Wall clock time and date at job start Tue Mar 31 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35358 * 127.24998 * 2 1 4 4 N 1.35038 * 107.23046 * 180.25764 * 3 2 1 5 5 H 0.96997 * 124.88366 * 179.72485 * 4 3 2 6 6 N 1.28473 * 110.22767 * 359.73384 * 4 3 2 7 7 C 1.31805 * 110.07315 * 359.97438 * 6 4 3 8 8 C 1.47711 * 126.51737 * 180.02562 * 7 6 4 9 9 O 1.21575 * 120.00154 * 186.50304 * 8 7 6 10 10 N 1.34773 * 119.99908 * 6.49619 * 8 7 6 11 11 C 1.46927 * 120.63325 * 7.13936 * 10 8 7 12 12 C 1.53193 * 108.77407 * 126.38829 * 11 10 8 13 13 C 1.53042 * 109.31008 * 54.64107 * 12 11 10 14 14 C 1.53042 * 109.53813 * 298.63088 * 13 12 11 15 15 C 1.46932 * 120.62974 * 187.14131 * 10 8 7 16 16 H 1.09002 * 109.70344 * 113.75555 * 15 10 8 17 17 C 1.52995 * 109.58579 * 353.39786 * 15 10 8 18 18 H 1.09001 * 110.88428 * 313.46442 * 17 15 10 19 19 C 1.55155 * 111.04076 * 77.37305 * 17 15 10 20 20 C 1.54323 * 102.94439 * 153.58966 * 19 17 15 21 21 N 1.47021 * 107.27095 * 337.80626 * 20 19 17 22 22 C 1.36931 * 125.65027 * 179.20700 * 21 20 19 23 23 H 1.08002 * 120.00585 * 179.69266 * 22 21 20 24 24 C 1.38821 * 119.99938 * 359.69086 * 22 21 20 25 25 N 1.31619 * 119.99807 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00021 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47360 * 89.99809 * 26 24 22 28 28 H 1.48498 * 109.46910 * 209.99798 * 26 24 22 29 29 H 1.48499 * 109.47301 * 329.99750 * 26 24 22 30 30 C 1.47427 * 108.70223 * 358.94348 * 21 20 19 31 31 H 1.09003 * 109.47026 * 270.18278 * 1 2 3 32 32 H 1.08998 * 109.46688 * 30.18732 * 1 2 3 33 33 H 1.09004 * 109.47108 * 150.18484 * 1 2 3 34 34 H 1.08002 * 126.38788 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.58122 * 6.60705 * 11 10 8 36 36 H 1.09000 * 109.70642 * 246.25264 * 11 10 8 37 37 H 1.09000 * 109.49960 * 294.68642 * 12 11 10 38 38 H 1.09008 * 109.49436 * 174.59132 * 12 11 10 39 39 H 1.08998 * 109.45575 * 178.61163 * 13 12 11 40 40 H 1.09000 * 109.46038 * 58.65501 * 13 12 11 41 41 H 1.09000 * 109.49543 * 301.41639 * 14 13 12 42 42 H 1.08992 * 109.52155 * 181.33670 * 14 13 12 43 43 H 1.09007 * 110.71869 * 271.95379 * 19 17 15 44 44 H 1.09000 * 110.72140 * 35.04493 * 19 17 15 45 45 H 1.08999 * 109.88236 * 218.38884 * 20 19 17 46 46 H 1.09000 * 109.88263 * 97.22362 * 20 19 17 47 47 H 0.96993 * 120.00015 * 180.02562 * 25 24 22 48 48 H 1.09002 * 110.36979 * 142.97006 * 30 21 20 49 49 H 1.09004 * 110.36369 * 265.29032 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0058 5 1 4.3887 1.1729 -0.0109 6 7 3.5998 -0.6695 -0.0037 7 6 2.3635 -1.1264 0.0040 8 6 1.9505 -2.5446 0.0092 9 8 0.7756 -2.8361 -0.1031 10 7 2.8763 -3.5156 0.1382 11 6 4.2767 -3.1806 0.4303 12 6 4.7240 -3.9664 1.6670 13 6 4.4690 -5.4580 1.4384 14 6 2.9714 -5.6953 1.2309 15 6 2.5042 -4.9292 -0.0107 16 1 2.9833 -5.3439 -0.8976 17 6 0.9849 -5.0482 -0.1454 18 1 0.4795 -4.4438 0.6079 19 6 0.5201 -4.6596 -1.5738 20 6 -0.7943 -5.4515 -1.7370 21 7 -0.7496 -6.5723 -0.7866 22 6 -1.7349 -7.5060 -0.6068 23 1 -1.6038 -8.2972 0.1166 24 6 -2.9026 -7.4357 -1.3543 25 7 -3.0627 -6.4712 -2.2355 26 14 -4.2470 -8.7090 -1.1086 27 1 -5.1859 -8.2411 -0.0576 28 1 -4.9857 -8.9010 -2.3824 29 1 -3.6382 -9.9973 -0.6905 30 6 0.5345 -6.5281 -0.0636 31 1 -0.3633 0.0033 1.0277 32 1 -0.3632 0.8883 -0.5167 33 1 -0.3633 -0.8917 -0.5110 34 1 2.0221 2.1137 -0.0004 35 1 4.3637 -2.1118 0.6253 36 1 4.9039 -3.4492 -0.4199 37 1 4.1587 -3.6296 2.5360 38 1 5.7878 -3.8011 1.8379 39 1 4.8091 -6.0217 2.3071 40 1 5.0149 -5.7885 0.5548 41 1 2.4227 -5.3423 2.1041 42 1 2.7873 -6.7605 1.0918 43 1 0.3353 -3.5874 -1.6408 44 1 1.2553 -4.9699 -2.3163 45 1 -0.8739 -5.8319 -2.7553 46 1 -1.6450 -4.8082 -1.5119 47 1 -3.8787 -6.4218 -2.7576 48 1 0.3951 -6.8254 0.9757 49 1 1.2656 -7.1745 -0.5492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039199607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:28 Heat of formation + Delta-G solvation = 78.502715 kcal Electronic energy + Delta-G solvation = -30403.781625 eV Core-core repulsion = 26561.595260 eV Total energy + Delta-G solvation = -3842.186366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.62661 -41.57747 -38.71128 -38.24463 -34.93724 -34.02292 -33.88798 -32.76783 -31.73367 -30.84610 -28.74874 -28.05112 -26.97712 -25.90433 -24.67152 -23.74754 -22.13550 -21.85227 -21.15471 -20.98381 -20.01881 -18.91690 -18.81561 -17.58464 -17.14249 -16.91889 -16.57517 -16.27019 -15.77191 -15.64778 -15.13706 -15.03320 -14.74515 -14.54170 -14.19577 -14.02513 -13.93765 -13.89115 -13.77409 -13.66751 -13.53933 -13.23737 -12.96313 -12.73942 -12.71041 -12.29768 -12.17544 -12.00403 -11.96772 -11.76816 -11.71393 -11.48409 -11.34360 -11.13086 -10.93892 -10.70230 -10.25367 -10.01834 -9.73718 -9.38181 -8.84911 -7.80920 -5.17785 0.58602 1.23280 1.43611 1.48004 1.56425 1.87739 2.28353 2.41977 2.51593 3.34261 3.40376 3.63810 3.75456 3.92489 4.00008 4.05580 4.15292 4.19368 4.24661 4.30874 4.39541 4.47975 4.53766 4.62593 4.63992 4.68779 4.78248 4.88534 4.92049 4.96637 4.99221 5.01627 5.07219 5.13794 5.17272 5.22551 5.24211 5.26299 5.33571 5.46318 5.49595 5.60500 5.60777 5.77650 5.79553 5.89822 6.22047 6.24232 6.53409 6.94928 7.12046 7.34997 7.81018 8.48859 9.29717 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.003722 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.318642 B = 7520.905662 C = 9108.188421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.179 4.179 3 C 0.011 3.989 4 N -0.366 5.366 5 H 0.465 0.535 6 N -0.265 5.265 7 C -0.034 4.034 8 C 0.574 3.426 9 O -0.532 6.532 10 N -0.595 5.595 11 C 0.085 3.915 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.166 3.834 16 H 0.073 0.927 17 C -0.072 4.072 18 H 0.084 0.916 19 C -0.117 4.117 20 C 0.196 3.804 21 N -0.628 5.628 22 C -0.244 4.244 23 H 0.084 0.916 24 C -0.073 4.073 25 N -0.954 5.954 26 Si 0.984 3.016 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.265 1.265 30 C 0.136 3.864 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.228 0.772 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.046 0.954 45 H -0.004 1.004 46 H -0.001 1.001 47 H 0.245 0.755 48 H 0.038 0.962 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.279 17.749 7.908 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.189 4.189 3 C -0.134 4.134 4 N -0.082 5.082 5 H 0.314 0.686 6 N -0.102 5.102 7 C -0.192 4.192 8 C 0.362 3.638 9 O -0.409 6.409 10 N -0.327 5.327 11 C -0.037 4.037 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.165 4.165 15 C 0.063 3.937 16 H 0.091 0.909 17 C -0.092 4.092 18 H 0.102 0.898 19 C -0.155 4.155 20 C 0.071 3.929 21 N -0.354 5.354 22 C -0.373 4.373 23 H 0.102 0.898 24 C -0.265 4.265 25 N -0.604 5.604 26 Si 0.812 3.188 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.190 1.190 30 C 0.011 3.989 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.244 0.756 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.015 0.985 46 H 0.018 0.982 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 22.571 17.162 7.764 29.399 hybrid contribution -1.738 -0.311 -0.353 1.801 sum 20.833 16.851 7.411 27.801 Atomic orbital electron populations 1.20107 0.88718 1.02771 1.02031 1.20615 0.97812 0.91393 1.09094 1.23194 0.83244 1.01379 1.05583 1.43485 1.09515 1.03922 1.51230 0.68648 1.73232 1.21568 0.94931 1.20499 1.21901 0.90648 0.94667 1.12016 1.17526 0.85274 0.83636 0.77355 1.90850 1.18887 1.81546 1.49592 1.47950 1.09934 1.05161 1.69688 1.22598 0.79326 1.03889 0.97932 1.21903 1.02502 0.94989 0.97126 1.21531 0.94137 0.96668 1.02874 1.21956 0.97700 1.00287 0.96555 1.21175 0.93445 0.80442 0.98636 0.90935 1.22541 0.94172 0.94356 0.98100 0.89772 1.23079 0.96122 1.00355 0.95922 1.20750 0.93550 0.87552 0.91021 1.44829 1.16167 1.30404 1.44016 1.19540 0.95278 1.04721 1.17791 0.89824 1.25772 1.00742 1.01080 0.98903 1.70273 1.26908 1.35065 1.28118 0.84996 0.78691 0.78597 0.76552 1.21249 1.21935 1.18985 1.21827 0.86902 0.95555 0.94640 0.91857 0.89548 0.93286 0.75565 0.85413 0.91067 0.92745 0.88267 0.90245 0.90949 0.92626 0.90443 0.89885 0.93583 0.98535 0.98239 0.94587 0.94381 0.95922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.93 9.99 71.24 0.71 -1.22 16 2 C -0.18 -4.10 6.25 -19.72 -0.12 -4.22 16 3 C 0.01 0.14 11.97 83.53 1.00 1.14 16 4 N -0.37 -4.09 6.83 -57.51 -0.39 -4.49 16 5 H 0.46 0.91 8.96 -219.99 -1.97 -1.06 16 6 N -0.26 -5.20 8.71 -48.17 -0.42 -5.62 16 7 C -0.03 -0.90 6.83 42.46 0.29 -0.61 16 8 C 0.57 19.10 7.36 86.75 0.64 19.74 16 9 O -0.53 -21.85 8.02 -3.95 -0.03 -21.88 16 10 N -0.59 -17.07 2.97 -798.54 -2.37 -19.44 16 11 C 0.08 1.74 6.11 86.36 0.53 2.26 16 12 C -0.13 -2.14 6.08 30.67 0.19 -1.95 16 13 C -0.11 -2.09 5.88 30.62 0.18 -1.91 16 14 C -0.13 -3.27 4.87 30.67 0.15 -3.12 16 15 C 0.17 5.21 2.57 44.97 0.12 5.32 16 16 H 0.07 2.24 7.88 -2.39 -0.02 2.22 16 17 C -0.07 -3.01 1.90 -9.40 -0.02 -3.03 16 18 H 0.08 3.96 5.97 -5.04 -0.03 3.93 16 19 C -0.12 -5.48 5.55 31.78 0.18 -5.30 16 20 C 0.20 11.52 5.37 86.73 0.47 11.98 16 21 N -0.63 -36.81 3.39 -691.98 -2.35 -39.16 16 22 C -0.24 -15.09 10.28 84.04 0.86 -14.23 16 23 H 0.08 4.87 7.83 -2.91 -0.02 4.85 16 24 C -0.07 -4.51 5.49 84.86 0.47 -4.04 16 25 N -0.95 -63.07 10.31 21.65 0.22 -62.85 16 26 Si 0.98 49.17 29.55 68.60 2.03 51.20 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 30 C 0.14 6.34 5.36 86.85 0.47 6.80 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.61 6.62 -2.38 -0.02 1.59 16 34 H 0.23 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.13 2.52 4.18 -25.40 -0.11 2.42 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 2.02 7.21 -2.39 -0.02 2.00 16 43 H 0.08 3.98 5.50 -8.72 -0.05 3.94 16 44 H 0.05 2.02 7.85 -2.39 -0.02 2.00 16 45 H 0.00 -0.23 7.51 -2.39 -0.02 -0.25 16 46 H 0.00 -0.04 7.38 -2.39 -0.02 -0.06 16 47 H 0.24 15.61 8.31 -92.71 -0.77 14.84 16 48 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 49 H 0.02 1.02 7.88 -2.39 -0.02 1.00 16 Total: -1.00 -84.91 367.36 1.63 -83.28 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -1.15 Total: 11.34 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.09 Total: 7.62 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -5.31 Total: -131.56 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.03 Total: -21.88 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.20 kcal Total: -84.91 1.63 -83.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.783 kcal (2) G-P(sol) polarization free energy of solvation -84.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds