Wall clock time and date at job start Tue Mar 31 2020 17:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34668 * 126.58894 * 2 1 4 4 N 1.34124 * 108.02032 * 180.28423 * 3 2 1 5 5 C 1.30501 * 109.25593 * 359.73233 * 4 3 2 6 6 N 1.35043 * 108.69953 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.40063 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47189 * 265.02505 * 7 6 5 9 9 O 1.21279 * 119.99829 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.97438 * 8 7 6 11 11 C 1.46951 * 120.83947 * 359.72403 * 10 8 7 12 12 C 1.52668 * 109.27930 * 233.95781 * 11 10 8 13 13 C 1.53114 * 109.55490 * 306.17197 * 12 11 10 14 14 C 1.52859 * 109.34370 * 60.51316 * 13 12 11 15 15 H 1.09002 * 108.58442 * 57.11704 * 14 13 12 16 16 C 1.52852 * 109.61952 * 177.18319 * 14 13 12 17 17 N 1.46890 * 109.75573 * 68.09921 * 16 14 13 18 18 C 1.36929 * 120.77492 * 232.87407 * 17 16 14 19 19 H 1.08003 * 120.00305 * 152.95946 * 18 17 16 20 20 C 1.38812 * 119.99678 * 332.96341 * 18 17 16 21 21 N 1.31627 * 120.00241 * 159.71552 * 20 18 17 22 22 Si 1.86804 * 120.00251 * 339.71410 * 20 18 17 23 23 H 1.48493 * 109.46861 * 94.83704 * 22 20 18 24 24 H 1.48493 * 109.47165 * 214.84239 * 22 20 18 25 25 H 1.48506 * 109.46470 * 334.84075 * 22 20 18 26 26 C 1.46976 * 118.45885 * 52.89218 * 17 16 14 27 27 C 1.53108 * 108.61490 * 305.69375 * 26 17 16 28 28 C 1.47297 * 120.84400 * 179.97438 * 10 8 7 29 29 H 1.09000 * 110.07106 * 4.93700 * 28 10 8 30 30 H 1.08999 * 109.47250 * 270.15936 * 1 2 3 31 31 H 1.08996 * 109.47267 * 30.16211 * 1 2 3 32 32 H 1.09007 * 109.47312 * 150.16476 * 1 2 3 33 33 H 1.07997 * 125.99136 * 359.97438 * 3 2 1 34 34 H 1.07999 * 125.65378 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46700 * 25.02210 * 7 6 5 36 36 H 1.08996 * 109.47423 * 145.02193 * 7 6 5 37 37 H 1.08997 * 109.54475 * 353.87415 * 11 10 8 38 38 H 1.08999 * 109.54398 * 114.15015 * 11 10 8 39 39 H 1.09003 * 109.54321 * 186.07906 * 12 11 10 40 40 H 1.08997 * 109.32066 * 66.13128 * 12 11 10 41 41 H 1.09006 * 109.49730 * 300.55724 * 13 12 11 42 42 H 1.08993 * 109.49683 * 180.47749 * 13 12 11 43 43 H 1.08995 * 109.59600 * 307.79333 * 16 14 13 44 44 H 1.09010 * 108.93015 * 187.99203 * 16 14 13 45 45 H 0.96997 * 120.00002 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.61433 * 185.95885 * 26 17 16 47 47 H 1.08999 * 109.61141 * 65.42899 * 26 17 16 48 48 H 1.09000 * 109.45260 * 295.31584 * 27 26 17 49 49 H 1.09003 * 109.44703 * 175.38060 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6542 -0.0063 5 6 3.5968 -0.6507 -0.0045 6 7 2.3230 -1.0990 0.0026 7 6 1.8943 -2.4999 0.0062 8 6 1.6222 -2.9457 -1.4074 9 8 1.7712 -2.1695 -2.3272 10 7 1.2133 -4.2069 -1.6493 11 6 1.0326 -5.1644 -0.5493 12 6 1.8427 -6.4253 -0.8403 13 6 1.4675 -6.9679 -2.2221 14 6 1.7849 -5.9143 -3.2831 15 1 2.8417 -5.6571 -3.2121 16 6 1.4782 -6.4755 -4.6714 17 7 0.0286 -6.6562 -4.8249 18 6 -0.4894 -7.8605 -5.2202 19 1 -1.4908 -8.1399 -4.9276 20 6 0.2727 -8.7224 -5.9970 21 7 -0.0290 -10.0025 -6.0488 22 14 1.7265 -8.0654 -6.9688 23 1 2.9708 -8.2414 -6.1777 24 1 1.8438 -8.8100 -8.2482 25 1 1.5205 -6.6224 -7.2528 26 6 -0.8531 -5.5142 -4.5446 27 6 -0.5486 -4.9956 -3.1365 28 6 0.9415 -4.6622 -3.0236 29 1 1.2044 -3.8799 -3.7356 30 1 -0.3634 0.0029 1.0276 31 1 -0.3633 0.8885 -0.5163 32 1 -0.3634 -0.8915 -0.5113 33 1 1.9864 2.1117 -0.0004 34 1 4.4818 -1.2696 -0.0088 35 1 2.6808 -3.1193 0.4375 36 1 0.9859 -2.6004 0.6001 37 1 1.3780 -4.7180 0.3831 38 1 -0.0223 -5.4245 -0.4619 39 1 1.6280 -7.1795 -0.0832 40 1 2.9054 -6.1836 -0.8212 41 1 0.4023 -7.1983 -2.2455 42 1 2.0402 -7.8728 -2.4253 43 1 1.9800 -7.4349 -4.7969 44 1 1.8394 -5.7744 -5.4239 45 1 0.5033 -10.6047 -6.5919 46 1 -1.8939 -5.8332 -4.5998 47 1 -0.6709 -4.7239 -5.2728 48 1 -0.8060 -5.7609 -2.4043 49 1 -1.1368 -4.0981 -2.9452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021634526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:44 Heat of formation + Delta-G solvation = 59.221125 kcal Electronic energy + Delta-G solvation = -30166.487091 eV Core-core repulsion = 26323.464613 eV Total energy + Delta-G solvation = -3843.022478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.31188 -40.61201 -38.43150 -35.95356 -34.26505 -32.96124 -32.64455 -32.09857 -30.76217 -30.26348 -28.10979 -26.58493 -25.82569 -24.90070 -22.88543 -22.50341 -21.69049 -21.46351 -20.62320 -19.41338 -18.13848 -17.74583 -17.31213 -16.73613 -15.96563 -15.70592 -15.46997 -15.04666 -14.71334 -14.49057 -14.19899 -14.05663 -13.87174 -13.79877 -13.25735 -13.20804 -13.13367 -12.97231 -12.90154 -12.69114 -12.55000 -12.49739 -12.38174 -11.98216 -11.85922 -11.16808 -10.93486 -10.73027 -10.67409 -10.55619 -10.41899 -10.20905 -10.08031 -9.97433 -9.77835 -9.54674 -9.46607 -8.72592 -8.60246 -8.40988 -7.06121 -6.01792 -3.38150 1.77983 2.31549 2.39937 2.90778 3.08843 3.26478 3.44929 3.47263 4.09247 4.26476 4.46453 4.47689 4.54494 4.58080 4.64543 4.83500 4.88962 4.94069 4.95092 5.11797 5.23005 5.25790 5.28087 5.28783 5.39816 5.47869 5.59626 5.60150 5.63886 5.73206 5.82737 5.88920 6.01673 6.09630 6.15292 6.18838 6.19522 6.30047 6.49277 6.51268 6.54811 6.58625 6.62520 6.69582 6.84846 6.98037 7.27163 7.87200 7.91964 7.95316 8.25188 8.85581 9.64608 10.01884 11.13926 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.003077 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.990729 B = 9096.189857 C = 9161.193611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.013 4.013 3 C -0.031 4.031 4 N -0.492 5.492 5 C 0.188 3.812 6 N -0.442 5.442 7 C 0.086 3.914 8 C 0.495 3.505 9 O -0.523 6.523 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.135 4.135 13 C -0.108 4.108 14 C -0.109 4.109 15 H 0.062 0.938 16 C 0.134 3.866 17 N -0.601 5.601 18 C -0.258 4.258 19 H 0.087 0.913 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.878 3.122 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.269 1.269 26 C 0.150 3.850 27 C -0.141 4.141 28 C 0.156 3.844 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.167 0.833 34 H 0.202 0.798 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.026 0.974 45 H 0.263 0.737 46 H 0.068 0.932 47 H 0.025 0.975 48 H 0.070 0.930 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 13.007 17.090 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C -0.178 4.178 4 N -0.209 5.209 5 C -0.094 4.094 6 N -0.126 5.126 7 C -0.041 4.041 8 C 0.280 3.720 9 O -0.399 6.399 10 N -0.334 5.334 11 C -0.018 4.018 12 C -0.173 4.173 13 C -0.146 4.146 14 C -0.130 4.130 15 H 0.080 0.920 16 C 0.007 3.993 17 N -0.325 5.325 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.174 4.174 21 N -0.550 5.550 22 Si 0.709 3.291 23 H -0.217 1.217 24 H -0.231 1.231 25 H -0.194 1.194 26 C 0.024 3.976 27 C -0.181 4.181 28 C 0.054 3.946 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.185 0.815 34 H 0.218 0.782 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.614 13.638 16.515 21.577 hybrid contribution 0.313 -0.519 -0.601 0.853 sum 2.927 13.119 15.914 20.831 Atomic orbital electron populations 1.20207 0.87391 1.03631 1.02255 1.21211 0.94515 0.86689 1.10287 1.21989 0.88408 0.98313 1.09096 1.70251 1.22462 1.08736 1.19482 1.24848 0.86918 0.91846 1.05765 1.44905 1.07472 1.05318 1.54857 1.21744 1.04244 0.81347 0.96775 1.20601 0.78175 0.82392 0.90825 1.90787 1.51315 1.52472 1.45335 1.48525 1.65846 1.10035 1.09031 1.21697 1.01293 0.90339 0.88513 1.21882 0.99759 0.96413 0.99267 1.21493 1.03628 0.97704 0.91763 1.21876 0.98240 0.94579 0.98303 0.91950 1.21252 0.86355 0.99362 0.92305 1.44324 1.00185 1.09252 1.78727 1.18876 1.01934 0.91106 1.26701 0.89584 1.25253 0.98222 0.95440 0.98437 1.69824 1.41299 1.02120 1.41773 0.87022 0.82710 0.79286 0.80095 1.21737 1.23100 1.19390 1.20886 0.95221 0.89631 0.91906 1.22376 0.94287 1.00415 1.01005 1.21349 0.95651 0.96342 0.81269 0.88694 0.91048 0.89876 0.91895 0.81533 0.78155 0.85948 0.86438 0.90694 0.90621 0.90662 0.92049 0.89927 0.91611 0.90571 0.95655 0.92736 0.91395 0.95711 0.91159 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.08 36.01 0.36 -0.27 16 2 C -0.01 -0.15 6.95 -81.60 -0.57 -0.71 16 3 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 4 N -0.49 -6.85 11.25 -14.67 -0.17 -7.01 16 5 C 0.19 2.20 12.56 -90.37 -1.13 1.07 16 6 N -0.44 -4.80 2.24 -115.27 -0.26 -5.06 16 7 C 0.09 0.70 4.63 -5.19 -0.02 0.68 16 8 C 0.49 6.09 7.78 -10.99 -0.09 6.00 16 9 O -0.52 -8.94 15.88 5.56 0.09 -8.86 16 10 N -0.60 -7.11 2.66 -165.18 -0.44 -7.55 16 11 C 0.10 0.91 5.83 -3.97 -0.02 0.88 16 12 C -0.14 -1.37 6.06 -26.84 -0.16 -1.53 16 13 C -0.11 -1.60 4.84 -26.74 -0.13 -1.73 16 14 C -0.11 -1.78 2.51 -90.67 -0.23 -2.00 16 15 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 16 C 0.13 2.76 3.54 -3.91 -0.01 2.75 16 17 N -0.60 -13.29 2.45 -172.57 -0.42 -13.72 16 18 C -0.26 -6.79 10.06 -15.06 -0.15 -6.94 16 19 H 0.09 2.42 8.06 -52.48 -0.42 2.00 16 20 C 0.03 0.71 5.24 -17.43 -0.09 0.62 16 21 N -0.91 -26.85 13.97 55.49 0.78 -26.07 16 22 Si 0.88 21.82 24.35 -169.99 -4.14 17.68 16 23 H -0.29 -6.95 6.70 56.52 0.38 -6.57 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.27 -6.63 6.44 56.52 0.36 -6.26 16 26 C 0.15 2.77 6.52 -3.73 -0.02 2.75 16 27 C -0.14 -2.13 5.05 -26.62 -0.13 -2.26 16 28 C 0.16 2.36 2.61 -67.34 -0.18 2.18 16 29 H 0.10 1.67 7.06 -51.93 -0.37 1.30 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.57 7.96 -51.92 -0.41 0.15 16 33 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.12 0.65 7.69 -51.93 -0.40 0.25 16 36 H 0.12 0.67 7.84 -51.93 -0.41 0.27 16 37 H 0.07 0.40 5.96 -51.93 -0.31 0.09 16 38 H 0.08 0.65 7.28 -51.93 -0.38 0.27 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.38 6.22 -51.93 -0.32 1.05 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.73 4.49 -51.93 -0.23 1.50 16 44 H 0.03 0.54 6.96 -51.92 -0.36 0.18 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 1.05 5.44 -51.93 -0.28 0.76 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -34.33 371.53 -9.49 -43.81 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.73 Total: 0.29 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.79 Total: 0.88 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.51 Total: -59.41 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.33 -9.49 -43.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021634526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.031 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds