Wall clock time and date at job start Tue Mar 31 2020 17:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30860 * 125.41794 * 2 1 4 4 C 1.33316 * 109.68078 * 180.16373 * 3 2 1 5 5 C 1.50702 * 126.10497 * 179.86033 * 4 3 2 6 6 C 1.36662 * 107.78961 * 359.59519 * 4 3 2 7 7 C 1.46766 * 126.84653 * 180.23707 * 6 4 3 8 8 O 1.21684 * 120.00102 * 6.21263 * 7 6 4 9 9 N 1.34776 * 120.00153 * 186.20962 * 7 6 4 10 10 C 1.48661 * 125.78274 * 5.25769 * 9 7 6 11 11 C 1.53296 * 103.32608 * 155.54486 * 10 9 7 12 12 H 1.09001 * 110.75434 * 284.61694 * 11 10 9 13 13 C 1.51621 * 117.39760 * 156.43183 * 11 10 9 14 14 C 1.53815 * 107.01901 * 183.50168 * 13 11 10 15 15 C 1.52528 * 111.69739 * 57.54041 * 14 13 11 16 16 C 1.51888 * 112.20904 * 306.64001 * 15 14 13 17 17 H 1.09003 * 108.49126 * 296.67502 * 16 15 14 18 18 N 1.46499 * 110.38906 * 176.08712 * 16 15 14 19 19 C 1.36934 * 120.00505 * 85.89094 * 18 16 15 20 20 H 1.08000 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00554 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00519 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47457 * 89.99880 * 23 21 19 25 25 H 1.48506 * 109.47354 * 210.00326 * 23 21 19 26 26 H 1.48508 * 109.46910 * 329.99906 * 23 21 19 27 27 C 1.51443 * 108.04938 * 55.83461 * 16 15 14 28 28 H 1.08991 * 109.87038 * 55.85974 * 27 16 15 29 29 C 1.48240 * 125.78781 * 185.56851 * 9 7 6 30 30 N 1.34496 * 125.41610 * 179.71605 * 2 1 3 31 31 H 0.97004 * 126.47480 * 359.96521 * 30 2 1 32 32 H 1.09002 * 109.47358 * 270.28420 * 1 2 3 33 33 H 1.09004 * 109.47350 * 30.28226 * 1 2 3 34 34 H 1.09005 * 109.47298 * 150.28383 * 1 2 3 35 35 H 1.09002 * 109.47073 * 269.68748 * 5 4 3 36 36 H 1.08997 * 109.47015 * 29.69132 * 5 4 3 37 37 H 1.09002 * 109.46936 * 149.68956 * 5 4 3 38 38 H 1.09007 * 110.63139 * 274.12808 * 10 9 7 39 39 H 1.08999 * 110.63133 * 37.14843 * 10 9 7 40 40 H 1.08996 * 109.94459 * 302.87967 * 13 11 10 41 41 H 1.09001 * 109.94533 * 64.03921 * 13 11 10 42 42 H 1.08999 * 109.03055 * 178.11171 * 14 13 11 43 43 H 1.09002 * 109.03486 * 297.03875 * 14 13 11 44 44 H 1.09000 * 109.04281 * 66.51660 * 15 14 13 45 45 H 1.09004 * 109.04137 * 185.46053 * 15 14 13 46 46 H 0.97003 * 119.99604 * 265.89178 * 18 16 15 47 47 H 0.97001 * 120.00220 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.16948 * 295.89782 * 29 9 7 49 49 H 1.08996 * 110.17268 * 57.62218 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0036 5 6 4.7335 1.6359 -0.0078 6 6 3.5975 -0.6609 0.0032 7 6 4.8028 -1.4983 0.0073 8 8 5.9003 -0.9846 0.1186 9 7 4.6941 -2.8364 -0.1123 10 6 3.4361 -3.5872 -0.3646 11 6 3.9245 -4.8864 -1.0155 12 1 4.2192 -4.7129 -2.0505 13 6 3.0197 -6.0990 -0.9171 14 6 3.7718 -7.2754 -1.5623 15 6 5.1177 -7.5220 -0.8883 16 6 5.9701 -6.2661 -0.8317 17 1 6.1987 -5.9571 -1.8517 18 7 7.2107 -6.5239 -0.0965 19 6 8.2984 -7.0405 -0.7486 20 1 8.2415 -7.2582 -1.8049 21 6 9.4737 -7.2853 -0.0520 22 7 9.5426 -7.0214 1.2357 23 14 10.9576 -7.9893 -0.9417 24 1 11.7925 -6.8793 -1.4669 25 1 11.7594 -8.8074 0.0034 26 1 10.5006 -8.8412 -2.0691 27 6 5.1700 -5.1871 -0.1322 28 1 4.8527 -5.5387 0.8494 29 6 5.8077 -3.8093 -0.0080 30 7 2.2864 -1.0961 0.0054 31 1 1.9849 -2.0181 0.0105 32 1 -0.3634 0.0051 1.0276 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3634 -0.8925 -0.5094 35 1 5.0196 1.8553 -1.0365 36 1 4.4692 2.5627 0.5014 37 1 5.5689 1.1631 0.5087 38 1 2.9184 -3.7950 0.5719 39 1 2.7900 -3.0355 -1.0474 40 1 2.8085 -6.3215 0.1288 41 1 2.0888 -5.9127 -1.4526 42 1 3.1624 -8.1753 -1.4793 43 1 3.9385 -7.0554 -2.6168 44 1 4.9469 -7.8641 0.1324 45 1 5.6540 -8.2959 -1.4374 46 1 7.2617 -6.3287 0.8523 47 1 10.3641 -7.1921 1.7225 48 1 6.5217 -3.6513 -0.8163 49 1 6.3048 -3.7097 0.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992814372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:45 Heat of formation + Delta-G solvation = 30.371491 kcal Electronic energy + Delta-G solvation = -29346.676040 eV Core-core repulsion = 25502.402548 eV Total energy + Delta-G solvation = -3844.273492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51911 -40.38324 -38.49959 -35.83433 -34.08984 -33.57027 -32.51573 -31.58751 -30.59116 -29.38509 -29.01356 -27.01547 -26.85222 -24.60442 -23.35706 -21.76132 -21.62204 -20.67594 -20.44213 -19.76217 -19.55155 -17.72307 -17.14416 -16.29663 -16.19283 -15.83227 -15.30201 -15.04522 -14.44960 -14.30622 -14.08706 -14.05772 -13.78064 -13.41104 -13.30179 -13.17447 -12.96104 -12.76111 -12.71567 -12.60701 -12.44511 -12.26212 -12.13979 -11.95912 -11.58074 -11.04990 -10.97753 -10.87524 -10.65705 -10.54927 -10.34226 -10.28712 -10.20199 -10.15735 -9.90324 -9.81120 -9.53700 -8.93283 -8.81303 -8.42938 -7.01416 -5.79453 -3.09100 1.14134 2.56459 2.60541 2.88666 3.25266 3.42390 3.47468 3.49042 3.99518 4.19052 4.36288 4.50381 4.59196 4.65515 4.82863 4.91057 4.96122 5.03260 5.06694 5.13613 5.22297 5.35069 5.43150 5.45339 5.49654 5.56463 5.59167 5.67851 5.74364 5.74695 5.81728 5.87375 5.95345 5.96910 6.03185 6.04014 6.16122 6.26379 6.30766 6.44932 6.47863 6.50642 6.55124 6.80164 6.96453 7.01084 7.39806 7.67256 7.73523 8.09575 8.38285 9.50015 10.05211 10.39854 11.42869 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003073 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.409679 B = 9108.216273 C =10620.120629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.233 3.767 3 N -0.495 5.495 4 C 0.097 3.903 5 C -0.079 4.079 6 C -0.085 4.085 7 C 0.606 3.394 8 O -0.518 6.518 9 N -0.622 5.622 10 C 0.098 3.902 11 C -0.104 4.104 12 H 0.088 0.912 13 C -0.100 4.100 14 C -0.114 4.114 15 C -0.139 4.139 16 C 0.196 3.804 17 H 0.048 0.952 18 N -0.722 5.722 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.101 4.101 28 H 0.078 0.922 29 C 0.128 3.872 30 N -0.555 5.555 31 H 0.421 0.579 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 9.054 -3.339 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.031 4.031 3 N -0.216 5.216 4 C -0.038 4.038 5 C -0.137 4.137 6 C -0.200 4.200 7 C 0.395 3.605 8 O -0.394 6.394 9 N -0.356 5.356 10 C -0.025 4.025 11 C -0.124 4.124 12 H 0.106 0.894 13 C -0.138 4.138 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.086 3.914 17 H 0.066 0.934 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.121 4.121 28 H 0.097 0.903 29 C 0.007 3.993 30 N -0.165 5.165 31 H 0.264 0.736 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.526 10.135 -3.368 24.030 hybrid contribution 0.878 -1.823 -0.091 2.026 sum -20.648 8.312 -3.459 22.525 Atomic orbital electron populations 1.20295 0.84276 1.04484 1.04049 1.23411 0.95825 0.81735 1.02111 1.70079 1.01648 1.28342 1.21573 1.21068 0.93135 0.90230 0.99318 1.20323 0.93180 0.97089 1.03077 1.20906 0.83703 0.95312 1.20114 1.16448 0.86931 0.79934 0.77203 1.90845 1.26133 1.71970 1.50478 1.49123 1.10090 1.05009 1.71401 1.22281 0.87263 0.93472 0.99503 1.22105 0.97146 0.92775 1.00350 0.89377 1.21317 0.97206 0.93917 1.01394 1.21526 0.96858 0.97065 0.99746 1.21991 0.94357 1.01017 1.00552 1.19496 0.86446 0.90449 0.95032 0.93423 1.42374 1.07851 1.76646 1.09307 1.19196 0.90267 1.34499 0.93241 0.91220 1.24731 0.98084 1.02105 0.95766 1.69654 1.27215 1.54135 1.06879 0.86226 0.83169 0.78584 0.78404 1.21654 1.21802 1.20813 1.22148 0.95647 0.94588 0.99706 0.90334 1.21645 0.88165 0.86118 1.03342 1.43741 1.06100 1.10418 1.56240 0.73560 0.89615 0.88666 0.90452 0.90798 0.91070 0.88958 0.91049 0.91297 0.91525 0.92076 0.92493 0.92488 0.92735 0.91759 0.78188 0.93463 0.90360 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.23 2.31 8.12 -155.61 -1.26 1.05 16 3 N -0.49 -6.47 11.20 -6.84 -0.08 -6.55 16 4 C 0.10 1.35 7.14 -82.52 -0.59 0.76 16 5 C -0.08 -1.00 9.95 36.01 0.36 -0.64 16 6 C -0.09 -1.16 6.84 -82.14 -0.56 -1.72 16 7 C 0.61 9.58 7.82 -12.81 -0.10 9.48 16 8 O -0.52 -9.88 15.15 5.20 0.08 -9.80 16 9 N -0.62 -8.76 3.38 -172.23 -0.58 -9.34 16 10 C 0.10 0.97 4.95 -2.70 -0.01 0.96 16 11 C -0.10 -1.15 2.48 -89.77 -0.22 -1.37 16 12 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 13 C -0.10 -0.95 5.75 -27.01 -0.16 -1.11 16 14 C -0.11 -1.31 5.84 -26.55 -0.16 -1.47 16 15 C -0.14 -2.19 5.40 -27.54 -0.15 -2.34 16 16 C 0.20 3.53 2.41 -69.28 -0.17 3.36 16 17 H 0.05 0.90 8.01 -51.93 -0.42 0.49 16 18 N -0.72 -17.01 5.06 -54.75 -0.28 -17.29 16 19 C -0.24 -6.45 9.95 -15.06 -0.15 -6.60 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.10 -1.49 1.81 -90.36 -0.16 -1.65 16 28 H 0.08 1.16 7.97 -51.93 -0.41 0.75 16 29 C 0.13 2.11 6.52 -3.43 -0.02 2.08 16 30 N -0.56 -5.51 5.45 -7.02 -0.04 -5.54 16 31 H 0.42 2.99 5.53 -40.82 -0.23 2.77 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.29 6.37 -51.93 -0.33 0.96 16 38 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 39 H 0.07 0.56 6.22 -51.93 -0.32 0.23 16 40 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.38 9.75 7.81 -40.82 -0.32 9.43 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 49 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -33.31 384.85 -10.36 -43.66 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.89 Total: 8.43 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -3.07 Total: 0.42 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -0.25 Total: -65.68 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.31 -10.36 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992814372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.034 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds