Wall clock time and date at job start Tue Mar 31 2020 17:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30860 * 125.41794 * 2 1 4 4 C 1.33316 * 109.68078 * 180.16373 * 3 2 1 5 5 C 1.50702 * 126.10497 * 179.86033 * 4 3 2 6 6 C 1.36662 * 107.78961 * 359.59519 * 4 3 2 7 7 C 1.46766 * 126.84653 * 180.23707 * 6 4 3 8 8 O 1.21684 * 120.00102 * 6.21263 * 7 6 4 9 9 N 1.34776 * 120.00153 * 186.20962 * 7 6 4 10 10 C 1.48661 * 125.78274 * 5.25769 * 9 7 6 11 11 C 1.53296 * 103.32608 * 155.54486 * 10 9 7 12 12 H 1.09001 * 110.75434 * 284.61694 * 11 10 9 13 13 C 1.51621 * 117.39760 * 156.43183 * 11 10 9 14 14 C 1.53815 * 107.01901 * 183.50168 * 13 11 10 15 15 C 1.52528 * 111.69739 * 57.54041 * 14 13 11 16 16 C 1.51888 * 112.20904 * 306.64001 * 15 14 13 17 17 H 1.09003 * 108.49126 * 296.67502 * 16 15 14 18 18 N 1.46499 * 110.38906 * 176.08712 * 16 15 14 19 19 C 1.36934 * 120.00505 * 85.89094 * 18 16 15 20 20 H 1.08000 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00554 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00519 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47457 * 89.99880 * 23 21 19 25 25 H 1.48506 * 109.47354 * 210.00326 * 23 21 19 26 26 H 1.48508 * 109.46910 * 329.99906 * 23 21 19 27 27 C 1.51443 * 108.04938 * 55.83461 * 16 15 14 28 28 H 1.08991 * 109.87038 * 55.85974 * 27 16 15 29 29 C 1.48240 * 125.78781 * 185.56851 * 9 7 6 30 30 N 1.34496 * 125.41610 * 179.71605 * 2 1 3 31 31 H 0.97004 * 126.47480 * 359.96521 * 30 2 1 32 32 H 1.09002 * 109.47358 * 270.28420 * 1 2 3 33 33 H 1.09004 * 109.47350 * 30.28226 * 1 2 3 34 34 H 1.09005 * 109.47298 * 150.28383 * 1 2 3 35 35 H 1.09002 * 109.47073 * 269.68748 * 5 4 3 36 36 H 1.08997 * 109.47015 * 29.69132 * 5 4 3 37 37 H 1.09002 * 109.46936 * 149.68956 * 5 4 3 38 38 H 1.09007 * 110.63139 * 274.12808 * 10 9 7 39 39 H 1.08999 * 110.63133 * 37.14843 * 10 9 7 40 40 H 1.08996 * 109.94459 * 302.87967 * 13 11 10 41 41 H 1.09001 * 109.94533 * 64.03921 * 13 11 10 42 42 H 1.08999 * 109.03055 * 178.11171 * 14 13 11 43 43 H 1.09002 * 109.03486 * 297.03875 * 14 13 11 44 44 H 1.09000 * 109.04281 * 66.51660 * 15 14 13 45 45 H 1.09004 * 109.04137 * 185.46053 * 15 14 13 46 46 H 0.97003 * 119.99604 * 265.89178 * 18 16 15 47 47 H 0.97001 * 120.00220 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.16948 * 295.89782 * 29 9 7 49 49 H 1.08996 * 110.17268 * 57.62218 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0036 5 6 4.7335 1.6359 -0.0078 6 6 3.5975 -0.6609 0.0032 7 6 4.8028 -1.4983 0.0073 8 8 5.9003 -0.9846 0.1186 9 7 4.6941 -2.8364 -0.1123 10 6 3.4361 -3.5872 -0.3646 11 6 3.9245 -4.8864 -1.0155 12 1 4.2192 -4.7129 -2.0505 13 6 3.0197 -6.0990 -0.9171 14 6 3.7718 -7.2754 -1.5623 15 6 5.1177 -7.5220 -0.8883 16 6 5.9701 -6.2661 -0.8317 17 1 6.1987 -5.9571 -1.8517 18 7 7.2107 -6.5239 -0.0965 19 6 8.2984 -7.0405 -0.7486 20 1 8.2415 -7.2582 -1.8049 21 6 9.4737 -7.2853 -0.0520 22 7 9.5426 -7.0214 1.2357 23 14 10.9576 -7.9893 -0.9417 24 1 11.7925 -6.8793 -1.4669 25 1 11.7594 -8.8074 0.0034 26 1 10.5006 -8.8412 -2.0691 27 6 5.1700 -5.1871 -0.1322 28 1 4.8527 -5.5387 0.8494 29 6 5.8077 -3.8093 -0.0080 30 7 2.2864 -1.0961 0.0054 31 1 1.9849 -2.0181 0.0105 32 1 -0.3634 0.0051 1.0276 33 1 -0.3634 0.8875 -0.5182 34 1 -0.3634 -0.8925 -0.5094 35 1 5.0196 1.8553 -1.0365 36 1 4.4692 2.5627 0.5014 37 1 5.5689 1.1631 0.5087 38 1 2.9184 -3.7950 0.5719 39 1 2.7900 -3.0355 -1.0474 40 1 2.8085 -6.3215 0.1288 41 1 2.0888 -5.9127 -1.4526 42 1 3.1624 -8.1753 -1.4793 43 1 3.9385 -7.0554 -2.6168 44 1 4.9469 -7.8641 0.1324 45 1 5.6540 -8.2959 -1.4374 46 1 7.2617 -6.3287 0.8523 47 1 10.3641 -7.1921 1.7225 48 1 6.5217 -3.6513 -0.8163 49 1 6.3048 -3.7097 0.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992814372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:45 Heat of formation + Delta-G solvation = 8.297469 kcal Electronic energy + Delta-G solvation = -29347.633241 eV Core-core repulsion = 25502.402548 eV Total energy + Delta-G solvation = -3845.230694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.42127 -41.52742 -39.74159 -37.17435 -35.66973 -34.49037 -33.44508 -33.21755 -31.69337 -30.60451 -30.07754 -28.27261 -27.82751 -26.00830 -24.98082 -22.80292 -22.52585 -21.81901 -21.52851 -21.03331 -20.50743 -19.22792 -18.61661 -17.44556 -17.18784 -16.90543 -16.74534 -16.30980 -15.78311 -15.62834 -15.22266 -15.19777 -14.93034 -14.79124 -14.33065 -14.09004 -14.02617 -13.90971 -13.70970 -13.50689 -13.33778 -13.28636 -13.19648 -13.05136 -12.87015 -12.85958 -12.64555 -12.21538 -12.05099 -11.91674 -11.79963 -11.62333 -11.47859 -11.27244 -11.10586 -11.01788 -10.89020 -10.86740 -9.99773 -9.40075 -9.01443 -7.95342 -5.23123 0.15026 1.44142 1.46124 1.53545 1.56384 1.69220 1.94667 2.13809 2.54074 3.15372 3.26773 3.37279 3.44978 3.58832 3.69060 3.94376 4.00834 4.06137 4.10165 4.21801 4.21977 4.35942 4.44316 4.52241 4.54318 4.59023 4.63985 4.68494 4.71660 4.74342 4.76865 4.79083 4.80354 4.94767 5.00577 5.06835 5.08163 5.17055 5.24938 5.28374 5.33510 5.39992 5.50161 5.50561 5.51325 5.68519 6.24503 6.27012 6.29505 6.82881 6.91565 7.33157 8.09563 8.31372 9.27988 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003073 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.409679 B = 9108.216273 C =10620.120629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.253 3.747 3 N -0.526 5.526 4 C 0.083 3.917 5 C -0.077 4.077 6 C -0.104 4.104 7 C 0.601 3.399 8 O -0.567 6.567 9 N -0.620 5.620 10 C 0.097 3.903 11 C -0.088 4.088 12 H 0.083 0.917 13 C -0.091 4.091 14 C -0.108 4.108 15 C -0.129 4.129 16 C 0.191 3.809 17 H 0.035 0.965 18 N -0.735 5.735 19 C -0.234 4.234 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.966 3.034 24 H -0.292 1.292 25 H -0.296 1.296 26 H -0.268 1.268 27 C -0.097 4.097 28 H 0.083 0.917 29 C 0.134 3.866 30 N -0.542 5.542 31 H 0.436 0.564 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.372 0.628 47 H 0.249 0.751 48 H 0.045 0.955 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.776 8.627 -4.568 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 N -0.248 5.248 4 C -0.052 4.052 5 C -0.135 4.135 6 C -0.219 4.219 7 C 0.391 3.609 8 O -0.447 6.447 9 N -0.353 5.353 10 C -0.024 4.024 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.169 4.169 16 C 0.083 3.917 17 H 0.053 0.947 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.796 3.204 24 H -0.219 1.219 25 H -0.223 1.223 26 H -0.193 1.193 27 C -0.117 4.117 28 H 0.101 0.899 29 C 0.012 3.988 30 N -0.153 5.153 31 H 0.282 0.718 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.204 0.796 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.327 9.662 -4.650 28.427 hybrid contribution 2.246 -1.632 0.250 2.788 sum -24.081 8.030 -4.399 25.763 Atomic orbital electron populations 1.20596 0.80397 1.06369 1.05711 1.24388 0.97556 0.80768 0.98402 1.70114 1.01306 1.29976 1.23410 1.21290 0.93944 0.90690 0.99227 1.20269 0.92603 0.97420 1.03182 1.20445 0.84323 0.94821 1.22335 1.16828 0.87203 0.80390 0.76475 1.90812 1.28137 1.73001 1.52715 1.49121 1.10983 1.04456 1.70734 1.22591 0.85753 0.92400 1.01619 1.22104 0.95278 0.94215 0.99127 0.89862 1.21327 0.97781 0.91279 1.02512 1.21484 0.94360 0.99232 0.99582 1.21802 0.96406 0.98427 1.00287 1.19737 0.85240 0.92744 0.94019 0.94696 1.42590 1.09365 1.76546 1.08961 1.19559 0.91126 1.32507 0.93420 0.90896 1.25488 1.00910 1.03831 0.96549 1.69808 1.27474 1.56395 1.08321 0.85243 0.79883 0.77768 0.77525 1.21934 1.22270 1.19284 1.21969 0.96904 0.92199 1.00605 0.89911 1.21345 0.88847 0.88227 1.00392 1.43598 1.04474 1.11347 1.55832 0.71777 0.87853 0.88177 0.87199 0.90431 0.89808 0.90977 0.88080 0.88327 0.90508 0.87963 0.90451 0.91986 0.93610 0.94273 0.79645 0.94192 0.93689 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.25 4.15 8.12 138.20 1.12 5.27 16 3 N -0.53 -12.81 11.20 -175.57 -1.97 -14.78 16 4 C 0.08 2.30 7.14 41.97 0.30 2.60 16 5 C -0.08 -2.02 9.95 71.24 0.71 -1.32 16 6 C -0.10 -2.73 6.84 40.01 0.27 -2.45 16 7 C 0.60 19.43 7.82 86.47 0.68 20.11 16 8 O -0.57 -23.17 15.15 -4.30 -0.07 -23.24 16 9 N -0.62 -17.32 3.38 -817.02 -2.76 -20.08 16 10 C 0.10 1.59 4.95 86.06 0.43 2.01 16 11 C -0.09 -1.66 2.48 -10.25 -0.03 -1.69 16 12 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 13 C -0.09 -1.26 5.75 30.42 0.17 -1.09 16 14 C -0.11 -2.13 5.84 30.71 0.18 -1.95 16 15 C -0.13 -3.98 5.40 30.07 0.16 -3.82 16 16 C 0.19 6.99 2.41 44.12 0.11 7.10 16 17 H 0.03 1.36 8.01 -2.39 -0.02 1.34 16 18 N -0.74 -36.21 5.06 -327.13 -1.66 -37.87 16 19 C -0.23 -12.94 9.95 84.03 0.84 -12.11 16 20 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 22 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 23 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 C -0.10 -2.84 1.81 -10.62 -0.02 -2.86 16 28 H 0.08 2.39 7.97 -2.39 -0.02 2.37 16 29 C 0.13 4.66 6.52 85.82 0.56 5.22 16 30 N -0.54 -8.92 5.45 -176.11 -0.96 -9.88 16 31 H 0.44 4.07 5.53 -92.71 -0.51 3.56 16 32 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.18 6.37 -2.39 -0.02 2.16 16 38 H 0.10 1.15 7.94 -2.38 -0.02 1.13 16 39 H 0.10 1.09 6.22 -2.39 -0.01 1.08 16 40 H 0.08 1.00 8.00 -2.39 -0.02 0.98 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.37 19.93 7.81 -92.71 -0.72 19.20 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.04 1.83 8.08 -2.38 -0.02 1.81 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -79.43 384.85 1.33 -78.10 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.27 Total: 27.09 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.69 Total: 11.49 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -7.06 Total: -142.40 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.07 Total: -23.24 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.43 1.33 -78.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992814372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.400 kcal (2) G-P(sol) polarization free energy of solvation -79.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds