 -5.4124 43 1 -0.9201 -5.1202 -4.9016 44 1 -0.0644 -7.2212 -3.9314 45 1 -0.3219 -6.0274 -2.6326 46 1 2.9534 -6.0239 -4.8495 47 1 4.4756 -7.6571 -7.3280 48 1 1.9667 -5.2056 -0.4272 49 1 0.4826 -4.8092 -1.3514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992722127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:01 Heat of formation + Delta-G solvation = 38.170359 kcal Electronic energy + Delta-G solvation = -29915.644453 eV Core-core repulsion = 26071.709145 eV Total energy + Delta-G solvation = -3843.935308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42381 -40.50216 -38.51710 -35.64669 -34.70531 -33.44658 -31.74960 -31.49105 -30.49621 -29.44576 -28.51041 -26.67970 -26.27090 -24.89388 -23.40393 -22.09398 -21.84257 -21.10220 -20.76343 -19.18416 -18.20699 -17.49352 -17.22263 -16.64927 -16.14894 -15.77173 -15.54275 -15.08085 -14.64807 -14.39438 -14.01633 -13.88724 -13.73167 -13.62088 -13.35498 -13.34089 -12.92340 -12.88618 -12.78629 -12.54448 -12.50940 -12.33983 -11.74491 -11.66268 -11.42892 -11.23613 -11.02459 -10.86908 -10.76868 -10.58885 -10.20527 -10.20426 -10.00270 -9.83523 -9.81404 -9.63511 -9.54004 -8.90218 -8.71730 -8.58215 -7.00678 -5.81792 -3.09880 1.48085 2.01774 2.62298 2.77553 3.03009 3.40434 3.45771 3.45819 4.21764 4.29810 4.39318 4.51927 4.53434 4.73387 4.76798 4.87462 4.92181 5.02370 5.08923 5.20940 5.34600 5.43302 5.50349 5.55218 5.55282 5.63905 5.69377 5.73673 5.74806 5.78383 5.84488 5.90126 5.92920 5.98947 6.05888 6.15080 6.26953 6.33736 6.38291 6.38438 6.47210 6.76119 6.80102 6.83026 6.98197 7.06090 7.33932 7.65990 7.75332 7.93095 8.36931 9.48735 10.04928 10.40331 11.40699 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.020104 B = 0.002976 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.389112 B = 9406.709923 C = 9822.113592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.057 3.943 3 N -0.492 5.492 4 C 0.199 3.801 5 N -0.438 5.438 6 C 0.068 3.932 7 C -0.069 4.069 8 C 0.609 3.391 9 O -0.527 6.527 10 N -0.604 5.604 11 C 0.104 3.896 12 C -0.085 4.085 13 H 0.102 0.898 14 C -0.109 4.109 15 C -0.113 4.113 16 C -0.135 4.135 17 C 0.189 3.811 18 H 0.048 0.952 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.094 4.094 29 H 0.079 0.921 30 C 0.113 3.887 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.211 0.789 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 15.092 10.417 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 N -0.211 5.211 4 C -0.083 4.083 5 N -0.122 5.122 6 C -0.074 4.074 7 C -0.186 4.186 8 C 0.395 3.605 9 O -0.402 6.402 10 N -0.338 5.338 11 C -0.019 4.019 12 C -0.104 4.104 13 H 0.120 0.880 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.175 4.175 17 C 0.078 3.922 18 H 0.066 0.934 19 N -0.360 5.360 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.114 4.114 29 H 0.098 0.902 30 C -0.009 4.009 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.136 15.349 11.033 19.024 hybrid contribution 0.854 -1.482 -0.592 1.810 sum -1.281 13.867 10.442 17.406 Atomic orbital electron populations 1.20114 0.87117 1.02864 1.02847 1.20812 0.96384 0.86756 1.03619 1.70003 1.00367 1.30068 1.20632 1.24967 0.97201 0.81595 1.04522 1.45289 1.05882 1.07770 1.53214 1.22185 0.84545 0.96397 1.04315 1.20652 0.84818 0.94854 1.18266 1.16479 0.78379 0.83068 0.82622 1.90852 1.48457 1.69740 1.31199 1.48689 1.67833 1.10871 1.06379 1.22513 1.00408 0.97337 0.81609 1.22247 0.98401 0.92826 0.96906 0.88001 1.21526 0.94631 0.98480 0.99979 1.21385 1.00323 0.93668 0.99634 1.22201 0.98831 0.98925 0.97544 1.19518 0.90350 0.91925 0.90371 0.93434 1.42370 1.60008 1.05806 1.27858 1.19184 1.26205 0.84364 1.07057 0.91271 1.24695 1.00616 0.97264 0.98217 1.69637 1.38496 1.30999 1.19064 0.86307 0.77510 0.84935 0.77661 1.21311 1.21780 1.21353 1.21873 1.00680 0.95792 0.93011 0.90226 1.22421 1.00858 0.79119 0.98492 0.90749 0.90529 0.91391 0.77264 0.89645 0.88819 0.89485 0.92203 0.91142 0.92521 0.92594 0.90189 0.93350 0.91786 0.93711 0.78244 0.93519 0.90371 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.24 36.01 0.37 -0.42 16 2 C 0.06 0.74 7.15 -82.52 -0.59 0.15 16 3 N -0.49 -6.23 11.20 -10.65 -0.12 -6.35 16 4 C 0.20 1.93 12.52 -90.57 -1.13 0.79 16 5 N -0.44 -4.50 3.17 -121.98 -0.39 -4.88 16 6 C 0.07 0.48 11.07 59.84 0.66 1.14 16 7 C -0.07 -0.90 5.85 -82.15 -0.48 -1.38 16 8 C 0.61 8.81 6.76 -12.82 -0.09 8.72 16 9 O -0.53 -9.34 17.43 5.20 0.09 -9.25 16 10 N -0.60 -7.90 3.34 -171.08 -0.57 -8.47 16 11 C 0.10 1.22 5.78 -2.27 -0.01 1.21 16 12 C -0.09 -1.12 3.27 -88.75 -0.29 -1.41 16 13 H 0.10 1.45 7.93 -51.93 -0.41 1.03 16 14 C -0.11 -1.41 4.60 -26.94 -0.12 -1.54 16 15 C -0.11 -1.74 5.85 -26.78 -0.16 -1.90 16 16 C -0.13 -2.20 5.42 -26.67 -0.14 -2.35 16 17 C 0.19 3.36 2.53 -69.10 -0.18 3.18 16 18 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 19 N -0.72 -16.25 4.17 -54.57 -0.23 -16.47 16 20 C -0.24 -6.16 9.90 -15.06 -0.15 -6.31 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 24 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.09 -1.38 2.42 -90.50 -0.22 -1.60 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 C 0.11 1.54 5.79 -2.64 -0.02 1.52 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.73 7.79 -51.93 -0.40 0.33 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.80 7.77 -51.93 -0.40 0.39 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.71 6.93 -51.92 -0.36 0.35 16 42 H 0.08 1.49 7.38 -51.93 -0.38 1.11 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.04 0.64 6.69 -51.92 -0.35 0.29 16 46 H 0.38 9.18 7.22 -40.82 -0.29 8.88 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 49 H 0.08 1.05 5.78 -51.92 -0.30 0.75 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -32.25 386.98 -10.26 -42.51 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.93 Total: 7.08 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.64 Total: -0.60 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.58 Total: -62.20 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.25 -10.26 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992722127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.676 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds