Wall clock time and date at job start Tue Mar 31 2020 18:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35365 * 127.24993 * 2 1 4 4 N 1.35033 * 107.22787 * 180.09303 * 3 2 1 5 5 C 1.46507 * 124.87945 * 179.89400 * 4 3 2 6 6 N 1.28457 * 110.23214 * 359.63361 * 4 3 2 7 7 C 1.31807 * 110.07595 * 0.22756 * 6 4 3 8 8 C 1.47714 * 126.52204 * 180.02562 * 7 6 4 9 9 O 1.21571 * 120.00219 * 186.06775 * 8 7 6 10 10 N 1.34774 * 119.99464 * 6.06403 * 8 7 6 11 11 C 1.47069 * 120.84941 * 6.15483 * 10 8 7 12 12 C 1.53591 * 108.79262 * 126.52786 * 11 10 8 13 13 C 1.53141 * 109.54481 * 54.24267 * 12 11 10 14 14 C 1.52817 * 109.26177 * 299.01200 * 13 12 11 15 15 H 1.09000 * 109.47010 * 302.00585 * 14 13 12 16 16 C 1.53029 * 110.51814 * 181.59239 * 14 13 12 17 17 N 1.47069 * 108.50925 * 184.77118 * 16 14 13 18 18 C 1.36939 * 120.47546 * 233.21931 * 17 16 14 19 19 H 1.07999 * 119.99892 * 151.14937 * 18 17 16 20 20 C 1.38803 * 119.99852 * 331.14968 * 18 17 16 21 21 N 1.31618 * 120.00464 * 342.25870 * 20 18 17 22 22 Si 1.86800 * 119.99945 * 162.26423 * 20 18 17 23 23 H 1.48497 * 109.47253 * 59.99701 * 22 20 18 24 24 H 1.48495 * 109.47116 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47104 * 299.99557 * 22 20 18 26 26 C 1.46869 * 119.05227 * 53.19311 * 17 16 14 27 27 C 1.53312 * 109.09953 * 307.34818 * 26 17 16 28 28 C 1.46724 * 120.84163 * 186.43880 * 10 8 7 29 29 H 1.08998 * 109.53476 * 114.79364 * 28 10 8 30 30 H 1.09001 * 109.47362 * 270.30683 * 1 2 3 31 31 H 1.09002 * 109.46985 * 30.31026 * 1 2 3 32 32 H 1.08998 * 109.46995 * 150.30763 * 1 2 3 33 33 H 1.08003 * 126.37929 * 359.96966 * 3 2 1 34 34 H 1.08997 * 109.47296 * 269.72318 * 5 4 3 35 35 H 1.09002 * 109.46634 * 149.72504 * 5 4 3 36 36 H 1.09001 * 109.46999 * 29.72411 * 5 4 3 37 37 H 1.08999 * 109.54228 * 246.44414 * 11 10 8 38 38 H 1.08997 * 109.53785 * 6.70430 * 11 10 8 39 39 H 1.09002 * 109.59584 * 294.14752 * 12 11 10 40 40 H 1.09011 * 109.37283 * 174.19731 * 12 11 10 41 41 H 1.09007 * 109.50477 * 179.07466 * 13 12 11 42 42 H 1.08992 * 109.50654 * 58.95312 * 13 12 11 43 43 H 1.09004 * 109.71522 * 64.94651 * 16 14 13 44 44 H 1.09004 * 109.53802 * 304.49708 * 16 14 13 45 45 H 0.97001 * 120.00783 * 180.02562 * 21 20 18 46 46 H 1.08992 * 109.53317 * 187.46014 * 26 17 16 47 47 H 1.08997 * 109.53011 * 67.23120 * 26 17 16 48 48 H 1.08998 * 109.56099 * 294.25951 * 27 26 17 49 49 H 1.09003 * 109.64574 * 173.99733 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0021 5 6 4.7938 1.4576 -0.0050 6 7 3.5998 -0.6694 0.0043 7 6 2.3635 -1.1264 0.0060 8 6 1.9505 -2.5446 0.0135 9 8 0.7755 -2.8361 -0.0970 10 7 2.8765 -3.5153 0.1426 11 6 4.2839 -3.1840 0.4117 12 6 4.7467 -3.9613 1.6529 13 6 4.4747 -5.4550 1.4529 14 6 2.9736 -5.6738 1.2683 15 1 2.4407 -5.2890 2.1378 16 6 2.6648 -7.1637 1.1051 17 7 1.2306 -7.3144 0.8166 18 6 0.4541 -8.1511 1.5731 19 1 -0.5981 -7.9435 1.7003 20 6 1.0195 -9.2660 2.1766 21 7 2.1821 -9.7212 1.7602 22 14 0.1302 -10.1204 3.5796 23 1 -1.1934 -10.6005 3.1074 24 1 0.9381 -11.2752 4.0474 25 1 -0.0608 -9.1644 4.6998 26 6 0.6427 -6.5543 -0.2941 27 6 0.9912 -5.0707 -0.1265 28 6 2.5072 -4.9293 0.0123 29 1 2.9947 -5.3540 -0.8652 30 1 -0.3634 0.0055 1.0276 31 1 -0.3633 0.8872 -0.5187 32 1 -0.3633 -0.8927 -0.5090 33 1 2.0220 2.1137 -0.0005 34 1 5.0919 1.6617 -1.0334 35 1 5.6023 0.9407 0.5119 36 1 4.5788 2.3970 0.5042 37 1 4.8949 -3.4643 -0.4464 38 1 4.3780 -2.1135 0.5938 39 1 4.2034 -3.6077 2.5293 40 1 5.8151 -3.8036 1.8009 41 1 4.8183 -6.0078 2.3273 42 1 5.0053 -5.8062 0.5680 43 1 2.9119 -7.6935 2.0251 44 1 3.2500 -7.5690 0.2796 45 1 2.5771 -10.5005 2.1816 46 1 -0.4402 -6.6773 -0.2871 47 1 1.0460 -6.9189 -1.2389 48 1 0.5049 -4.6803 0.7674 49 1 0.6513 -4.5136 -0.9996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021588835.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:35 Heat of formation + Delta-G solvation = 69.119491 kcal Electronic energy + Delta-G solvation = -30252.542939 eV Core-core repulsion = 26409.949687 eV Total energy + Delta-G solvation = -3842.593253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.65664 -41.52146 -39.04286 -37.35293 -34.96297 -34.41170 -34.23375 -32.80354 -31.83791 -30.86078 -29.03874 -27.82449 -27.17710 -26.06163 -24.33391 -23.89311 -23.09096 -21.77195 -21.35311 -21.00609 -20.05456 -18.70804 -17.93988 -17.35031 -17.25541 -16.99875 -16.64797 -16.25675 -15.57557 -15.54821 -15.34362 -15.14593 -14.90415 -14.41498 -14.34490 -14.14720 -14.02695 -13.85076 -13.71442 -13.57269 -13.27215 -13.24284 -13.17671 -13.00716 -12.82306 -12.65552 -12.50306 -12.27667 -12.16827 -12.06794 -11.80928 -11.69584 -11.53820 -11.19866 -10.90689 -10.58713 -10.26718 -10.14143 -9.69644 -9.44925 -8.65537 -7.88553 -5.34531 0.54829 1.19611 1.44420 1.47237 1.54442 1.60146 2.07873 2.38390 2.50046 3.23967 3.32370 3.60877 3.72588 3.86161 3.93334 3.98364 4.07403 4.13757 4.28104 4.35231 4.40680 4.45880 4.47252 4.52799 4.61450 4.63806 4.70705 4.75886 4.82674 4.86000 4.90844 4.93478 4.93694 5.01462 5.05576 5.09908 5.18495 5.23682 5.27440 5.36018 5.43912 5.49081 5.56524 5.63109 5.70380 5.75298 6.01733 6.37733 6.48093 6.91222 7.13319 7.24356 7.83172 8.36327 9.17309 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003284 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.875512 B = 8522.951660 C = 9300.057143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.175 4.175 3 C -0.001 4.001 4 N -0.280 5.280 5 C 0.075 3.925 6 N -0.271 5.271 7 C -0.043 4.043 8 C 0.587 3.413 9 O -0.554 6.554 10 N -0.597 5.597 11 C 0.087 3.913 12 C -0.121 4.121 13 C -0.108 4.108 14 C -0.106 4.106 15 H 0.040 0.960 16 C 0.195 3.805 17 N -0.612 5.612 18 C -0.270 4.270 19 H 0.058 0.942 20 C -0.045 4.045 21 N -0.930 5.930 22 Si 0.967 3.033 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.281 1.281 26 C 0.138 3.862 27 C -0.093 4.093 28 C 0.165 3.835 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.226 0.774 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.003 0.997 45 H 0.252 0.748 46 H 0.049 0.951 47 H 0.015 0.985 48 H 0.046 0.954 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 28.216 -3.574 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.185 4.185 3 C -0.144 4.144 4 N -0.067 5.067 5 C -0.063 4.063 6 N -0.109 5.109 7 C -0.201 4.201 8 C 0.375 3.625 9 O -0.432 6.432 10 N -0.328 5.328 11 C -0.035 4.035 12 C -0.159 4.159 13 C -0.146 4.146 14 C -0.127 4.127 15 H 0.059 0.941 16 C 0.069 3.931 17 N -0.335 5.335 18 C -0.400 4.400 19 H 0.076 0.924 20 C -0.241 4.241 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.207 1.207 26 C 0.012 3.988 27 C -0.133 4.133 28 C 0.062 3.938 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.033 0.967 48 H 0.065 0.935 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.050 27.666 -3.602 29.654 hybrid contribution -1.297 -1.047 0.674 1.798 sum 8.753 26.619 -2.928 28.173 Atomic orbital electron populations 1.20118 0.88090 1.03004 1.02086 1.20664 0.98084 0.90948 1.08812 1.23165 0.82883 1.01455 1.06922 1.45984 1.08693 1.03364 1.48650 1.22652 0.83250 0.94304 1.06107 1.73186 1.21836 0.95056 1.20782 1.21812 0.90851 0.94310 1.13082 1.17521 0.84946 0.83620 0.76379 1.90793 1.18435 1.82127 1.51832 1.48153 1.09924 1.05329 1.69400 1.22714 0.79235 1.03876 0.97672 1.21939 1.02579 0.93957 0.97416 1.21465 0.93843 0.97088 1.02209 1.21974 0.96932 0.97255 0.96529 0.94098 1.20503 0.83304 0.90812 0.98513 1.44352 1.06235 1.49300 1.33614 1.19430 0.93507 1.02471 1.24629 0.92378 1.25778 0.98661 0.96758 1.02882 1.70171 1.20246 1.24852 1.42290 0.85361 0.78024 0.77518 0.79669 1.20108 1.21360 1.20721 1.21214 0.96837 0.91130 0.89617 1.22164 0.93941 0.95112 1.02046 1.21047 0.95961 0.79593 0.97234 0.91615 0.91944 0.89209 0.92763 0.75796 0.88111 0.88060 0.85367 0.90905 0.84837 0.93095 0.87827 0.91891 0.91251 0.92662 0.97916 0.93891 0.93217 0.96733 0.93518 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.99 71.24 0.71 -0.97 16 2 C -0.17 -4.11 6.25 -19.72 -0.12 -4.23 16 3 C 0.00 -0.01 11.40 83.54 0.95 0.94 16 4 N -0.28 -4.12 3.70 -369.43 -1.37 -5.49 16 5 C 0.07 0.25 11.31 127.77 1.44 1.69 16 6 N -0.27 -6.22 8.44 -48.17 -0.41 -6.63 16 7 C -0.04 -1.25 6.85 42.46 0.29 -0.96 16 8 C 0.59 21.12 7.63 86.75 0.66 21.79 16 9 O -0.55 -22.88 10.63 -3.94 -0.04 -22.92 16 10 N -0.60 -20.50 2.96 -797.96 -2.37 -22.87 16 11 C 0.09 2.32 6.16 86.47 0.53 2.86 16 12 C -0.12 -3.13 6.08 30.84 0.19 -2.95 16 13 C -0.11 -3.51 5.25 30.58 0.16 -3.35 16 14 C -0.11 -4.42 2.21 -10.75 -0.02 -4.44 16 15 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.19 10.00 4.63 86.28 0.40 10.40 16 17 N -0.61 -33.90 3.00 -698.97 -2.10 -35.99 16 18 C -0.27 -16.11 9.55 84.03 0.80 -15.31 16 19 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 20 C -0.04 -2.64 4.88 84.86 0.41 -2.22 16 21 N -0.93 -56.74 11.30 21.65 0.24 -56.50 16 22 Si 0.97 47.02 29.59 68.60 2.03 49.05 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 26 C 0.14 6.72 6.50 86.41 0.56 7.28 16 27 C -0.09 -4.10 3.80 30.66 0.12 -3.99 16 28 C 0.16 6.51 2.63 45.00 0.12 6.63 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.56 6.62 -2.39 -0.02 1.55 16 33 H 0.23 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.13 -0.39 8.13 -2.39 -0.02 -0.41 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.13 3.29 4.14 -29.49 -0.12 3.17 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 3.16 6.16 -2.38 -0.01 3.14 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.05 2.41 7.93 -2.39 -0.02 2.39 16 47 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.05 2.27 7.10 -2.39 -0.02 2.25 16 49 H 0.07 3.24 6.50 -2.39 -0.02 3.22 16 Total: -1.00 -78.96 372.73 4.04 -74.93 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.83 Total: 13.26 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 7.21 Total: 13.16 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.99 Total: -127.48 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.96 4.04 -74.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021588835.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.049 kcal (2) G-P(sol) polarization free energy of solvation -78.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds