Wall clock time and date at job start Tue Mar 31 2020 17:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34668 * 126.58894 * 2 1 4 4 N 1.34124 * 108.02032 * 180.28423 * 3 2 1 5 5 C 1.30501 * 109.25593 * 359.73233 * 4 3 2 6 6 N 1.35043 * 108.69953 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.40063 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47189 * 265.02505 * 7 6 5 9 9 O 1.21279 * 119.99829 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.97438 * 8 7 6 11 11 C 1.46951 * 120.83947 * 359.72403 * 10 8 7 12 12 C 1.52668 * 109.27930 * 233.95781 * 11 10 8 13 13 C 1.53114 * 109.55490 * 306.17197 * 12 11 10 14 14 C 1.52859 * 109.34370 * 60.51316 * 13 12 11 15 15 H 1.09002 * 108.58442 * 57.11704 * 14 13 12 16 16 C 1.52852 * 109.61952 * 177.18319 * 14 13 12 17 17 N 1.46890 * 109.75573 * 68.09921 * 16 14 13 18 18 C 1.36929 * 120.77492 * 232.87407 * 17 16 14 19 19 H 1.08003 * 120.00305 * 152.95946 * 18 17 16 20 20 C 1.38812 * 119.99678 * 332.96341 * 18 17 16 21 21 N 1.31627 * 120.00241 * 159.71552 * 20 18 17 22 22 Si 1.86804 * 120.00251 * 339.71410 * 20 18 17 23 23 H 1.48493 * 109.46861 * 94.83704 * 22 20 18 24 24 H 1.48493 * 109.47165 * 214.84239 * 22 20 18 25 25 H 1.48506 * 109.46470 * 334.84075 * 22 20 18 26 26 C 1.46976 * 118.45885 * 52.89218 * 17 16 14 27 27 C 1.53108 * 108.61490 * 305.69375 * 26 17 16 28 28 C 1.47297 * 120.84400 * 179.97438 * 10 8 7 29 29 H 1.09000 * 110.07106 * 4.93700 * 28 10 8 30 30 H 1.08999 * 109.47250 * 270.15936 * 1 2 3 31 31 H 1.08996 * 109.47267 * 30.16211 * 1 2 3 32 32 H 1.09007 * 109.47312 * 150.16476 * 1 2 3 33 33 H 1.07997 * 125.99136 * 359.97438 * 3 2 1 34 34 H 1.07999 * 125.65378 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46700 * 25.02210 * 7 6 5 36 36 H 1.08996 * 109.47423 * 145.02193 * 7 6 5 37 37 H 1.08997 * 109.54475 * 353.87415 * 11 10 8 38 38 H 1.08999 * 109.54398 * 114.15015 * 11 10 8 39 39 H 1.09003 * 109.54321 * 186.07906 * 12 11 10 40 40 H 1.08997 * 109.32066 * 66.13128 * 12 11 10 41 41 H 1.09006 * 109.49730 * 300.55724 * 13 12 11 42 42 H 1.08993 * 109.49683 * 180.47749 * 13 12 11 43 43 H 1.08995 * 109.59600 * 307.79333 * 16 14 13 44 44 H 1.09010 * 108.93015 * 187.99203 * 16 14 13 45 45 H 0.96997 * 120.00002 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.61433 * 185.95885 * 26 17 16 47 47 H 1.08999 * 109.61141 * 65.42899 * 26 17 16 48 48 H 1.09000 * 109.45260 * 295.31584 * 27 26 17 49 49 H 1.09003 * 109.44703 * 175.38060 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6542 -0.0063 5 6 3.5968 -0.6507 -0.0045 6 7 2.3230 -1.0990 0.0026 7 6 1.8943 -2.4999 0.0062 8 6 1.6222 -2.9457 -1.4074 9 8 1.7712 -2.1695 -2.3272 10 7 1.2133 -4.2069 -1.6493 11 6 1.0326 -5.1644 -0.5493 12 6 1.8427 -6.4253 -0.8403 13 6 1.4675 -6.9679 -2.2221 14 6 1.7849 -5.9143 -3.2831 15 1 2.8417 -5.6571 -3.2121 16 6 1.4782 -6.4755 -4.6714 17 7 0.0286 -6.6562 -4.8249 18 6 -0.4894 -7.8605 -5.2202 19 1 -1.4908 -8.1399 -4.9276 20 6 0.2727 -8.7224 -5.9970 21 7 -0.0290 -10.0025 -6.0488 22 14 1.7265 -8.0654 -6.9688 23 1 2.9708 -8.2414 -6.1777 24 1 1.8438 -8.8100 -8.2482 25 1 1.5205 -6.6224 -7.2528 26 6 -0.8531 -5.5142 -4.5446 27 6 -0.5486 -4.9956 -3.1365 28 6 0.9415 -4.6622 -3.0236 29 1 1.2044 -3.8799 -3.7356 30 1 -0.3634 0.0029 1.0276 31 1 -0.3633 0.8885 -0.5163 32 1 -0.3634 -0.8915 -0.5113 33 1 1.9864 2.1117 -0.0004 34 1 4.4818 -1.2696 -0.0088 35 1 2.6808 -3.1193 0.4375 36 1 0.9859 -2.6004 0.6001 37 1 1.3780 -4.7180 0.3831 38 1 -0.0223 -5.4245 -0.4619 39 1 1.6280 -7.1795 -0.0832 40 1 2.9054 -6.1836 -0.8212 41 1 0.4023 -7.1983 -2.2455 42 1 2.0402 -7.8728 -2.4253 43 1 1.9800 -7.4349 -4.7969 44 1 1.8394 -5.7744 -5.4239 45 1 0.5033 -10.6047 -6.5919 46 1 -1.8939 -5.8332 -4.5998 47 1 -0.6709 -4.7239 -5.2728 48 1 -0.8060 -5.7609 -2.4043 49 1 -1.1368 -4.0981 -2.9452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021634526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:43 Heat of formation + Delta-G solvation = 38.190212 kcal Electronic energy + Delta-G solvation = -30167.399060 eV Core-core repulsion = 26323.464613 eV Total energy + Delta-G solvation = -3843.934447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.10646 -41.68687 -39.64868 -37.29933 -35.13518 -34.37120 -34.07804 -32.84855 -32.33102 -31.58200 -29.01047 -27.30961 -27.22710 -26.27467 -24.35858 -23.67420 -22.87972 -22.41740 -21.65838 -20.37227 -19.49666 -18.65610 -18.53156 -17.94865 -17.35553 -16.81694 -16.62187 -16.15271 -15.97917 -15.68472 -15.42911 -15.30675 -15.03520 -14.69640 -14.41629 -14.40302 -14.23710 -14.05888 -13.93115 -13.82410 -13.60860 -13.55380 -13.29224 -13.21250 -13.13335 -12.64872 -12.50761 -12.22947 -12.00764 -11.88647 -11.86783 -11.50480 -11.40942 -11.33467 -11.06328 -10.93422 -10.76212 -10.38024 -9.66006 -9.21378 -8.96551 -8.18045 -5.48834 0.96647 1.24321 1.37973 1.43751 1.44993 1.66132 2.05308 2.23044 2.37833 3.03223 3.28271 3.32184 3.66648 3.73079 3.80853 3.85650 3.87320 3.89347 4.06065 4.09419 4.14280 4.25411 4.27231 4.33064 4.52487 4.54247 4.55115 4.61526 4.72365 4.74816 4.80692 4.81928 4.83704 4.85774 4.93600 5.00870 5.03913 5.08062 5.16328 5.28614 5.34289 5.42234 5.48546 5.61316 5.83119 5.85284 6.11679 6.20333 6.39482 6.88226 7.01981 7.12821 7.59745 8.01370 9.01581 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.003077 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.990729 B = 9096.189857 C = 9161.193611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.062 4.062 4 N -0.533 5.533 5 C 0.180 3.820 6 N -0.444 5.444 7 C 0.089 3.911 8 C 0.495 3.505 9 O -0.578 6.578 10 N -0.596 5.596 11 C 0.100 3.900 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.101 4.101 15 H 0.069 0.931 16 C 0.130 3.870 17 N -0.611 5.611 18 C -0.236 4.236 19 H 0.061 0.939 20 C -0.027 4.027 21 N -0.953 5.953 22 Si 0.932 3.068 23 H -0.279 1.279 24 H -0.312 1.312 25 H -0.268 1.268 26 C 0.144 3.856 27 C -0.125 4.125 28 C 0.163 3.837 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.176 0.824 34 H 0.228 0.772 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.016 0.984 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.077 0.923 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 14.161 20.464 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C -0.208 4.208 4 N -0.251 5.251 5 C -0.102 4.102 6 N -0.127 5.127 7 C -0.036 4.036 8 C 0.283 3.717 9 O -0.458 6.458 10 N -0.328 5.328 11 C -0.021 4.021 12 C -0.164 4.164 13 C -0.144 4.144 14 C -0.122 4.122 15 H 0.088 0.912 16 C 0.004 3.996 17 N -0.336 5.336 18 C -0.365 4.365 19 H 0.079 0.921 20 C -0.222 4.222 21 N -0.599 5.599 22 Si 0.763 3.237 23 H -0.206 1.206 24 H -0.241 1.241 25 H -0.193 1.193 26 C 0.019 3.981 27 C -0.164 4.164 28 C 0.060 3.940 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.244 0.756 35 H 0.181 0.819 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.042 0.958 48 H 0.096 0.904 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.924 14.820 19.940 25.016 hybrid contribution 0.151 -0.840 -1.654 1.861 sum 3.075 13.980 18.286 23.223 Atomic orbital electron populations 1.20281 0.85398 1.03594 1.03827 1.21665 0.95796 0.86645 1.08940 1.22332 0.88502 0.99511 1.10412 1.70193 1.23571 1.10367 1.20966 1.25401 0.88189 0.91676 1.04974 1.45061 1.07088 1.06290 1.54296 1.22056 1.07318 0.80279 0.93938 1.21324 0.76657 0.81601 0.92112 1.90780 1.53554 1.53944 1.47490 1.48448 1.65422 1.10756 1.08164 1.22025 1.01853 0.89152 0.89057 1.21838 1.00650 0.97632 0.96310 1.21427 1.01884 0.96585 0.94494 1.21715 0.98938 0.95633 0.95951 0.91218 1.21217 0.85110 0.98147 0.95109 1.44398 1.01327 1.09021 1.78806 1.18827 1.00659 0.92184 1.24880 0.92121 1.25739 1.00946 0.95565 0.99944 1.69928 1.43214 1.03245 1.43527 0.86136 0.80877 0.78299 0.78415 1.20572 1.24135 1.19336 1.21053 0.94523 0.88315 0.94249 1.22170 0.94716 1.01130 0.98430 1.20926 0.95075 0.94716 0.83324 0.91336 0.88546 0.89537 0.92290 0.80661 0.75595 0.81928 0.82889 0.85649 0.89854 0.88309 0.90998 0.92067 0.93728 0.92900 0.96638 0.93017 0.91564 0.95821 0.90432 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.08 71.24 0.72 -0.27 16 2 C -0.02 -0.32 6.95 40.95 0.28 -0.03 16 3 C -0.06 -1.47 11.79 83.52 0.98 -0.48 16 4 N -0.53 -14.34 11.25 -200.32 -2.25 -16.59 16 5 C 0.18 3.78 12.56 180.26 2.26 6.05 16 6 N -0.44 -8.13 2.24 -518.61 -1.16 -9.30 16 7 C 0.09 0.97 4.63 85.63 0.40 1.37 16 8 C 0.50 10.32 7.78 87.66 0.68 11.00 16 9 O -0.58 -18.74 15.88 -3.03 -0.05 -18.79 16 10 N -0.60 -11.75 2.66 -794.89 -2.11 -13.86 16 11 C 0.10 1.17 5.83 86.18 0.50 1.67 16 12 C -0.13 -1.99 6.06 30.52 0.19 -1.80 16 13 C -0.11 -2.95 4.84 30.59 0.15 -2.80 16 14 C -0.10 -3.20 2.51 -10.83 -0.03 -3.22 16 15 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 16 C 0.13 5.40 3.54 86.26 0.31 5.70 16 17 N -0.61 -27.33 2.45 -699.88 -1.72 -29.04 16 18 C -0.24 -12.74 10.06 84.03 0.85 -11.89 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 20 C -0.03 -1.53 5.24 84.86 0.44 -1.09 16 21 N -0.95 -58.29 13.97 21.65 0.30 -57.99 16 22 Si 0.93 46.48 24.35 68.60 1.67 48.15 16 23 H -0.28 -13.21 6.70 99.48 0.67 -12.55 16 24 H -0.31 -15.92 7.11 99.48 0.71 -15.22 16 25 H -0.27 -13.16 6.44 99.48 0.64 -12.51 16 26 C 0.14 5.28 6.52 86.32 0.56 5.84 16 27 C -0.12 -3.53 5.05 30.67 0.15 -3.38 16 28 C 0.16 4.64 2.61 44.94 0.12 4.76 16 29 H 0.07 2.36 7.06 -2.39 -0.02 2.34 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 0.86 7.96 -2.38 -0.02 0.84 16 33 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.16 0.53 7.69 -2.39 -0.02 0.51 16 36 H 0.15 0.67 7.84 -2.39 -0.02 0.65 16 37 H 0.13 0.31 5.96 -2.39 -0.01 0.29 16 38 H 0.08 0.95 7.28 -2.39 -0.02 0.93 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.96 6.22 -2.38 -0.01 1.95 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 2.44 4.49 -2.39 -0.01 2.42 16 44 H 0.02 0.68 6.96 -2.38 -0.02 0.66 16 45 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 47 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 2.12 5.44 -2.39 -0.01 2.10 16 49 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.49 371.53 4.09 -76.40 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.84 Total: 9.61 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 8.57 Total: 11.41 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.94 Total: -126.78 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.67 Total: 48.15 kcal Total: -80.49 4.09 -76.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021634526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.589 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds